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Project measure / variable:   Schughart2   susceptibility

ID, description, units MPD:49607   susceptibility   susceptibility to viral infection (0=susceptible; 1=resistant)   [designation]  
influenza A (H1N1) virus study
Data set, strains Schughart2   BXD w/par   56 strains     sex: f     age: 9-18wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Schughart2 - susceptibility to viral infection (0=susceptible; 1=resistant)



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested56 strains
Mean of the strain means0.518   designation
Median of the strain means0.585   designation
SD of the strain means± 0.431
Coefficient of variation (CV)0.833
Min–max range of strain means0   –   1.00   designation
Mean sample size per strain6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 55 75.7726 1.3777 18.278 < 0.0001
Residuals 355 26.7578 0.0754


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.828 0.384   29 0.0714 0.465 0.72
BXD100/RwwJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.12
BXD102/RwwJ f 0.4 0.548   5 0.245 1.37 -0.27
BXD11/TyJ f 1.0 0.0   8 0.0 0.0 1.0, 1.0 1.12
BXD12/TyJ f 0.0 0.0   3 0.0 0.0 -1.2
BXD13/TyJ f 1.0 0.0   6 0.0 0.0 1.0, 1.0 1.12
BXD14/TyJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD15/TyJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD16/TyJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD18/TyJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD19/TyJ f 0.2 0.447   5 0.2 2.24 -0.74
BXD1/TyJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.12
BXD20/TyJ f 0.8 0.447   5 0.2 0.559 0.65
BXD21/TyJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 1.12
BXD23/TyJ f 0.889 0.333   9 0.111 0.375 0.86
BXD28/TyJ f 0.0 0.0   4 0.0 0.0 -1.2
BXD2/TyJ f 0.6 0.548   5 0.245 0.913 0.19
BXD31/TyJ f 0.0 0.0   7 0.0 0.0 -1.2
BXD32/TyJ f 0.571 0.535   7 0.202 0.935 0.12
BXD34/TyJ f 0.0 0.0   3 0.0 0.0 -1.2
BXD36/TyJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD38/TyJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD39/TyJ f 1.0 0.0   8 0.0 0.0 1.0, 1.0 1.12
BXD40/TyJ f 0.25 0.452   12 0.131 1.81 -0.62
BXD42/TyJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 1.12
BXD43/RwwJ f 1.0 0.0   7 0.0 0.0 1.0, 1.0 1.12
BXD44/RwwJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD48a/RwwJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 1.12
BXD51/RwwJ f 0.0 0.0   6 0.0 0.0 -1.2
BXD55/RwwJ f 0.2 0.447   5 0.2 2.24 -0.74
BXD56/RwwJ f 0.2 0.447   5 0.2 2.24 -0.74
BXD5/TyJ f 0.5 0.577   4 0.289 1.15 -0.04
BXD60/RwwJ f 0.8 0.447   5 0.2 0.559 0.65
BXD61/RwwJ f 0.833 0.408   6 0.167 0.49 0.73
BXD62/RwwJ f 0.2 0.447   5 0.2 2.24 -0.74
BXD65a/RwwJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 1.12
BXD65b/RwwJ f 0.8 0.447   5 0.2 0.559 0.65
BXD65/RwwJ f 0.5 0.535   8 0.189 1.07 -0.04
BXD67/RwwJ f 0.8 0.447   5 0.2 0.559 0.65
BXD69/RwwJ f 0.8 0.447   5 0.2 0.559 0.65
BXD70/RwwJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD71/RwwJ f 0.8 0.447   5 0.2 0.559 0.65
BXD73a/RwwJ f 0.0 0.0   4 0.0 0.0 -1.2
BXD73b/RwwJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD73/RwwJ f 0.2 0.447   5 0.2 2.24 -0.74
BXD74/RwwJ f 0.0 0.0   5 0.0 0.0 -1.2
BXD75/RwwJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 1.12
BXD79/RwwJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.12
BXD84/RwwJ f 0.8 0.447   5 0.2 0.559 0.65
BXD87/RwwJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.12
BXD89/RwwJ f 0.0 0.0   4 0.0 0.0 -1.2
BXD8/TyJ f 1.0 0.0   8 0.0 0.0 1.0, 1.0 1.12
BXD98/RwwJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 1.12
BXD9/TyJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.12
C57BL/6J f 1.0 0.0   39 0.0 0.0 1.0, 1.0 1.12
DBA/2J f 0.0333 0.181   60 0.0234 5.43 -1.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.8276 0.051 0.9278 0.7273
BXD100/RwwJ f 1.0 0.1228 1.2415 0.7585
BXD102/RwwJ f 0.4 0.1228 0.6415 0.1585
BXD11/TyJ f 1.0 0.0971 1.1909 0.8091
BXD12/TyJ f 0.0 0.1585 0.3117 -0.3117
BXD13/TyJ f 1.0 0.1121 1.2204 0.7796
BXD14/TyJ f 0.0 0.1228 0.2415 -0.2415
BXD15/TyJ f 0.0 0.1228 0.2415 -0.2415
BXD16/TyJ f 0.0 0.1228 0.2415 -0.2415
BXD18/TyJ f 0.0 0.1228 0.2415 -0.2415
BXD19/TyJ f 0.2 0.1228 0.4415 -0.0415
BXD1/TyJ f 1.0 0.1228 1.2415 0.7585
BXD20/TyJ f 0.8 0.1228 1.0415 0.5585
BXD21/TyJ f 1.0 0.1373 1.27 0.73
BXD23/TyJ f 0.8889 0.0915 1.0689 0.7089
BXD28/TyJ f 0.0 0.1373 0.27 -0.27
BXD2/TyJ f 0.6 0.1228 0.8415 0.3585
BXD31/TyJ f 0.0 0.1038 0.2041 -0.2041
BXD32/TyJ f 0.5714 0.1038 0.7755 0.3674
BXD34/TyJ f 0.0 0.1585 0.3117 -0.3117
BXD36/TyJ f 0.0 0.1228 0.2415 -0.2415
BXD38/TyJ f 0.0 0.1228 0.2415 -0.2415
BXD39/TyJ f 1.0 0.0971 1.1909 0.8091
BXD40/TyJ f 0.25 0.0793 0.4059 0.0941
BXD42/TyJ f 1.0 0.1373 1.27 0.73
BXD43/RwwJ f 1.0 0.1038 1.2041 0.7959
BXD44/RwwJ f 0.0 0.1228 0.2415 -0.2415
BXD48a/RwwJ f 1.0 0.1373 1.27 0.73
BXD51/RwwJ f 0.0 0.1121 0.2204 -0.2204
BXD55/RwwJ f 0.2 0.1228 0.4415 -0.0415
BXD56/RwwJ f 0.2 0.1228 0.4415 -0.0415
BXD5/TyJ f 0.5 0.1373 0.77 0.23
BXD60/RwwJ f 0.8 0.1228 1.0415 0.5585
BXD61/RwwJ f 0.8333 0.1121 1.0538 0.6129
BXD62/RwwJ f 0.2 0.1228 0.4415 -0.0415
BXD65a/RwwJ f 1.0 0.1373 1.27 0.73
BXD65b/RwwJ f 0.8 0.1228 1.0415 0.5585
BXD65/RwwJ f 0.5 0.0971 0.6909 0.3091
BXD67/RwwJ f 0.8 0.1228 1.0415 0.5585
BXD69/RwwJ f 0.8 0.1228 1.0415 0.5585
BXD70/RwwJ f 0.0 0.1228 0.2415 -0.2415
BXD71/RwwJ f 0.8 0.1228 1.0415 0.5585
BXD73a/RwwJ f 0.0 0.1373 0.27 -0.27
BXD73b/RwwJ f 0.0 0.1228 0.2415 -0.2415
BXD73/RwwJ f 0.2 0.1228 0.4415 -0.0415
BXD74/RwwJ f 0.0 0.1228 0.2415 -0.2415
BXD75/RwwJ f 1.0 0.1373 1.27 0.73
BXD79/RwwJ f 1.0 0.1228 1.2415 0.7585
BXD84/RwwJ f 0.8 0.1228 1.0415 0.5585
BXD87/RwwJ f 1.0 0.1228 1.2415 0.7585
BXD89/RwwJ f 0.0 0.1373 0.27 -0.27
BXD8/TyJ f 1.0 0.0971 1.1909 0.8091
BXD98/RwwJ f 1.0 0.1373 1.27 0.73
BXD9/TyJ f 1.0 0.1228 1.2415 0.7585
C57BL/6J f 1.0 0.044 1.0865 0.9135
DBA/2J f 0.0333 0.0354 0.103 -0.0364




  GWAS USING LINEAR MIXED MODELS