Project measure / variable:   GMC21   liver_wt

ID, description, units MPD:57004   liver_wt   liver weight   [g]  
Data set, strains GMC21   inbred w/CC8   8 strains     sex: both     age: 21wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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GMC21 - liver weight



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means1.1199   g 1.4284   g
Median of the strain means1.042   g 1.2855   g
SD of the strain means± 0.55318 ± 0.73364
Coefficient of variation (CV)0.494 0.5136
Min–max range of strain means0.54792   –   2.3522   g 0.71817   –   3.054   g
Mean sample size per strain10.4   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.5752 4.5752 128.906 < 0.0001
strain 7 65.912 9.416 265.2968 < 0.0001
sex:strain 7 1.3823 0.1975 5.564 < 0.0001
Residuals 163 5.7852 0.0355


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.9775 0.10286   10 0.03253 0.1052 0.802, 1.129 -0.26
129S1/SvImJ m 1.2082 0.13372   12 0.0386 0.1107 0.98, 1.393 -0.3
A/J f 1.0093 0.11863   10 0.03751 0.1175 0.82, 1.208 -0.2
A/J m 1.2023 0.11505   12 0.03321 0.0957 1.066, 1.384 -0.31
C57BL/6J f 1.0747 0.08417   10 0.02662 0.0783 0.978, 1.244 -0.08
C57BL/6J m 1.4706 0.18611   12 0.05373 0.1266 1.194, 1.674 0.06
CAST/EiJ f 0.54792 0.06838   12 0.01974 0.1248 0.491, 0.716 -1.03
CAST/EiJ m 0.74983 0.09341   12 0.02696 0.1246 0.649, 1.0 -0.93
NOD/ShiLtJ f 1.2633 0.32295   11 0.09737 0.2556 0.678, 1.805 0.26
NOD/ShiLtJ m 1.6617 0.18456   12 0.05328 0.1111 1.449, 2.082 0.32
NZO/HlLtJ f 2.3522 0.20707   10 0.06548 0.088 2.019, 2.61 2.23
NZO/HlLtJ m 3.054 0.39488   12 0.11399 0.1293 2.245, 3.565 2.22
PWK/PhJ f 1.1053 0.19351   10 0.06119 0.1751 0.777, 1.334 -0.03
PWK/PhJ m 1.3628 0.1821   12 0.05257 0.1336 1.069, 1.724 -0.09
WSB/EiJ f 0.629 0.1854   10 0.05863 0.2947 0.438, 0.955 -0.89
WSB/EiJ m 0.71817 0.09486   12 0.02738 0.1321 0.56, 0.904 -0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.9775 0.0596 1.0951 0.8599
129S1/SvImJ m 1.2082 0.0544 1.3156 1.1008
A/J f 1.0093 0.0596 1.1269 0.8917
A/J m 1.2023 0.0544 1.3096 1.0949
C57BL/6J f 1.0747 0.0596 1.1923 0.9571
C57BL/6J m 1.4706 0.0544 1.578 1.3632
CAST/EiJ f 0.5479 0.0544 0.6553 0.4405
CAST/EiJ m 0.7498 0.0544 0.8572 0.6424
NOD/ShiLtJ f 1.2633 0.0568 1.3754 1.1511
NOD/ShiLtJ m 1.6617 0.0544 1.7691 1.5543
NZO/HlLtJ f 2.3522 0.0596 2.4698 2.2346
NZO/HlLtJ m 3.054 0.0544 3.1614 2.9466
PWK/PhJ f 1.1053 0.0596 1.2229 0.9877
PWK/PhJ m 1.3628 0.0544 1.4702 1.2554
WSB/EiJ f 0.629 0.0596 0.7466 0.5114
WSB/EiJ m 0.7182 0.0544 0.8256 0.6108


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.0928 0.0403 1.1725 1.0132
A/J both 1.1058 0.0403 1.1854 1.0261
C57BL/6J both 1.2726 0.0403 1.3523 1.193
CAST/EiJ both 0.6489 0.0385 0.7248 0.5729
NOD/ShiLtJ both 1.4625 0.0393 1.5401 1.3848
NZO/HlLtJ both 2.7031 0.0403 2.7827 2.6235
PWK/PhJ both 1.2341 0.0403 1.3137 1.1544
WSB/EiJ both 0.6736 0.0403 0.7532 0.5939




  GWAS USING LINEAR MIXED MODELS