Project measure / variable:   Shimomura2   phase_angle

ID, description, units MPD:52721   phase_angle   phase angle of entrainment   [h]  
Data set, strains Shimomura2   inbred w/CC7   38 strains     sex: both     age: 10wks
Procedure monitoring system
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Shimomura2 - phase angle of entrainment



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested37 strains38 strains
Mean of the strain means1.28   h 1.39   h
Median of the strain means1.19   h 1.25   h
SD of the strain means± 0.850 ± 0.904
Coefficient of variation (CV)0.664 0.650
Min–max range of strain means0.143   –   3.29   h 0.0800   –   3.75   h
Mean sample size per strain9.2   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.4146 7.4146 6.3141 0.0123
strain 35 362.0801 10.3451 8.8097 < 0.0001
sex:strain 35 39.8209 1.1377 0.9689 0.5219
Residuals 554 650.5566 1.1743


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.51 1.27   16 0.318 0.845 0.04, 3.55 0.27
129S1/SvImJ m 1.58 1.43   12 0.414 0.91 0.21
A/J f 1.27 0.988   14 0.264 0.78 -0.01
A/J m 1.32 0.897   12 0.259 0.677 0.09, 2.79 -0.08
AKR/J f 0.577 0.586   11 0.177 1.01 0.1, 1.85 -0.83
AKR/J m 0.659 0.497   7 0.188 0.755 -0.81
BALB/cByJ f 1.62 1.35   11 0.407 0.83 0.14, 4.64 0.4
BALB/cByJ m 1.84 1.29   10 0.406 0.698 0.44, 4.64 0.5
BTBR T+ Itpr3tf/J f 0.335 0.229   14 0.0613 0.684 0.02, 0.86 -1.11
BTBR T+ Itpr3tf/J m 0.301 0.213   10 0.0673 0.707 0.08, 0.66 -1.2
BUB/BnJ f 0.948 0.332   6 0.135 0.35 0.64, 1.53 -0.39
BUB/BnJ m 1.3 1.04   2   0.735 0.797 0.57, 2.04 -0.1
C3H/HeJ f 0.828 0.917   13 0.254 1.11 -0.53
C3H/HeJ m 0.889 0.75   11 0.226 0.843 -0.55
C57BL/10J f 0.38 0.441   8 0.156 1.16 0.02, 1.42 -1.06
C57BL/10J m 0.87 0.316   7 0.119 0.363 0.53, 1.46 -0.58
C57BL/6J f 0.229 0.266   15 0.0686 1.16 -1.24
C57BL/6J m 0.327 0.334   11 0.101 1.02 -1.18
C57BLKS/J f 1.95 1.33   7 0.503 0.683 0.07, 4.11 0.79
C57BLKS/J m 1.62 1.64   4 0.818 1.01 0.6, 4.04 0.25
C57BR/cdJ f 0.97 1.21   12 0.349 1.24 0.03, 3.39 -0.36
C57BR/cdJ m 0.408 0.345   12 0.0996 0.847 0.03, 1.04 -1.09
C57L/J f 0.578 0.406   4 0.203 0.703 0.13, 1.0 -0.83
C57L/J m 0.846 1.29   16 0.322 1.52 0.01, 3.95 -0.6
C58/J f 2.05 1.18   10 0.373 0.575 0.47, 4.14 0.91
C58/J m 2.12 1.05   13 0.291 0.494 0.16, 3.25 0.81
CAST/EiJ f 3.19 1.59   14 0.425 0.499 0.23, 5.65 2.25
CAST/EiJ m 2.55 1.2   7 0.452 0.47 1.31, 4.94 1.28
CBA/J f 0.909 0.968   8 0.342 1.07 0.1, 2.7 -0.44
CBA/J m 1.08 0.946   8 0.335 0.875 0.09, 2.66 -0.34
CZECHII/EiJ f 1.72 1.65   10 0.52 0.959 0.26, 4.93 0.52
CZECHII/EiJ m 2.58 0.913   4 0.456 0.353 1.59, 3.36 1.32
DBA/1J f 0.239 0.138   12 0.0399 0.578 0.03, 0.53 -1.22
DBA/1J m 1.48 1.39   9 0.463 0.935 0.02, 3.38 0.1
DBA/2J f 0.722 0.676   16 0.169 0.936 -0.66
DBA/2J m 1.3 1.22   14 0.326 0.941 0.08, 4.21 -0.1
FVB/NJ f 1.9 1.11   13 0.307 0.584 0.14, 3.69 0.73
FVB/NJ m 2.25 1.27   20 0.284 0.565 0.26, 4.59 0.95
I/LnJ f 1.53 1.29   7 0.486 0.842 0.02, 3.62 0.3
I/LnJ m 0.828 0.846   5 0.378 1.02 0.05, 1.81 -0.62
JF1/MsJ f 0.691 0.53   7 0.2 0.766 -0.69
JF1/MsJ m 0.98 0.339   2   0.24 0.346 0.74, 1.22 -0.45
LP/J f 1.7 1.55   11 0.468 0.911 0.1, 5.5 0.5
LP/J m 3.06 1.61   10 0.508 0.525 0.85, 5.97 1.85
MA/MyJ f 0.899 0.495   8 0.175 0.55 0.26, 1.58 -0.45
MA/MyJ m 0.95 0.58   2   0.41 0.61 0.54, 1.36 -0.49
MOLF/EiJ f 0.143 0.0404   3 0.0233 0.282 0.12, 0.19 -1.34
MOLF/EiJ m 0.08 0.0566   2   0.04 0.707 0.04, 0.12 -1.45
MSM/MsJ f 0.497 0.259   3 0.149 0.521 0.3, 0.79 -0.92
MSM/MsJ m 0.57 0.0   1   0.0 0.0 0.57, 0.57 -0.91
NOD/ShiLtJ f 1.3 0.88   3 0.508 0.676 0.79, 2.32 0.02
NOD/ShiLtJ m 1.2 0.255   3 0.147 0.213 0.94, 1.45 -0.21
NZB/BlNJ f 1.73 1.17   6 0.479 0.679 0.04, 3.11 0.53
NZB/BlNJ m 1.45 1.59   5 0.713 1.1 0.09, 4.04 0.07
NZW/LacJ f 3.29 0.317   4 0.159 0.0965 2.88, 3.65 2.37
NZW/LacJ m 3.75 1.29   4 0.643 0.343 2.65, 5.58 2.61
PERA/EiJ f 0.837 0.607   12 0.175 0.726 -0.52
PERA/EiJ m 0.717 0.55   11 0.166 0.766 0.01, 1.71 -0.74
PL/J f 2.38 3.59   3 2.07 1.51 0.02, 6.51 1.3
PL/J m 1.04 0.629   2   0.445 0.602 0.6, 1.49 -0.39
PWK/PhJ f 2.88 2.34   3 1.35 0.813 1.4, 5.58 1.88
PWK/PhJ m 3.59 2.25   3 1.3 0.626 1.15, 5.58 2.43
RIIIS/J f 2.65 0.928   4 0.464 0.351 1.67, 3.66 1.61
RIIIS/J m 2.14 1.08   12 0.312 0.506 0.94, 3.79 0.83
SEA/GnJ f 1.37 1.47   12 0.425 1.07 0.11
SEA/GnJ m 1.6 2.02   13 0.56 1.27 0.05, 6.73 0.23
SJL/J f 1.69 1.14   10 0.361 0.675 0.16, 3.31 0.48
SJL/J m 0.627 0.517   7 0.195 0.824 0.07, 1.3 -0.84
SM/J f 1.19 0.926   2   0.655 0.782 0.53, 1.84 -0.1
SM/J m 2.3 1.1   6 0.449 0.478 1.27, 4.04 1.01
SPRET/EiJ f 0.437 0.864   19 0.198 1.98 -0.99
SPRET/EiJ m 0.42 0.336   5 0.15 0.801 0.06, 0.81 -1.07
SWR/J m 1.85 0.778   2   0.55 0.42 1.3, 2.4 0.51
WSB/EiJ f 0.188 0.221   11 0.0667 1.18 -1.28
WSB/EiJ m 0.34 0.503   6 0.205 1.48 -1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.5056 0.2709 2.0378 0.9735
129S1/SvImJ m 1.5767 0.3128 2.1911 0.9622
A/J f 1.2664 0.2896 1.8353 0.6975
A/J m 1.325 0.3128 1.9395 0.7105
AKR/J f 0.5773 0.3267 1.2191 0.0
AKR/J m 0.6586 0.4096 1.4631 0.0
BALB/cByJ f 1.6245 0.3267 2.2663 0.9828
BALB/cByJ m 1.841 0.3427 2.5141 1.1679
BTBR T+ Itpr3tf/J f 0.335 0.2896 0.9039 0.0
BTBR T+ Itpr3tf/J m 0.301 0.3427 0.9741 0.0
BUB/BnJ f 0.9483 0.4424 1.8173 0.0794
BUB/BnJ m 1.305 0.7663 2.8101 0.0
C3H/HeJ f 0.8285 0.3005 1.4188 0.2381
C3H/HeJ m 0.8891 0.3267 1.5309 0.2473
C57BL/10J f 0.38 0.3831 1.1326 0.0
C57BL/10J m 0.87 0.4096 1.6745 0.0655
C57BL/6J f 0.2287 0.2798 0.7783 0.0
C57BL/6J m 0.3273 0.3267 0.9691 0.0
C57BLKS/J f 1.9457 0.4096 2.7502 1.1412
C57BLKS/J m 1.62 0.5418 2.6843 0.5557
C57BR/cdJ f 0.97 0.3128 1.5845 0.3555
C57BR/cdJ m 0.4075 0.3128 1.022 0.0
C57L/J f 0.5775 0.5418 1.6418 0.0
C57L/J m 0.8463 0.2709 1.3784 0.3141
C58/J f 2.049 0.3427 2.7221 1.3759
C58/J m 2.1208 0.3005 2.7111 1.5304
CAST/EiJ f 3.1879 0.2896 3.7567 2.619
CAST/EiJ m 2.5471 0.4096 3.3517 1.7426
CBA/J f 0.9088 0.3831 1.6613 0.1562
CBA/J m 1.0813 0.3831 1.8338 0.3287
CZECHII/EiJ f 1.716 0.3427 2.3891 1.0429
CZECHII/EiJ m 2.585 0.5418 3.6493 1.5207
DBA/1J f 0.2392 0.3128 0.8536 0.0
DBA/1J m 1.4844 0.3612 2.194 0.7749
DBA/2J f 0.7219 0.2709 1.254 0.1897
DBA/2J m 1.2971 0.2896 1.866 0.7283
FVB/NJ f 1.8977 0.3005 2.488 1.3073
FVB/NJ m 2.246 0.2423 2.722 1.77
I/LnJ f 1.5271 0.4096 2.3317 0.7226
I/LnJ m 0.828 0.4846 1.7799 0.0
JF1/MsJ f 0.6914 0.4096 1.4959 0.0
JF1/MsJ m 0.98 0.7663 2.4851 0.0
LP/J f 1.7027 0.3267 2.3445 1.0609
LP/J m 3.061 0.3427 3.7341 2.3879
MA/MyJ f 0.8987 0.3831 1.6513 0.1462
MA/MyJ m 0.95 0.7663 2.4551 0.0
MOLF/EiJ f 0.1433 0.6256 1.3723 0.0
MOLF/EiJ m 0.08 0.7663 1.5851 0.0
NOD/ShiLtJ f 1.3033 0.6256 2.5323 0.0744
NOD/ShiLtJ m 1.2 0.6256 2.4289 0.0
NZB/BlNJ f 1.7267 0.4424 2.5956 0.8577
NZB/BlNJ m 1.448 0.4846 2.3999 0.4961
NZW/LacJ f 3.2875 0.5418 4.3518 2.2232
NZW/LacJ m 3.75 0.5418 4.8143 2.6857
PERA/EiJ f 0.8367 0.3128 1.4511 0.2222
PERA/EiJ m 0.7173 0.3267 1.3591 0.0755
PL/J f 2.3767 0.6256 3.6056 1.1477
PL/J m 1.045 0.7663 2.5501 0.0
PWK/PhJ f 2.88 0.6256 4.1089 1.6511
PWK/PhJ m 3.5933 0.6256 4.8223 2.3644
RIIIS/J f 2.6475 0.5418 3.7118 1.5832
RIIIS/J m 2.1375 0.3128 2.752 1.523
SEA/GnJ f 1.3717 0.3128 1.9861 0.7572
SEA/GnJ m 1.5954 0.3005 2.1857 1.005
SJL/J f 1.691 0.3427 2.3641 1.0179
SJL/J m 0.6271 0.4096 1.4317 0.0
SM/J f 1.185 0.7663 2.6901 0.0
SM/J m 2.3 0.4424 3.169 1.431
SPRET/EiJ f 0.4374 0.2486 0.9257 0.0
SPRET/EiJ m 0.42 0.4846 1.3719 0.0
WSB/EiJ f 0.1882 0.3267 0.83 0.0
WSB/EiJ m 0.34 0.4424 1.209 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.5411 0.2069 1.9476 1.1347
A/J both 1.2957 0.2132 1.7144 0.877
AKR/J both 0.6179 0.262 1.1325 0.1033
BALB/cByJ both 1.7328 0.2367 2.1978 1.2678
BTBR T+ Itpr3tf/J both 0.318 0.2243 0.7587 0.0
BUB/BnJ both 1.1267 0.4424 1.9956 0.2577
C3H/HeJ both 0.8588 0.222 1.2948 0.4228
C57BL/10J both 0.625 0.2804 1.1758 0.0742
C57BL/6J both 0.278 0.2151 0.7004 0.0
C57BLKS/J both 1.7829 0.3396 2.4499 1.1158
C57BR/cdJ both 0.6887 0.2212 1.1232 0.2543
C57L/J both 0.7119 0.3029 1.3068 0.1169
C58/J both 2.0849 0.2279 2.5325 1.6372
CAST/EiJ both 2.8675 0.2508 3.3602 2.3748
CBA/J both 0.995 0.2709 1.5271 0.4629
CZECHII/EiJ both 2.1505 0.3205 2.7801 1.5209
DBA/1J both 0.8618 0.2389 1.3311 0.3925
DBA/2J both 1.0095 0.1983 1.399 0.62
FVB/NJ both 2.0718 0.193 2.451 1.6927
I/LnJ both 1.1776 0.3173 1.8007 0.5544
JF1/MsJ both 0.8357 0.4344 1.689 0.0
LP/J both 2.3819 0.2367 2.8469 1.9168
MA/MyJ both 0.9244 0.4283 1.7658 0.083
MOLF/EiJ both 0.1117 0.4946 1.0832 0.0
NOD/ShiLtJ both 1.2517 0.4424 2.1206 0.3827
NZB/BlNJ both 1.5873 0.3281 2.2318 0.9429
NZW/LacJ both 3.5188 0.3831 4.2713 2.7662
PERA/EiJ both 0.777 0.2262 1.2212 0.3327
PL/J both 1.7108 0.4946 2.6824 0.7393
PWK/PhJ both 3.2367 0.4424 4.1056 2.3677
RIIIS/J both 2.3925 0.3128 3.007 1.778
SEA/GnJ both 1.4835 0.2169 1.9096 1.0575
SJL/J both 1.1591 0.267 1.6836 0.6346
SM/J both 1.7425 0.4424 2.6115 0.8735
SPRET/EiJ both 0.4287 0.2723 0.9636 0.0
WSB/EiJ both 0.2641 0.275 0.8042 0.0




  GWAS USING LINEAR MIXED MODELS