Project measure / variable:   Rice1   Vsig8

ID, description, units MPD:49248   Vsig8   VSIG8, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - VSIG8, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means20.4   None 19.3   None
Median of the strain means21.0   None 19.0   None
SD of the strain means± 4.28 ± 3.72
Coefficient of variation (CV)0.210 0.192
Min–max range of strain means15.0   –   29.5   None 13.0   –   23.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13.0909 13.0909 1.1034 0.3049
strain 10 534.1818 53.4182 4.5027 0.0016
sex:strain 10 108.9091 10.8909 0.918 0.5347
Residuals 22 261.0 11.8636


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 15.0 1.41   2   1.0 0.0943 14.0, 16.0 -1.26
C3H/HeJ m 18.0 4.24   2   3.0 0.236 15.0, 21.0 -0.35
C57BL/6J f 21.0 1.41   2   1.0 0.0673 20.0, 22.0 0.14
C57BL/6J m 21.5 3.54   2   2.5 0.164 19.0, 24.0 0.59
CAST/EiJ f 18.0 0.0   2   0.0 0.0 18.0, 18.0 -0.56
CAST/EiJ m 14.0 4.24   2   3.0 0.303 11.0, 17.0 -1.43
DBA/1J f 23.0 1.41   2   1.0 0.0615 22.0, 24.0 0.6
DBA/1J m 23.5 2.12   2   1.5 0.0903 22.0, 25.0 1.13
MRL/MpJ f 22.5 4.95   2   3.5 0.22 19.0, 26.0 0.49
MRL/MpJ m 16.5 4.95   2   3.5 0.3 13.0, 20.0 -0.76
MRL/MpJ Faslpr-Foxq1sa-J/J f 22.5 0.707   2   0.5 0.0314 22.0, 23.0 0.49
MRL/MpJ Faslpr-Foxq1sa-J/J m 23.0 5.66   2   4.0 0.246 19.0, 27.0 0.99
NOD/ShiLtJ f 15.5 0.707   2   0.5 0.0456 15.0, 16.0 -1.15
NOD/ShiLtJ m 18.5 3.54   2   2.5 0.191 16.0, 21.0 -0.22
NZW/LacJ f 19.0 0.0   2   0.0 0.0 19.0, 19.0 -0.33
NZW/LacJ m 19.0 1.41   2   1.0 0.0744 18.0, 20.0 -0.09
SB/LeJ f 29.5 4.95   2   3.5 0.168 26.0, 33.0 2.12
SB/LeJ m 23.0 7.07   2   5.0 0.307 18.0, 28.0 0.99
STOCK a/a Tmem79ma Flgft/J f 16.0 2.83   2   2.0 0.177 14.0, 18.0 -1.03
STOCK a/a Tmem79ma Flgft/J m 13.0 4.24   2   3.0 0.326 10.0, 16.0 -1.7
WSB/EiJ f 22.5 2.12   2   1.5 0.0943 21.0, 24.0 0.49
WSB/EiJ m 22.5 0.707   2   0.5 0.0314 22.0, 23.0 0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 15.0 2.4355 20.051 9.949
C3H/HeJ m 18.0 2.4355 23.051 12.949
C57BL/6J f 21.0 2.4355 26.051 15.949
C57BL/6J m 21.5 2.4355 26.551 16.449
CAST/EiJ f 18.0 2.4355 23.051 12.949
CAST/EiJ m 14.0 2.4355 19.051 8.949
DBA/1J f 23.0 2.4355 28.051 17.949
DBA/1J m 23.5 2.4355 28.551 18.449
MRL/MpJ f 22.5 2.4355 27.551 17.449
MRL/MpJ m 16.5 2.4355 21.551 11.449
MRL/MpJ Faslpr-Foxq1sa-J/J f 22.5 2.4355 27.551 17.449
MRL/MpJ Faslpr-Foxq1sa-J/J m 23.0 2.4355 28.051 17.949
NOD/ShiLtJ f 15.5 2.4355 20.551 10.449
NOD/ShiLtJ m 18.5 2.4355 23.551 13.449
NZW/LacJ f 19.0 2.4355 24.051 13.949
NZW/LacJ m 19.0 2.4355 24.051 13.949
SB/LeJ f 29.5 2.4355 34.551 24.449
SB/LeJ m 23.0 2.4355 28.051 17.949
STOCK a/a Tmem79ma Flgft/J f 16.0 2.4355 21.051 10.949
STOCK a/a Tmem79ma Flgft/J m 13.0 2.4355 18.051 7.949
WSB/EiJ f 22.5 2.4355 27.551 17.449
WSB/EiJ m 22.5 2.4355 27.551 17.449


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 16.5 1.7222 20.0716 12.9284
C57BL/6J both 21.25 1.7222 24.8216 17.6784
CAST/EiJ both 16.0 1.7222 19.5716 12.4284
DBA/1J both 23.25 1.7222 26.8216 19.6784
MRL/MpJ both 19.5 1.7222 23.0716 15.9284
MRL/MpJ Faslpr-Foxq1sa-J/J both 22.75 1.7222 26.3216 19.1784
NOD/ShiLtJ both 17.0 1.7222 20.5716 13.4284
NZW/LacJ both 19.0 1.7222 22.5716 15.4284
SB/LeJ both 26.25 1.7222 29.8216 22.6784
STOCK a/a Tmem79ma Flgft/J both 14.5 1.7222 18.0716 10.9284
WSB/EiJ both 22.5 1.7222 26.0716 18.9284




  GWAS USING LINEAR MIXED MODELS