Project measure / variable:   Chen1   pct_iNKT_CD4_thymus

ID, description, units MPD:52307   pct_iNKT_CD4_thymus   percentage of invariant NK T cells that express CD4, thymus   [%]  
Data set, strains Chen1   inbred   35 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Chen1 - percentage of invariant NK T cells that express CD4, thymus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested35 strains
Mean of the strain means50.2   %
Median of the strain means50.2   %
SD of the strain means± 16.9
Coefficient of variation (CV)0.337
Min–max range of strain means16.8   –   83.7   %
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 40536.5826 1192.2524 63.7024 < 0.0001
Residuals 113 2114.905 18.716


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 83.7 0.839   4 0.419 0.01 82.5, 84.5 1.98
129X1/SvJ m 74.7 4.46   4 2.23 0.0597 72.2, 81.4 1.45
A/J m 48.2 3.43   4 1.72 0.0712 45.2, 52.8 -0.12
AKR/J m 36.6 6.21   4 3.11 0.17 31.8, 45.7 -0.8
ALR/LtJ m 54.2 5.75   4 2.88 0.106 47.5, 60.0 0.24
BALB/cByJ m 59.3 3.7   4 1.85 0.0625 56.1, 64.4 0.54
BALB/cJ m 53.4 5.61   4 2.81 0.105 46.7, 60.0 0.19
BPL/1J m 53.5 13.5   4 6.73 0.252 35.6, 64.1 0.2
BTBR T+ Itpr3tf/J m 50.2 2.83   4 1.42 0.0564 46.5, 52.9 0.0
BUB/BnJ m 21.2 2.92   4 1.46 0.138 17.9, 24.4 -1.71
C3H/HeJ m 49.6 2.27   4 1.14 0.0458 47.7, 52.9 -0.03
C57BL/10J m 52.0 3.36   5 1.5 0.0645 49.1, 56.7 0.11
C57BL/6J m 55.0 2.39   4 1.19 0.0434 51.5, 56.8 0.28
C57BLKS/J m 29.2 2.09   4 1.05 0.0717 26.5, 31.0 -1.24
C57L/J m 79.2 2.12   5 0.947 0.0267 76.8, 81.6 1.71
CAST/EiJ m 77.0 1.45   4 0.727 0.0189 75.0, 78.3 1.58
CBA/J m 69.0 1.69   4 0.843 0.0244 67.3, 71.0 1.11
DBA/1LacJ m 52.4 1.36   4 0.68 0.0259 50.8, 53.9 0.13
DBA/2J m 67.0 3.03   5 1.36 0.0453 62.4, 69.4 0.99
FVB/NJ m 65.4 1.77   4 0.884 0.027 63.4, 67.7 0.9
ICR/HaJ m 38.9 1.98   4 0.992 0.051 37.4, 41.8 -0.67
KK/HlJ m 29.0 5.59   5 2.5 0.193 20.9, 34.4 -1.25
LP/J m 76.2 1.2   4 0.598 0.0157 75.0, 77.6 1.54
MOLF/EiJ m 16.8 3.27   4 1.64 0.194 14.7, 21.7 -1.97
MRL/MpJ m 50.6 5.48   5 2.45 0.108 45.2, 59.2 0.02
NOD/LtDVS m 49.3 5.62   5 2.51 0.114 40.4, 55.1 -0.05
NON/ShiLtJ m 34.6 2.54   4 1.27 0.0735 31.5, 37.2 -0.92
NZB/BlNJ m 40.1 3.32   4 1.66 0.0829 36.6, 44.5 -0.6
NZO/HlLtJ m 28.0 1.36   4 0.682 0.0487 26.3, 29.2 -1.31
NZW/LacJ m 50.0 1.16   4 0.581 0.0232 48.4, 51.2 -0.01
PL/J m 37.2 6.87   4 3.43 0.185 28.0, 44.6 -0.77
SJL/J m 54.6 4.25   5 1.9 0.0778 48.8, 59.0 0.26
SM/J m 44.2 1.43   5 0.637 0.0323 42.8, 46.2 -0.35
SWR/J m 27.2 5.33   4 2.67 0.196 21.8, 34.5 -1.36
WSB/EiJ m 49.1 6.05   4 3.02 0.123 41.1, 55.8 -0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 83.65 2.1631 87.9355 79.3645
129X1/SvJ m 74.725 2.1631 79.0105 70.4395
A/J m 48.2 2.1631 52.4855 43.9145
AKR/J m 36.6 2.1631 40.8855 32.3145
ALR/LtJ m 54.175 2.1631 58.4605 49.8895
BALB/cByJ m 59.3 2.1631 63.5855 55.0145
BALB/cJ m 53.4 2.1631 57.6855 49.1145
BPL/1J m 53.475 2.1631 57.7605 49.1895
BTBR T+ Itpr3tf/J m 50.25 2.1631 54.5355 45.9645
BUB/BnJ m 21.225 2.1631 25.5105 16.9395
C3H/HeJ m 49.6 2.1631 53.8855 45.3145
C57BL/10J m 52.0 1.9347 55.8331 48.1669
C57BL/6J m 55.025 2.1631 59.3105 50.7395
C57BLKS/J m 29.2 2.1631 33.4855 24.9145
C57L/J m 79.16 1.9347 82.9931 75.3269
CAST/EiJ m 77.0 2.1631 81.2855 72.7145
CBA/J m 69.025 2.1631 73.3105 64.7395
DBA/1LacJ m 52.425 2.1631 56.7105 48.1395
DBA/2J m 67.04 1.9347 70.8731 63.2069
FVB/NJ m 65.425 2.1631 69.7105 61.1395
ICR/HaJ m 38.9 2.1631 43.1855 34.6145
KK/HlJ m 28.98 1.9347 32.8131 25.1469
LP/J m 76.175 2.1631 80.4605 71.8895
MOLF/EiJ m 16.825 2.1631 21.1105 12.5395
MRL/MpJ m 50.6 1.9347 54.4331 46.7669
NOD/LtDVS m 49.34 1.9347 53.1731 45.5069
NON/ShiLtJ m 34.625 2.1631 38.9105 30.3395
NZB/BlNJ m 40.05 2.1631 44.3355 35.7645
NZO/HlLtJ m 28.0 2.1631 32.2855 23.7145
NZW/LacJ m 49.975 2.1631 54.2605 45.6895
PL/J m 37.175 2.1631 41.4605 32.8895
SJL/J m 54.58 1.9347 58.4131 50.7469
SM/J m 44.18 1.9347 48.0131 40.3469
SWR/J m 27.25 2.1631 31.5355 22.9645
WSB/EiJ m 49.075 2.1631 53.3605 44.7895




  GWAS USING LINEAR MIXED MODELS