Project measure / variable:   Kliethermes1   activity_fam_NP

ID, description, units MPD:59912   activity_fam_NP   activity (beam breaks) in familiar compartment of novelty preference apparatus, 20 min test   [n]  
Data set, strains Kliethermes1   inbred   14 strains     sex: both     age: 8wks
Procedure two chamber assay
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  STRAIN COMPARISON PLOT
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Kliethermes1 - activity (beam breaks) in familiar compartment of novelty preference apparatus, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means1971   n 1940   n
Median of the strain means1724   n 1656   n
SD of the strain means± 1003 ± 798
Coefficient of variation (CV)0.509 0.411
Min–max range of strain means591   –   3838   n 613   –   3373   n
Mean sample size per strain6.3   mice 6.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 28865.4192 28865.4192 0.0932 0.7606
strain 13 126617468.2326 9739805.2487 31.4396 < 0.0001
sex:strain 13 16151889.4444 1242453.0342 4.0106 < 0.0001
Residuals 157 48637628.7091 309793.8134


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 591.0 779.0   6 318.0 1.32 16.0, 2134.0 -1.38
129S1/SvImJ m 1512.0 412.0   6 168.0 0.272 776.0, 1830.0 -0.54
A/J f 834.0 412.0   6 168.0 0.494 246.0, 1432.0 -1.13
A/J m 1144.0 601.0   6 245.0 0.525 320.0, 2004.0 -1.0
AKR/J f 1418.0 505.0   6 206.0 0.356 848.0, 2206.0 -0.55
AKR/J m 1597.0 229.0   6 93.7 0.144 1328.0, 1880.0 -0.43
BALB/cByJ f 2337.0 993.0   5 444.0 0.425 1670.0, 4038.0 0.37
BALB/cByJ m 1586.0 792.0   6 323.0 0.499 560.0, 2690.0 -0.44
BTBR T+ Itpr3tf/J f 1993.0 231.0   6 94.2 0.116 1666.0, 2230.0 0.02
BTBR T+ Itpr3tf/J m 2416.0 643.0   6 262.0 0.266 1782.0, 3432.0 0.6
C3H/HeJ f 1405.0 155.0   6 63.3 0.11 1140.0, 1600.0 -0.56
C3H/HeJ m 1159.0 129.0   6 52.8 0.112 984.0, 1358.0 -0.98
C57BL/6J f 3137.0 578.0   11 174.0 0.184 1936.0, 3732.0 1.16
C57BL/6J m 2879.0 719.0   12 208.0 0.25 2002.0, 4400.0 1.18
C57L/J f 3555.0 1068.0   6 436.0 0.3 1824.0, 4580.0 1.58
C57L/J m 3373.0 750.0   6 306.0 0.222 2028.0, 4132.0 1.8
DBA/2J f 1234.0 544.0   12 157.0 0.441 690.0, 2170.0 -0.73
DBA/2J m 2167.0 616.0   9 205.0 0.284 1334.0, 3266.0 0.28
FVB/NJ f 2615.0 278.0   6 113.0 0.106 2270.0, 3082.0 0.64
FVB/NJ m 2729.0 370.0   6 151.0 0.136 2238.0, 3158.0 0.99
NOD/ShiLtJ f 3838.0 361.0   6 147.0 0.0941 3248.0, 4330.0 1.86
NOD/ShiLtJ m 2802.0 499.0   6 204.0 0.178 2086.0, 3500.0 1.08
NZB/BlNJ f 1183.0 360.0   6 147.0 0.304 938.0, 1908.0 -0.79
NZB/BlNJ m 1473.0 463.0   6 189.0 0.314 880.0, 2282.0 -0.59
PERA/EiJ f 1552.0 226.0   5 101.0 0.145 1336.0, 1806.0 -0.42
PERA/EiJ m 613.0 469.0   6 191.0 0.765 12.0, 1166.0 -1.66
PL/J f 1897.0 281.0   6 115.0 0.148 1582.0, 2330.0 -0.07
PL/J m 1715.0 428.0   5 191.0 0.25 1272.0, 2340.0 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 590.6667 227.2274 1039.4838 141.8495
129S1/SvImJ m 1512.3333 227.2274 1961.1505 1063.5162
A/J f 833.6667 227.2274 1282.4838 384.8495
A/J m 1144.0 227.2274 1592.8171 695.1829
AKR/J f 1418.0 227.2274 1866.8171 969.1829
AKR/J m 1597.0 227.2274 2045.8171 1148.1829
BALB/cByJ f 2336.8 248.9152 2828.4545 1845.1455
BALB/cByJ m 1585.6667 227.2274 2034.4838 1136.8495
BTBR T+ Itpr3tf/J f 1993.0 227.2274 2441.8171 1544.1829
BTBR T+ Itpr3tf/J m 2416.3333 227.2274 2865.1505 1967.5162
C3H/HeJ f 1405.0 227.2274 1853.8171 956.1829
C3H/HeJ m 1159.3333 227.2274 1608.1505 710.5162
C57BL/6J f 3137.0909 167.8186 3468.5643 2805.6175
C57BL/6J m 2879.0 160.6741 3196.3616 2561.6384
C57L/J f 3555.0 227.2274 4003.8171 3106.1829
C57L/J m 3373.3333 227.2274 3822.1505 2924.5162
DBA/2J f 1233.8333 160.6741 1551.195 916.4717
DBA/2J m 2166.6667 185.5304 2533.1243 1800.209
FVB/NJ f 2615.3333 227.2274 3064.1505 2166.5162
FVB/NJ m 2728.6667 227.2274 3177.4838 2279.8495
NOD/ShiLtJ f 3838.3333 227.2274 4287.1505 3389.5162
NOD/ShiLtJ m 2801.6667 227.2274 3250.4838 2352.8495
NZB/BlNJ f 1183.3333 227.2274 1632.1505 734.5162
NZB/BlNJ m 1472.6667 227.2274 1921.4838 1023.8495
PERA/EiJ f 1552.4 248.9152 2044.0545 1060.7455
PERA/EiJ m 613.0 227.2274 1061.8171 164.1829
PL/J f 1897.0 227.2274 2345.8171 1448.1829
PL/J m 1715.2 248.9152 2206.8545 1223.5455


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1051.5 160.6741 1368.8616 734.1384
A/J both 988.8333 160.6741 1306.195 671.4717
AKR/J both 1507.5 160.6741 1824.8616 1190.1384
BALB/cByJ both 1961.2333 168.5164 2294.085 1628.3816
BTBR T+ Itpr3tf/J both 2204.6667 160.6741 2522.0283 1887.305
C3H/HeJ both 1282.1667 160.6741 1599.5283 964.805
C57BL/6J both 3008.0455 116.1671 3237.4975 2778.5934
C57L/J both 3464.1667 160.6741 3781.5283 3146.805
DBA/2J both 1700.25 122.7168 1942.639 1457.861
FVB/NJ both 2672.0 160.6741 2989.3616 2354.6384
NOD/ShiLtJ both 3320.0 160.6741 3637.3616 3002.6384
NZB/BlNJ both 1328.0 160.6741 1645.3616 1010.6384
PERA/EiJ both 1082.7 168.5164 1415.5517 749.8483
PL/J both 1806.1 168.5164 2138.9517 1473.2483




  GWAS USING LINEAR MIXED MODELS