Project measure / variable:   Shimomura2   LD_light_activity

ID, description, units MPD:52711   LD_light_activity   percent activity in daytime under light-dark cycle   [%]  
Data set, strains Shimomura2   inbred w/CC7   38 strains     sex: both     age: 10wks
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  STRAIN COMPARISON PLOT
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Shimomura2 - percent activity in daytime under light-dark cycle



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains38 strains
Mean of the strain means10.1   % 13.7   %
Median of the strain means7.37   % 12.4   %
SD of the strain means± 8.51 ± 9.53
Coefficient of variation (CV)0.846 0.696
Min–max range of strain means0.800   –   35.3   % 0.650   –   38.2   %
Mean sample size per strain9.8   mice 8.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2379.4462 2379.4462 25.886 < 0.0001
strain 36 35992.5393 999.7928 10.8768 < 0.0001
sex:strain 36 4885.5401 135.7094 1.4764 0.0382
Residuals 610 56071.2747 91.9201


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.0 11.5   18 2.7 0.762 1.0, 39.4 0.58
129S1/SvImJ m 19.6 15.8   14 4.22 0.804 1.2, 47.2 0.62
A/J f 9.64 6.26   16 1.56 0.649 1.8, 24.7 -0.05
A/J m 13.0 10.7   12 3.08 0.821 1.6, 33.0 -0.07
AKR/J f 9.02 5.83   11 1.76 0.647 1.8, 21.9 -0.12
AKR/J m 5.33 6.77   7 2.56 1.27 0.4, 17.3 -0.88
BALB/cByJ f 2.85 4.61   11 1.39 1.62 0.2, 14.1 -0.85
BALB/cByJ m 6.51 7.07   10 2.24 1.09 0.9, 24.7 -0.75
BTBR T+ Itpr3tf/J f 5.37 3.88   15 1.0 0.721 0.9, 17.2 -0.55
BTBR T+ Itpr3tf/J m 11.5 14.7   13 4.08 1.28 0.3, 46.3 -0.23
BUB/BnJ f 6.4 3.4   6 1.39 0.532 1.6, 9.7 -0.43
BUB/BnJ m 12.4 6.0   5 2.68 0.482 6.6, 19.1 -0.14
C3H/HeJ f 4.4 4.84   13 1.34 1.1 -0.66
C3H/HeJ m 6.85 5.67   11 1.71 0.828 0.1, 19.4 -0.72
C57BL/10J f 9.53 14.5   8 5.13 1.52 1.9, 44.9 -0.06
C57BL/10J m 11.5 4.98   8 1.76 0.432 6.2, 20.6 -0.23
C57BL/6J f 3.37 4.15   15 1.07 1.23 0.4, 15.2 -0.79
C57BL/6J m 7.42 4.62   11 1.39 0.622 1.6, 15.0 -0.66
C57BLKS/J f 14.3 7.31   11 2.2 0.511 5.4, 26.2 0.5
C57BLKS/J m 12.3 5.6   8 1.98 0.455 4.3, 18.1 -0.15
C57BR/cdJ f 8.4 4.16   12 1.2 0.496 2.5, 17.7 -0.19
C57BR/cdJ m 13.7 3.57   12 1.03 0.261 8.6, 20.1 0.0
C57L/J f 8.06 2.94   7 1.11 0.364 3.8, 11.4 -0.23
C57L/J m 14.0 8.84   22 1.88 0.631 2.2, 33.4 0.03
C58/J f 23.8 26.9   11 8.1 1.13 4.6, 76.9 1.61
C58/J m 13.0 13.0   13 3.61 0.999 3.8, 51.7 -0.07
CAST/EiJ f 21.3 13.9   14 3.71 0.653 6.2, 43.4 1.32
CAST/EiJ m 20.3 12.2   8 4.31 0.601 6.0, 41.8 0.69
CBA/J f 7.69 4.55   7 1.72 0.591 1.3, 13.8 -0.28
CBA/J m 14.4 7.8   8 2.76 0.54 0.3, 22.6 0.07
CZECHII/EiJ f 10.7 17.2   10 5.43 1.61 0.08
CZECHII/EiJ m 13.3 8.97   4 4.49 0.672 7.4, 26.6 -0.04
DBA/1J f 8.92 2.96   11 0.894 0.332 5.6, 13.6 -0.13
DBA/1J m 25.6 8.64   10 2.73 0.338 10.6, 39.2 1.25
DBA/2J f 5.61 5.77   19 1.32 1.03 -0.52
DBA/2J m 9.35 10.5   16 2.63 1.13 0.2, 34.7 -0.46
FVB/NJ f 7.46 11.0   15 2.84 1.47 0.1, 43.2 -0.31
FVB/NJ m 8.9 6.99   20 1.56 0.785 0.3, 24.5 -0.5
I/LnJ f 5.6 2.39   7 0.903 0.426 2.7, 8.9 -0.52
I/LnJ m 21.2 6.25   5 2.79 0.294 14.2, 27.6 0.79
JF1/MsJ f 7.18 9.51   11 2.87 1.32 2.0, 34.8 -0.34
JF1/MsJ m 12.4 14.1   4 7.04 1.13 1.0, 31.8 -0.14
LP/J f 35.3 15.9   11 4.8 0.452 7.1, 58.4 2.96
LP/J m 36.1 9.29   9 3.1 0.257 23.5, 45.5 2.35
MA/MyJ f 4.74 3.65   8 1.29 0.771 -0.62
MA/MyJ m 8.53 6.47   3 3.74 0.758 4.6, 16.0 -0.54
MOLF/EiJ f 0.8 0.458   3 0.265 0.573 0.3, 1.2 -1.09
MOLF/EiJ m 0.65 0.0707   2   0.05 0.109 0.6, 0.7 -1.37
MSM/MsJ f 3.2 1.9   3 1.1 0.594 1.6, 5.3 -0.81
MSM/MsJ m 2.3 0.0   1   0.0 0.0 2.3, 2.3 -1.19
NOD/ShiLtJ f 4.4 2.86   3 1.65 0.65 2.7, 7.7 -0.66
NOD/ShiLtJ m 5.2 7.09   3 4.1 1.36 0.1, 13.3 -0.89
NZB/BlNJ f 25.5 14.4   7 5.46 0.566 1.7, 46.9 1.81
NZB/BlNJ m 37.1 16.3   5 7.27 0.438 14.8, 53.4 2.46
NZW/LacJ f 28.8 6.99   4 3.49 0.243 21.6, 35.4 2.2
NZW/LacJ m 38.2 19.0   4 9.52 0.498 27.4, 66.7 2.57
PERA/EiJ f 11.5 4.55   12 1.31 0.395 4.3, 22.8 0.17
PERA/EiJ m 15.4 6.61   12 1.91 0.429 7.7, 25.7 0.18
PL/J f 3.07 4.97   3 2.87 1.62 -0.82
PL/J m 9.35 8.27   2   5.85 0.885 3.5, 15.2 -0.46
PWK/PhJ f 3.4 3.39   4 1.7 0.997 0.9, 8.4 -0.78
PWK/PhJ m 13.1 16.6   3 9.61 1.27 1.0, 32.1 -0.06
RIIIS/J f 2.75 1.52   4 0.76 0.553 1.2, 4.2 -0.86
RIIIS/J m 5.12 3.87   12 1.12 0.754 1.1, 11.3 -0.9
SEA/GnJ f 6.32 7.23   12 2.09 1.14 0.1, 27.4 -0.44
SEA/GnJ m 14.6 14.0   13 3.87 0.954 0.2, 41.4 0.1
SJL/J f 7.27 10.2   15 2.64 1.41 0.2, 28.8 -0.33
SJL/J m 10.7 10.7   9 3.56 1.0 0.3, 29.8 -0.31
SM/J f 19.9 2.76   2   1.95 0.139 17.9, 21.8 1.16
SM/J m 34.6 19.7   2   13.9 0.569 20.7, 48.6 2.19
SPRET/EiJ f 1.34 2.23   19 0.512 1.67 0.2, 9.9 -1.02
SPRET/EiJ m 1.1 0.992   5 0.444 0.902 0.3, 2.7 -1.32
SWR/J f 26.6 16.1   4 8.07 0.607 11.8, 49.3 1.94
SWR/J m 7.17 5.81   3 3.35 0.81 2.6, 13.7 -0.68
WSB/EiJ f 2.76 2.19   11 0.659 0.791 0.1, 6.0 -0.86
WSB/EiJ m 8.48 4.56   6 1.86 0.537 2.8, 15.8 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.0389 2.2598 19.4768 10.601
129S1/SvImJ m 19.6429 2.5624 24.675 14.6107
A/J f 9.6375 2.3969 14.3446 4.9304
A/J m 13.0167 2.7677 18.452 7.5813
AKR/J f 9.0182 2.8907 14.6952 3.3412
AKR/J m 5.3286 3.6237 12.4451 0.0
BALB/cByJ f 2.8455 2.8907 8.5225 0.0
BALB/cByJ m 6.51 3.0318 12.4641 0.5559
BTBR T+ Itpr3tf/J f 5.3733 2.4755 10.2348 0.5118
BTBR T+ Itpr3tf/J m 11.4538 2.6591 16.6759 6.2318
BUB/BnJ f 6.4 3.9141 14.0867 0.0
BUB/BnJ m 12.44 4.2877 20.8604 4.0196
C3H/HeJ f 4.4 2.6591 9.6221 0.0
C3H/HeJ m 6.8455 2.8907 12.5225 1.1684
C57BL/10J f 9.525 3.3897 16.1819 2.8681
C57BL/10J m 11.525 3.3897 18.1819 4.8681
C57BL/6J f 3.3733 2.4755 8.2348 0.0
C57BL/6J m 7.4182 2.8907 13.0952 1.7412
C57BLKS/J f 14.3091 2.8907 19.9861 8.6321
C57BLKS/J m 12.3125 3.3897 18.9694 5.6556
C57BR/cdJ f 8.4 2.7677 13.8353 2.9647
C57BR/cdJ m 13.675 2.7677 19.1103 8.2397
C57L/J f 8.0571 3.6237 15.1737 0.9406
C57L/J m 14.0136 2.0441 18.0279 9.9994
C58/J f 23.7818 2.8907 29.4588 18.1048
C58/J m 13.0385 2.6591 18.2606 7.8164
CAST/EiJ f 21.2786 2.5624 26.3107 16.2464
CAST/EiJ m 20.3125 3.3897 26.9694 13.6556
CBA/J f 7.6857 3.6237 14.8022 0.5692
CBA/J m 14.45 3.3897 21.1069 7.7931
CZECHII/EiJ f 10.69 3.0318 16.6441 4.7359
CZECHII/EiJ m 13.35 4.7937 22.7643 3.9357
DBA/1J f 8.9182 2.8907 14.5952 3.2412
DBA/1J m 25.58 3.0318 31.5341 19.6259
DBA/2J f 5.6105 2.1995 9.9301 1.291
DBA/2J m 9.35 2.3969 14.0571 4.6429
FVB/NJ f 7.46 2.4755 12.3215 2.5985
FVB/NJ m 8.9 2.1438 13.1102 4.6898
I/LnJ f 5.6 3.6237 12.7165 0.0
I/LnJ m 21.22 4.2877 29.6404 12.7996
JF1/MsJ f 7.1818 2.8907 12.8588 1.5048
JF1/MsJ m 12.425 4.7937 21.8393 3.0107
LP/J f 35.2545 2.8907 40.9316 29.5775
LP/J m 36.1222 3.1958 42.3984 29.8461
MA/MyJ f 4.7375 3.3897 11.3944 0.0
MA/MyJ m 8.5333 5.5353 19.404 0.0
MOLF/EiJ f 0.8 5.5353 11.6706 0.0
MOLF/EiJ m 0.65 6.7794 13.9638 0.0
NOD/ShiLtJ f 4.4 5.5353 15.2706 0.0
NOD/ShiLtJ m 5.2 5.5353 16.0706 0.0
NZB/BlNJ f 25.5143 3.6237 32.6308 18.3978
NZB/BlNJ m 37.1 4.2877 45.5204 28.6796
NZW/LacJ f 28.775 4.7937 38.1893 19.3607
NZW/LacJ m 38.2 4.7937 47.6143 28.7857
PERA/EiJ f 11.525 2.7677 16.9603 6.0897
PERA/EiJ m 15.4 2.7677 20.8353 9.9647
PL/J f 3.0667 5.5353 13.9373 0.0
PL/J m 9.35 6.7794 22.6638 0.0
PWK/PhJ f 3.4 4.7937 12.8143 0.0
PWK/PhJ m 13.1333 5.5353 24.004 2.2627
RIIIS/J f 2.75 4.7937 12.1643 0.0
RIIIS/J m 5.125 2.7677 10.5603 0.0
SEA/GnJ f 6.3167 2.7677 11.752 0.8813
SEA/GnJ m 14.6308 2.6591 19.8529 9.4087
SJL/J f 7.2667 2.4755 12.1282 2.4052
SJL/J m 10.6889 3.1958 16.9651 4.4127
SM/J f 19.85 6.7794 33.1638 6.5362
SM/J m 34.65 6.7794 47.9638 21.3362
SPRET/EiJ f 1.3368 2.1995 5.6564 0.0
SPRET/EiJ m 1.1 4.2877 9.5204 0.0
SWR/J f 26.575 4.7937 35.9893 17.1607
SWR/J m 7.1667 5.5353 18.0373 0.0
WSB/EiJ f 2.7636 2.8907 8.4406 0.0
WSB/EiJ m 8.4833 3.9141 16.17 0.7966


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 17.3409 1.7082 20.6956 13.9861
A/J both 11.3271 1.8306 14.9222 7.732
AKR/J both 7.1734 2.3177 11.7251 2.6216
BALB/cByJ both 4.6777 2.0945 8.7911 0.5643
BTBR T+ Itpr3tf/J both 8.4136 1.8165 11.981 4.8462
BUB/BnJ both 9.42 2.9028 15.1206 3.7194
C3H/HeJ both 5.6227 1.9639 9.4795 1.766
C57BL/10J both 10.525 2.3969 15.2321 5.8179
C57BL/6J both 5.3958 1.9029 9.1328 1.6587
C57BLKS/J both 13.3108 2.2275 17.6852 8.9364
C57BR/cdJ both 11.0375 1.957 14.8809 7.1941
C57L/J both 11.0354 2.0802 15.1207 6.9501
C58/J both 18.4101 1.9639 22.2669 14.5534
CAST/EiJ both 20.7955 2.1246 24.968 16.6231
CBA/J both 11.0679 2.481 15.9402 6.1955
CZECHII/EiJ both 12.02 2.836 17.5895 6.4505
DBA/1J both 17.2491 2.0945 21.3625 13.1357
DBA/2J both 7.4803 1.6266 10.6746 4.2859
FVB/NJ both 8.18 1.6374 11.3956 4.9644
I/LnJ both 13.41 2.8069 18.9224 7.8976
JF1/MsJ both 9.8034 2.7989 15.3001 4.3067
LP/J both 35.6884 2.1546 39.9198 31.457
MA/MyJ both 6.6354 3.2454 13.0089 0.2619
MOLF/EiJ both 0.725 4.3761 9.319 0.0
NOD/ShiLtJ both 4.8 3.9141 12.4867 0.0
NZB/BlNJ both 31.3071 2.8069 36.8196 25.7947
NZW/LacJ both 33.4875 3.3897 40.1444 26.8306
PERA/EiJ both 13.4625 1.957 17.3059 9.6191
PL/J both 6.2083 4.3761 14.8023 0.0
PWK/PhJ both 8.2667 3.6613 15.4569 1.0764
RIIIS/J both 3.9375 2.7677 9.3728 0.0
SEA/GnJ both 10.4737 1.919 14.2424 6.705
SJL/J both 8.9778 2.0212 12.9472 5.0084
SM/J both 27.25 4.7937 36.6643 17.8357
SPRET/EiJ both 1.2184 2.4095 5.9503 0.0
SWR/J both 16.8708 3.6613 24.0611 9.6806
WSB/EiJ both 5.6235 2.4329 10.4014 0.8456




  GWAS USING LINEAR MIXED MODELS