Project measure / variable:   HMDPpheno6   SMDA_ADMA

ID, description, units MPD:50165   SMDA_ADMA   liver dimethylarginine (SDMA + ADMA) (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver dimethylarginine (SDMA + ADMA) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means991389   None
Median of the strain means931136   None
SD of the strain means± 316212
Coefficient of variation (CV)0.319
Min–max range of strain means503217   –   2126894   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 4080198724856.65 194295177374.126 9.2717 < 0.0001
Residuals 34 712497189576.368 20955799693.4226


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 961367.0 0.0   1   0.0 0.0 961367.0, 961367.0 -0.09
A/J m 956449.0 289510.0   2   204714.0 0.303 751734.0, 1161163.0 -0.11
AKR/J m 875760.0 0.0   1   0.0 0.0 875760.0, 875760.0 -0.37
AXB10/PgnJ m 688029.0 0.0   1   0.0 0.0 688029.0, 688029.0 -0.96
AXB12/PgnJ m 855806.0 0.0   1   0.0 0.0 855806.0, 855806.0 -0.43
AXB13/PgnJ m 1171965.0 0.0   1   0.0 0.0 1171965.0, 1171965.0 0.57
AXB15/PgnJ m 745486.0 0.0   1   0.0 0.0 745486.0, 745486.0 -0.78
AXB19a/PgnJ m 1361575.0 0.0   1   0.0 0.0 1361575.0, 1361575.0 1.17
AXB19b/PgnJ m 2126894.0 288186.0   2   203778.0 0.135 1923116.0, 2330672.0 3.59
AXB19/PgnJ m 1811836.0 0.0   1   0.0 0.0 1811836.0, 1811836.0 2.59
AXB1/PgnJ m 1939218.0 0.0   1   0.0 0.0 1939218.0, 1939218.0 3.0
AXB23/PgnJ m 1133914.0 0.0   1   0.0 0.0 1133914.0, 1133914.0 0.45
AXB24/PgnJ m 771634.0 73285.0   2   51821.0 0.095 719813.0, 823454.0 -0.69
AXB2/PgnJ m 1168204.0 0.0   1   0.0 0.0 1168204.0, 1168204.0 0.56
AXB4/PgnJ m 1202536.0 0.0   1   0.0 0.0 1202536.0, 1202536.0 0.67
AXB5/PgnJ m 679817.0 0.0   1   0.0 0.0 679817.0, 679817.0 -0.99
AXB6/PgnJ m 1715826.0 0.0   1   0.0 0.0 1715826.0, 1715826.0 2.29
AXB8/PgnJ m 1051844.0 0.0   1   0.0 0.0 1051844.0, 1051844.0 0.19
BALB/cJ m 1083486.0 168188.0   3 97104.0 0.155 948706.0, 1271968.0 0.29
BTBR T+ Itpr3tf/J m 1320653.0 0.0   1   0.0 0.0 1320653.0, 1320653.0 1.04
BUB/BnJ m 1644948.0 0.0   1   0.0 0.0 1644948.0, 1644948.0 2.07
BXA11/PgnJ m 751000.0 0.0   1   0.0 0.0 751000.0, 751000.0 -0.76
BXA12/PgnJ m 635455.0 0.0   1   0.0 0.0 635455.0, 635455.0 -1.13
BXA13/PgnJ m 816471.0 0.0   1   0.0 0.0 816471.0, 816471.0 -0.55
BXA14/PgnJ m 1219274.0 0.0   1   0.0 0.0 1219274.0, 1219274.0 0.72
BXA16/PgnJ m 916538.0 38766.0   2   27411.0 0.0423 889126.0, 943949.0 -0.24
BXA1/PgnJ m 1073526.0 0.0   1   0.0 0.0 1073526.0, 1073526.0 0.26
BXA24/PgnJ m 1394576.0 0.0   1   0.0 0.0 1394576.0, 1394576.0 1.28
BXA25/PgnJ m 704500.0 0.0   1   0.0 0.0 704500.0, 704500.0 -0.91
BXA26/PgnJ m 1211693.0 0.0   1   0.0 0.0 1211693.0, 1211693.0 0.7
BXA2/PgnJ m 1374781.0 0.0   1   0.0 0.0 1374781.0, 1374781.0 1.21
BXA4/PgnJ m 910776.0 0.0   1   0.0 0.0 910776.0, 910776.0 -0.25
BXA7/PgnJ m 1531223.0 0.0   1   0.0 0.0 1531223.0, 1531223.0 1.71
BXA8/PgnJ m 503217.0 0.0   1   0.0 0.0 503217.0, 503217.0 -1.54
BXD11/TyJ m 650679.0 0.0   1   0.0 0.0 650679.0, 650679.0 -1.08
BXD12/TyJ m 1053228.0 0.0   1   0.0 0.0 1053228.0, 1053228.0 0.2
BXD13/TyJ m 722632.0 0.0   1   0.0 0.0 722632.0, 722632.0 -0.85
BXD14/TyJ m 787291.0 0.0   1   0.0 0.0 787291.0, 787291.0 -0.65
BXD15/TyJ m 1056891.0 0.0   1   0.0 0.0 1056891.0, 1056891.0 0.21
BXD18/TyJ m 888946.0 0.0   1   0.0 0.0 888946.0, 888946.0 -0.32
BXD19/TyJ m 697506.0 139079.0   2   98344.0 0.199 599162.0, 795849.0 -0.93
BXD1/TyJ m 790447.0 0.0   1   0.0 0.0 790447.0, 790447.0 -0.64
BXD20/TyJ m 1015346.0 0.0   1   0.0 0.0 1015346.0, 1015346.0 0.08
BXD21/TyJ m 586070.0 0.0   1   0.0 0.0 586070.0, 586070.0 -1.28
BXD22/TyJ m 1655351.0 0.0   1   0.0 0.0 1655351.0, 1655351.0 2.1
BXD24/TyJ m 764873.0 0.0   1   0.0 0.0 764873.0, 764873.0 -0.72
BXD24/TyJ-Cep290rd16/J m 695545.0 0.0   1   0.0 0.0 695545.0, 695545.0 -0.94
BXD28/TyJ m 944649.0 211300.0   2   149412.0 0.224 795237.0, 1094060.0 -0.15
BXD29-Tlr4lps-2J/J m 992973.0 0.0   1   0.0 0.0 992973.0, 992973.0 0.01
BXD2/TyJ m 1439654.0 0.0   1   0.0 0.0 1439654.0, 1439654.0 1.42
BXD32/TyJ m 1155532.0 0.0   1   0.0 0.0 1155532.0, 1155532.0 0.52
BXD33/TyJ m 956152.0 0.0   1   0.0 0.0 956152.0, 956152.0 -0.11
BXD34/TyJ m 794583.0 0.0   1   0.0 0.0 794583.0, 794583.0 -0.62
BXD36/TyJ m 622512.0 0.0   1   0.0 0.0 622512.0, 622512.0 -1.17
BXD38/TyJ m 693733.0 0.0   1   0.0 0.0 693733.0, 693733.0 -0.94
BXD39/TyJ m 642955.0 0.0   1   0.0 0.0 642955.0, 642955.0 -1.1
BXD40/TyJ m 943374.0 0.0   1   0.0 0.0 943374.0, 943374.0 -0.15
BXD42/TyJ m 826560.0 0.0   1   0.0 0.0 826560.0, 826560.0 -0.52
BXD5/TyJ m 918372.0 0.0   1   0.0 0.0 918372.0, 918372.0 -0.23
BXD6/TyJ m 795129.0 0.0   1   0.0 0.0 795129.0, 795129.0 -0.62
BXD8/TyJ m 913292.0 0.0   1   0.0 0.0 913292.0, 913292.0 -0.25
BXD9/TyJ m 866023.0 0.0   1   0.0 0.0 866023.0, 866023.0 -0.4
BXH10/TyJ m 918897.0 0.0   1   0.0 0.0 918897.0, 918897.0 -0.23
BXH19/TyJ m 1334224.0 0.0   1   0.0 0.0 1334224.0, 1334224.0 1.08
BXH20/KccJ m 1083468.0 0.0   1   0.0 0.0 1083468.0, 1083468.0 0.29
BXH22/KccJ m 819289.0 0.0   1   0.0 0.0 819289.0, 819289.0 -0.54
BXH2/TyJ m 1257440.0 0.0   1   0.0 0.0 1257440.0, 1257440.0 0.84
BXH4/TyJ m 1057914.0 169898.0   2   120136.0 0.161 937778.0, 1178050.0 0.21
BXH6/TyJ m 1211391.0 0.0   1   0.0 0.0 1211391.0, 1211391.0 0.7
BXH7/TyJ m 662625.0 0.0   1   0.0 0.0 662625.0, 662625.0 -1.04
BXH8/TyJ m 961861.0 0.0   1   0.0 0.0 961861.0, 961861.0 -0.09
BXH9/TyJ m 722897.0 0.0   1   0.0 0.0 722897.0, 722897.0 -0.85
C3H/HeJ m 895932.0 115184.0   2   81447.0 0.129 814484.0, 977379.0 -0.3
C57BL/6J m 950703.0 107765.0   5 48194.0 0.113 798384.0, 1094196.0 -0.13
C57L/J m 756239.0 0.0   1   0.0 0.0 756239.0, 756239.0 -0.74
C58/J m 1747740.0 0.0   1   0.0 0.0 1747740.0, 1747740.0 2.39
CAST/EiJ m 672120.0 0.0   1   0.0 0.0 672120.0, 672120.0 -1.01
CBA/J m 827445.0 0.0   1   0.0 0.0 827445.0, 827445.0 -0.52
CE/J m 802518.0 0.0   1   0.0 0.0 802518.0, 802518.0 -0.6
CXB11/HiAJ m 656349.0 142330.0   2   100643.0 0.217 555706.0, 756992.0 -1.06
CXB12/HiAJ m 1140786.0 155092.0   2   109667.0 0.136 1031120.0, 1250453.0 0.47
CXB13/HiAJ m 957769.0 62078.0   3 35841.0 0.0648 901862.0, 1024575.0 -0.11
CXB1/ByJ m 983045.0 73339.0   3 42342.0 0.0746 935756.0, 1067528.0 -0.03
CXB2/ByJ m 1062828.0 119625.0   3 69066.0 0.113 925989.0, 1147575.0 0.23
CXB3/ByJ m 1230469.0 319438.0   2   225876.0 0.26 1004593.0, 1456346.0 0.76
CXB4/ByJ m 710341.0 82911.0   2   58627.0 0.117 651714.0, 768968.0 -0.89
CXB6/ByJ m 1126405.0 182903.0   3 105599.0 0.162 915216.0, 1233668.0 0.43
CXB7/ByJ m 904611.0 18647.0   2   13185.0 0.0206 891425.0, 917796.0 -0.27
CXB8/HiAJ m 1090794.0 81986.0   3 47335.0 0.0752 1036896.0, 1185145.0 0.31
CXB9/HiAJ m 840627.0 67597.0   3 39027.0 0.0804 784258.0, 915569.0 -0.48
DBA/2J m 662309.0 114685.0   4 57343.0 0.173 573192.0, 816518.0 -1.04
FVB/NJ m 1125531.0 0.0   1   0.0 0.0 1125531.0, 1125531.0 0.42
I/LnJ m 1572905.0 0.0   1   0.0 0.0 1572905.0, 1572905.0 1.84
KK/HlJ m 556750.0 0.0   1   0.0 0.0 556750.0, 556750.0 -1.37
LG/J m 577834.0 0.0   1   0.0 0.0 577834.0, 577834.0 -1.31
LP/J m 1145311.0 0.0   1   0.0 0.0 1145311.0, 1145311.0 0.49
MA/MyJ m 902258.0 0.0   1   0.0 0.0 902258.0, 902258.0 -0.28
NOD/ShiLtJ m 1054514.0 0.0   1   0.0 0.0 1054514.0, 1054514.0 0.2
NON/ShiLtJ m 808695.0 0.0   1   0.0 0.0 808695.0, 808695.0 -0.58
NZW/LacJ m 509295.0 0.0   1   0.0 0.0 509295.0, 509295.0 -1.52
PL/J m 1055863.0 0.0   1   0.0 0.0 1055863.0, 1055863.0 0.2
RIIIS/J m 903000.0 0.0   1   0.0 0.0 903000.0, 903000.0 -0.28
SEA/GnJ m 1132216.0 0.0   1   0.0 0.0 1132216.0, 1132216.0 0.45
SJL/J m 697766.0 0.0   1   0.0 0.0 697766.0, 697766.0 -0.93
SM/J m 1006807.0 0.0   1   0.0 0.0 1006807.0, 1006807.0 0.05
SWR/J m 808913.0 0.0   1   0.0 0.0 808913.0, 808913.0 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 956448.9 102361.6132 1164472.7263 748425.0737
AXB19b/PgnJ m 2126893.65 102361.6132 2334917.4763 1918869.8237
AXB24/PgnJ m 771633.55 102361.6132 979657.3763 563609.7237
BALB/cJ m 1083486.3667 83577.9072 1253337.1096 913635.6237
BXA16/PgnJ m 916537.9 102361.6132 1124561.7263 708514.0737
BXD19/TyJ m 697505.7 102361.6132 905529.5263 489481.8737
BXD28/TyJ m 944648.55 102361.6132 1152672.3763 736624.7237
BXH4/TyJ m 1057914.5 102361.6132 1265938.3263 849890.6737
C3H/HeJ m 895931.6 102361.6132 1103955.4263 687907.7737
C57BL/6J m 950702.62 64739.1685 1082268.4397 819136.8003
CXB11/HiAJ m 656349.25 102361.6132 864373.0763 448325.4237
CXB12/HiAJ m 1140786.4 102361.6132 1348810.2263 932762.5737
CXB13/HiAJ m 957768.9 83577.9072 1127619.6429 787918.1571
CXB1/ByJ m 983044.7 83577.9072 1152895.4429 813193.9571
CXB2/ByJ m 1062827.7333 83577.9072 1232678.4763 892976.9904
CXB3/ByJ m 1230469.1 102361.6132 1438492.9263 1022445.2737
CXB4/ByJ m 710340.8 102361.6132 918364.6263 502316.9737
CXB6/ByJ m 1126405.4333 83577.9072 1296256.1763 956554.6904
CXB7/ByJ m 904610.6 102361.6132 1112634.4263 696586.7737
CXB8/HiAJ m 1090794.2667 83577.9072 1260645.0096 920943.5237
CXB9/HiAJ m 840626.8 83577.9072 1010477.5429 670776.0571
DBA/2J m 662309.45 72380.5908 809404.5082 515214.3918




  GWAS USING LINEAR MIXED MODELS