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Project measure / variable:   Rice1   Mlf1

ID, description, units MPD:49242   Mlf1   MLF1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - MLF1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.795   None 0.818   None
Median of the strain means0.750   None 0.750   None
SD of the strain means± 0.705 ± 0.681
Coefficient of variation (CV)0.887 0.832
Min–max range of strain means0   –   2.00   None 0   –   2.00   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0057 0.0057 0.0133 0.9091
strain 10 14.0455 1.4045 3.296 0.0094
sex:strain 10 5.1818 0.5182 1.216 0.334
Residuals 22 9.375 0.4261


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.75 1.06   2   0.75 1.41 -0.06
C3H/HeJ m 0.5 0.707   2   0.5 1.41 -0.47
C57BL/6J f 1.5 0.0   2   0.0 0.0 1.5, 1.5 1.0
C57BL/6J m 1.25 0.354   2   0.25 0.283 1.0, 1.5 0.63
CAST/EiJ f 0.5 0.707   2   0.5 1.41 -0.42
CAST/EiJ m 0.75 1.06   2   0.75 1.41 -0.1
DBA/1J f 1.0 1.41   2   1.0 1.41 0.29
DBA/1J m 0.75 1.06   2   0.75 1.41 -0.1
MRL/MpJ f 0.0 0.0   2   0.0 0.0 -1.13
MRL/MpJ m 0.0 0.0   2   0.0 0.0 -1.2
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.75 1.06   2   0.75 1.41 -0.06
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.2
NOD/ShiLtJ f 0.5 0.707   2   0.5 1.41 -0.42
NOD/ShiLtJ m 0.75 1.06   2   0.75 1.41 -0.1
NZW/LacJ f 0.0 0.0   2   0.0 0.0 -1.13
NZW/LacJ m 0.0 0.0   2   0.0 0.0 -1.2
SB/LeJ f 1.75 0.354   2   0.25 0.202 1.5, 2.0 1.35
SB/LeJ m 1.5 0.0   2   0.0 0.0 1.5, 1.5 1.0
STOCK a/a Tmem79ma Flgft/J f 2.0 0.0   2   0.0 0.0 2.0, 2.0 1.71
STOCK a/a Tmem79ma Flgft/J m 1.5 0.0   2   0.0 0.0 1.5, 1.5 1.0
WSB/EiJ f 0.0 0.0   2   0.0 0.0 -1.13
WSB/EiJ m 2.0 0.0   2   0.0 0.0 2.0, 2.0 1.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.75 0.4616 1.7073 -0.2073
C3H/HeJ m 0.5 0.4616 1.4573 -0.4573
C57BL/6J f 1.5 0.4616 2.4573 0.5427
C57BL/6J m 1.25 0.4616 2.2073 0.2927
CAST/EiJ f 0.5 0.4616 1.4573 -0.4573
CAST/EiJ m 0.75 0.4616 1.7073 -0.2073
DBA/1J f 1.0 0.4616 1.9573 0.0427
DBA/1J m 0.75 0.4616 1.7073 -0.2073
MRL/MpJ f 0.0 0.4616 0.9573 -0.9573
MRL/MpJ m 0.0 0.4616 0.9573 -0.9573
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.75 0.4616 1.7073 -0.2073
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.4616 0.9573 -0.9573
NOD/ShiLtJ f 0.5 0.4616 1.4573 -0.4573
NOD/ShiLtJ m 0.75 0.4616 1.7073 -0.2073
NZW/LacJ f 0.0 0.4616 0.9573 -0.9573
NZW/LacJ m 0.0 0.4616 0.9573 -0.9573
SB/LeJ f 1.75 0.4616 2.7073 0.7927
SB/LeJ m 1.5 0.4616 2.4573 0.5427
STOCK a/a Tmem79ma Flgft/J f 2.0 0.4616 2.9573 1.0427
STOCK a/a Tmem79ma Flgft/J m 1.5 0.4616 2.4573 0.5427
WSB/EiJ f 0.0 0.4616 0.9573 -0.9573
WSB/EiJ m 2.0 0.4616 2.9573 1.0427


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.625 0.3264 1.3019 -0.0519
C57BL/6J both 1.375 0.3264 2.0519 0.6981
CAST/EiJ both 0.625 0.3264 1.3019 -0.0519
DBA/1J both 0.875 0.3264 1.5519 0.1981
MRL/MpJ both 0.0 0.3264 0.6769 -0.6769
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.375 0.3264 1.0519 -0.3019
NOD/ShiLtJ both 0.625 0.3264 1.3019 -0.0519
NZW/LacJ both 0.0 0.3264 0.6769 -0.6769
SB/LeJ both 1.625 0.3264 2.3019 0.9481
STOCK a/a Tmem79ma Flgft/J both 1.75 0.3264 2.4269 1.0731
WSB/EiJ both 1.0 0.3264 1.6769 0.3231




  GWAS USING LINEAR MIXED MODELS