Project measure / variable:   GMC09   bw_after

ID, description, units MPD:55802   bw_after   body weight after testing   [g]  
Data set, strains GMC09   inbred w/CC8   8 strains     sex: both     age: 12-13wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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GMC09 - body weight after testing



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means20.6   g 25.0   g
Median of the strain means18.8   g 22.6   g
SD of the strain means± 9.97 ± 11.4
Coefficient of variation (CV)0.485 0.455
Min–max range of strain means12.8   –   43.3   g 15.1   –   50.0   g
Mean sample size per strain17.5   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1570.5699 1570.5699 394.2022 < 0.0001
strain 7 27138.7617 3876.966 973.0917 < 0.0001
sex:strain 7 209.553 29.9361 7.5138 < 0.0001
Residuals 255 1015.9642 3.9842


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 19.2 1.52   16 0.379 0.079 16.6, 21.8 -0.14
129S1/SvImJ m 23.5 2.59   16 0.648 0.11 20.5, 28.3 -0.13
A/J f 18.3 1.5   16 0.375 0.0822 14.9, 21.8 -0.23
A/J m 21.8 1.12   16 0.281 0.0516 19.9, 24.0 -0.28
C57BL/6J f 20.6 1.21   16 0.303 0.0589 18.9, 22.7 0.01
C57BL/6J m 28.2 1.91   16 0.477 0.0678 25.0, 31.6 0.28
CAST/EiJ f 12.8 0.881   19 0.202 0.0688 11.1, 14.2 -0.78
CAST/EiJ m 15.8 1.37   14 0.366 0.0868 13.5, 18.0 -0.81
NOD/ShiLtJ f 23.4 1.67   18 0.394 0.0713 20.7, 26.8 0.29
NOD/ShiLtJ m 28.7 2.99   16 0.747 0.104 21.5, 33.2 0.32
NZO/HlLtJ f 43.3 3.51   17 0.852 0.081 36.8, 49.1 2.28
NZO/HlLtJ m 50.0 3.43   17 0.832 0.0686 42.2, 54.1 2.19
PWK/PhJ f 13.9 1.16   20 0.26 0.0832 11.7, 15.6 -0.67
PWK/PhJ m 17.1 1.55   20 0.346 0.0904 13.9, 19.6 -0.7
WSB/EiJ f 12.9 1.95   18 0.461 0.152 9.2, 16.8 -0.77
WSB/EiJ m 15.1 0.815   16 0.204 0.054 13.4, 16.5 -0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 19.175 0.499 20.1577 18.1923
129S1/SvImJ m 23.55 0.499 24.5327 22.5673
A/J f 18.2625 0.499 19.2452 17.2798
A/J m 21.7625 0.499 22.7452 20.7798
C57BL/6J f 20.6062 0.499 21.589 19.6235
C57BL/6J m 28.1687 0.499 29.1515 27.186
CAST/EiJ f 12.8158 0.4579 13.7176 11.914
CAST/EiJ m 15.7857 0.5335 16.8363 14.7352
NOD/ShiLtJ f 23.4333 0.4705 24.3598 22.5068
NOD/ShiLtJ m 28.7062 0.499 29.689 27.7235
NZO/HlLtJ f 43.3294 0.4841 44.2828 42.376
NZO/HlLtJ m 50.0059 0.4841 50.9592 49.0525
PWK/PhJ f 13.95 0.4463 14.829 13.071
PWK/PhJ m 17.13 0.4463 18.009 16.251
WSB/EiJ f 12.8944 0.4705 13.8209 11.9679
WSB/EiJ m 15.0875 0.499 16.0702 14.1048


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 21.3625 0.3529 22.0574 20.6676
A/J both 20.0125 0.3529 20.7074 19.3176
C57BL/6J both 24.3875 0.3529 25.0824 23.6926
CAST/EiJ both 14.3008 0.3515 14.993 13.6085
NOD/ShiLtJ both 26.0698 0.3429 26.7451 25.3945
NZO/HlLtJ both 46.6676 0.3423 47.3418 45.9935
PWK/PhJ both 15.54 0.3156 16.1615 14.9185
WSB/EiJ both 13.991 0.3429 14.6663 13.3157




  GWAS USING LINEAR MIXED MODELS