Project measure / variable:   Kliethermes1   transitions_NP

ID, description, units MPD:59918   transitions_NP   number of transitions between novel and familiar compartments in novelty preference apparatus, 20 min test   [n]  
Data set, strains Kliethermes1   inbred   8 strains     sex: both     age: 8wks
Procedure two chamber assay
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  STRAIN COMPARISON PLOT
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Kliethermes1 - number of transitions between novel and familiar compartments in novelty preference apparatus, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means33.6   n 39.8   n
Median of the strain means29.3   n 40.0   n
SD of the strain means± 23.9 ± 22.7
Coefficient of variation (CV)0.710 0.571
Min–max range of strain means1.00   –   74.0   n 2.33   –   71.8   n
Mean sample size per strain5.8   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 557.9631 557.9631 1.8174 0.1817
strain 7 42927.3722 6132.4817 19.9752 < 0.0001
sex:strain 7 1763.023 251.8604 0.8204 0.5734
Residuals 75 23025.4 307.0053


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 17.5 25.8   6 10.5 1.47 -0.68
129S1/SvImJ m 38.7 20.3   6 8.31 0.526 21.0, 69.0 -0.05
A/J f 1.0 1.55   6 0.632 1.55 -1.37
A/J m 2.33 5.24   6 2.14 2.25 -1.65
BALB/cByJ f 19.4 19.1   5 8.53 0.983 -0.6
BALB/cByJ m 24.0 19.9   6 8.12 0.828 -0.7
BTBR T+ Itpr3tf/J f 74.0 23.0   6 9.37 0.31 49.0, 107.0 1.69
BTBR T+ Itpr3tf/J m 71.8 19.3   6 7.9 0.269 41.0, 91.0 1.41
C3H/HeJ f 25.8 15.2   6 6.22 0.59 11.0, 49.0 -0.33
C3H/HeJ m 24.3 10.2   6 4.15 0.418 12.0, 40.0 -0.68
C57BL/6J f 37.4 17.5   5 7.81 0.467 20.0, 62.0 0.16
C57BL/6J m 41.2 11.9   6 4.86 0.289 27.0, 59.0 0.06
DBA/2J f 32.8 9.75   6 3.98 0.297 22.0, 47.0 -0.04
DBA/2J m 55.0 6.08   3 3.51 0.111 48.0, 59.0 0.67
FVB/NJ f 61.2 30.8   6 12.6 0.504 32.0, 109.0 1.15
FVB/NJ m 61.3 11.4   6 4.64 0.185 45.0, 80.0 0.94


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 17.5 7.1532 31.7498 3.2502
129S1/SvImJ m 38.6667 7.1532 52.9165 24.4169
A/J f 1.0 7.1532 15.2498 -13.2498
A/J m 2.3333 7.1532 16.5831 -11.9165
BALB/cByJ f 19.4 7.8359 35.0099 3.7901
BALB/cByJ m 24.0 7.1532 38.2498 9.7502
BTBR T+ Itpr3tf/J f 74.0 7.1532 88.2498 59.7502
BTBR T+ Itpr3tf/J m 71.8333 7.1532 86.0831 57.5835
C3H/HeJ f 25.8333 7.1532 40.0831 11.5835
C3H/HeJ m 24.3333 7.1532 38.5831 10.0835
C57BL/6J f 37.4 7.8359 53.0099 21.7901
C57BL/6J m 41.1667 7.1532 55.4165 26.9169
DBA/2J f 32.8333 7.1532 47.0831 18.5835
DBA/2J m 55.0 10.1161 75.1523 34.8477
FVB/NJ f 61.1667 7.1532 75.4165 46.9169
FVB/NJ m 61.3333 7.1532 75.5831 47.0835


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 28.0833 5.058 38.1595 18.0072
A/J both 1.6667 5.058 11.7428 -8.4095
BALB/cByJ both 21.7 5.3049 32.2679 11.1321
BTBR T+ Itpr3tf/J both 72.9167 5.058 82.9928 62.8405
C3H/HeJ both 25.0833 5.058 35.1595 15.0072
C57BL/6J both 39.2833 5.3049 49.8513 28.7154
DBA/2J both 43.9167 6.1948 56.2574 31.576
FVB/NJ both 61.25 5.058 71.3261 51.1739




  GWAS USING LINEAR MIXED MODELS