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Project measure / variable:   Palmer5   immobility

ID, description, units MPD:59741   immobility   duration of immobility   [s]  
Data set, strains Palmer5   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure forced swim test
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  STRAIN COMPARISON PLOT
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Palmer5 - duration of immobility



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means93.6   s 78.2   s
Median of the strain means94.4   s 72.7   s
SD of the strain means± 36.4 ± 30.4
Coefficient of variation (CV)0.389 0.389
Min–max range of strain means24.0   –   160   s 27.9   –   146   s
Mean sample size per strain5.0   mice 5.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14799.1555 14799.1555 13.5499 0.0003
strain 29 282713.7409 9748.7497 8.9258 < 0.0001
sex:strain 29 35645.7584 1229.1641 1.1254 0.3072
Residuals 245 267588.1018 1092.1963


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 131.0 26.7   6 10.9 0.205 98.2, 170.0 1.03
129SB6F1 m 143.0 45.7   5 20.4 0.319 86.3, 192.0 2.13
AB6F1 f 128.0 43.1   3 24.9 0.337 94.3, 176.0 0.95
AB6F1 m 76.6 28.0   4 14.0 0.365 53.6, 115.0 -0.05
AKB6F1 f 117.0 27.9   4 14.0 0.239 87.5, 152.0 0.64
AKB6F1 m 59.0 11.2   2   7.95 0.19 51.1, 67.0 -0.63
BKSB6F1 f 62.5 18.3   5 8.17 0.292 42.5, 90.7 -0.85
BKSB6F1 m 74.0 39.4   6 16.1 0.532 21.8, 118.0 -0.14
BTBRB6F1 f 106.0 25.4   4 12.7 0.238 72.1, 133.0 0.34
BTBRB6F1 m 111.0 10.7   4 5.36 0.0964 95.4, 119.0 1.08
BUB6F1 f 85.8 20.5   7 7.73 0.238 61.0, 114.0 -0.21
BUB6F1 m 82.5 20.0   5 8.96 0.243 53.6, 110.0 0.14
C3B6F1 f 58.6 24.4   4 12.2 0.416 34.7, 87.3 -0.96
C3B6F1 m 57.0 10.5   4 5.23 0.183 41.4, 63.1 -0.7
C57BL/6J f 122.0 30.1   8 10.6 0.247 72.3, 160.0 0.78
C57BL/6J m 104.0 34.1   9 11.4 0.329 46.3, 154.0 0.85
C57LB6F1 f 115.0 57.8   7 21.8 0.504 45.0, 197.0 0.59
C57LB6F1 m 97.6 34.8   5 15.6 0.356 67.8, 152.0 0.64
C58B6F1 f 67.3 40.2   6 16.4 0.598 7.6, 114.0 -0.72
C58B6F1 m 35.5 22.6   4 11.3 0.637 14.2, 57.3 -1.41
CBAB6F1 f 67.1 38.0   5 17.0 0.567 25.5, 122.0 -0.73
CBAB6F1 m 53.6 28.9   3 16.7 0.54 28.5, 85.2 -0.81
CByB6F1 f 94.1 35.3   4 17.7 0.375 46.1, 124.0 0.01
CByB6F1 m 84.0 34.8   5 15.6 0.414 38.6, 128.0 0.19
D2B6F1 f 135.0 40.6   5 18.1 0.301 75.9, 175.0 1.14
D2B6F1 m 96.5 25.4   5 11.3 0.263 71.3, 130.0 0.6
DDYB6F1 f 160.0 48.8   4 24.4 0.306 94.6, 202.0 1.82
DDYB6F1 m 146.0 18.0   5 8.04 0.123 126.0, 171.0 2.23
FVBB6F1 f 68.1 48.9   5 21.9 0.718 27.7, 148.0 -0.7
FVBB6F1 m 71.0 31.2   7 11.8 0.439 28.2, 109.0 -0.24
IB6F1 f 139.0 57.2   6 23.4 0.411 34.8, 183.0 1.25
IB6F1 m 75.5 27.8   6 11.3 0.367 24.0, 102.0 -0.09
KKB6F1 f 146.0 40.0   4 20.0 0.275 86.6, 176.0 1.44
KKB6F1 m 110.0 20.0   5 8.96 0.182 80.9, 136.0 1.04
LPB6F1 f 140.0 18.7   3 10.8 0.133 119.0, 155.0 1.27
LPB6F1 m 135.0 32.8   6 13.4 0.243 93.3, 168.0 1.87
MAB6F1 f 99.8 56.1   6 22.9 0.562 25.4, 164.0 0.17
MAB6F1 m 68.2 28.4   5 12.7 0.416 42.6, 115.0 -0.33
MRLB6F1 f 115.0 35.9   7 13.6 0.313 67.4, 167.0 0.59
MRLB6F1 m 70.9 11.6   5 5.19 0.164 50.2, 77.0 -0.24
NODB6F1 f 77.9 31.7   5 14.2 0.407 43.5, 111.0 -0.43
NODB6F1 m 84.6 38.9   6 15.9 0.459 24.9, 138.0 0.21
NONB6F1 f 94.8 33.2   4 16.6 0.351 67.9, 141.0 0.03
NONB6F1 m 69.1 12.2   3 7.07 0.177 60.9, 83.2 -0.3
NZBB6F1 f 55.2 33.1   4 16.5 0.598 18.7, 88.6 -1.05
NZBB6F1 m 71.3 49.9   4 25.0 0.7 9.5, 128.0 -0.23
NZWB6F1 f 122.0 17.3   4 8.63 0.142 100.0, 142.0 0.78
NZWB6F1 m 98.2 36.2   6 14.8 0.368 51.9, 146.0 0.66
PLB6F1 f 64.3 10.9   5 4.86 0.169 45.6, 71.4 -0.8
PLB6F1 m 34.4 17.4   6 7.11 0.506 20.7, 66.3 -1.44
RIIIB6F1 f 29.3 22.6   5 10.1 0.77 3.4, 62.8 -1.76
RIIIB6F1 m 44.6 20.1   8 7.1 0.45 14.8, 68.5 -1.11
SEAB6F1 f 75.2 37.2   8 13.1 0.494 44.3, 147.0 -0.5
SEAB6F1 m 63.7 29.5   6 12.0 0.463 25.9, 95.1 -0.48
SJLB6F1 f 61.3 40.4   6 16.5 0.66 8.6, 121.0 -0.89
SJLB6F1 m 50.2 14.3   4 7.15 0.285 35.8, 68.8 -0.92
SMB6F1 f 45.5 39.7   4 19.8 0.872 6.7, 88.1 -1.32
SMB6F1 m 27.9 11.2   6 4.57 0.401 14.2, 41.5 -1.66
SWRB6F1 f 24.0 14.1   4 7.05 0.586 5.7, 39.1 -1.91
SWRB6F1 m 52.6 22.0   4 11.0 0.418 38.3, 85.3 -0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 130.5333 13.492 157.1083 103.9583
129SB6F1 m 143.26 14.7797 172.3715 114.1485
AB6F1 f 127.8667 19.0805 165.4494 90.2839
AB6F1 m 76.625 16.5242 109.1726 44.0774
AKB6F1 f 116.675 16.5242 149.2226 84.1274
AKB6F1 m 59.05 23.3687 105.0793 13.0207
BKSB6F1 f 62.5 14.7797 91.6115 33.3885
BKSB6F1 m 73.9667 13.492 100.5417 47.3917
BTBRB6F1 f 106.425 16.5242 138.9726 73.8774
BTBRB6F1 m 111.25 16.5242 143.7976 78.7024
BUB6F1 f 85.8429 12.4911 110.4465 61.2392
BUB6F1 m 82.5 14.7797 111.6115 53.3885
C3B6F1 f 58.625 16.5242 91.1726 26.0774
C3B6F1 m 57.025 16.5242 89.5726 24.4774
C57BL/6J f 121.975 11.6844 144.9896 98.9604
C57BL/6J m 103.6333 11.0161 125.3317 81.9349
C57LB6F1 f 114.5714 12.4911 139.1751 89.9677
C57LB6F1 m 97.62 14.7797 126.7315 68.5085
C58B6F1 f 67.2833 13.492 93.8583 40.7083
C58B6F1 m 35.55 16.5242 68.0976 3.0024
CBAB6F1 f 67.1 14.7797 96.2115 37.9885
CBAB6F1 m 53.5667 19.0805 91.1494 15.9839
CByB6F1 f 94.075 16.5242 126.6226 61.5274
CByB6F1 m 84.04 14.7797 113.1515 54.9285
D2B6F1 f 134.78 14.7797 163.8915 105.6685
D2B6F1 m 96.54 14.7797 125.6515 67.4285
DDYB6F1 f 159.575 16.5242 192.1226 127.0274
DDYB6F1 m 146.5 14.7797 175.6115 117.3885
FVBB6F1 f 68.1 14.7797 97.2115 38.9885
FVBB6F1 m 71.0143 12.4911 95.618 46.4106
IB6F1 f 139.3 13.492 165.875 112.725
IB6F1 m 75.5333 13.492 102.1083 48.9583
KKB6F1 f 145.55 16.5242 178.0976 113.0024
KKB6F1 m 110.06 14.7797 139.1715 80.9485
LPB6F1 f 140.2 19.0805 177.7827 102.6173
LPB6F1 m 134.8833 13.492 161.4583 108.3083
MAB6F1 f 99.8167 13.492 126.3917 73.2417
MAB6F1 m 68.16 14.7797 97.2715 39.0485
MRLB6F1 f 114.7286 12.4911 139.3323 90.1249
MRLB6F1 m 70.92 14.7797 100.0315 41.8085
NODB6F1 f 77.92 14.7797 107.0315 48.8085
NODB6F1 m 84.6333 13.492 111.2083 58.0583
NONB6F1 f 94.8 16.5242 127.3476 62.2524
NONB6F1 m 69.1333 19.0805 106.7161 31.5506
NZBB6F1 f 55.225 16.5242 87.7726 22.6774
NZBB6F1 m 71.275 16.5242 103.8226 38.7274
NZWB6F1 f 121.85 16.5242 154.3976 89.3024
NZWB6F1 m 98.2333 13.492 124.8083 71.6583
PLB6F1 f 64.32 14.7797 93.4315 35.2085
PLB6F1 m 34.4333 13.492 61.0083 7.8583
RIIIB6F1 f 29.3 14.7797 58.4115 0.1885
RIIIB6F1 m 44.6375 11.6844 67.6521 21.6229
SEAB6F1 f 75.2125 11.6844 98.2271 52.1979
SEAB6F1 m 63.6667 13.492 90.2417 37.0917
SJLB6F1 f 61.3167 13.492 87.8917 34.7417
SJLB6F1 m 50.2 16.5242 82.7476 17.6524
SMB6F1 f 45.525 16.5242 78.0726 12.9774
SMB6F1 m 27.8833 13.492 54.4583 1.3083
SWRB6F1 f 24.05 16.5242 56.5976 0.0
SWRB6F1 m 52.6 16.5242 85.1476 20.0524


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 136.8967 10.0059 156.6052 117.1881
AB6F1 both 102.2458 12.6206 127.1045 77.3872
AKB6F1 both 87.8625 14.3104 116.0496 59.6754
BKSB6F1 both 68.2333 10.0059 87.9419 48.5248
BTBRB6F1 both 108.8375 11.6844 131.8521 85.8229
BUB6F1 both 84.1714 9.6756 103.2294 65.1135
C3B6F1 both 57.825 11.6844 80.8396 34.8104
C57BL/6J both 112.8042 8.0293 128.6195 96.9889
C57LB6F1 both 106.0957 9.6756 125.1536 87.0378
C58B6F1 both 51.4167 10.6663 72.4261 30.4073
CBAB6F1 both 60.3333 12.0676 84.1027 36.5639
CByB6F1 both 89.0575 11.0848 110.8911 67.2239
D2B6F1 both 115.66 10.4508 136.2449 95.0751
DDYB6F1 both 153.0375 11.0848 174.8711 131.2039
FVBB6F1 both 69.5571 9.6756 88.6151 50.4992
IB6F1 both 107.4167 9.5402 126.208 88.6253
KKB6F1 both 127.805 11.0848 149.6386 105.9714
LPB6F1 both 137.5417 11.6844 160.5563 114.527
MAB6F1 both 83.9883 10.0059 103.6969 64.2798
MRLB6F1 both 92.8243 9.6756 111.8822 73.7664
NODB6F1 both 81.2767 10.0059 100.9852 61.5681
NONB6F1 both 81.9667 12.6206 106.8253 57.108
NZBB6F1 both 63.25 11.6844 86.2646 40.2354
NZWB6F1 both 110.0417 10.6663 131.0511 89.0323
PLB6F1 both 49.3767 10.0059 69.0852 29.6681
RIIIB6F1 both 36.9688 9.4202 55.5237 18.4138
SEAB6F1 both 69.4396 8.9241 87.0173 51.8619
SJLB6F1 both 55.7583 10.6663 76.7677 34.7489
SMB6F1 both 36.7042 10.6663 57.7136 15.6948
SWRB6F1 both 38.325 11.6844 61.3396 15.3104




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA