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Project measure / variable:   Rice1   Lgals7

ID, description, units MPD:49240   Lgals7   LGALS7, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - LGALS7, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.636   None 1.00   None
Median of the strain means0   None 0   None
SD of the strain means± 0.924 ± 1.61
Coefficient of variation (CV)1.45 1.61
Min–max range of strain means0   –   2.50   None 0   –   4.50   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.4545 1.4545 1.3333 0.2606
strain 10 52.0455 5.2045 4.7708 0.0011
sex:strain 10 17.0455 1.7045 1.5625 0.1836
Residuals 22 24.0 1.0909


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -0.69
C3H/HeJ m 0.0 0.0   2   0.0 0.0 -0.62
C57BL/6J f 0.0 0.0   2   0.0 0.0 -0.69
C57BL/6J m 1.5 2.12   2   1.5 1.41 0.31
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -0.69
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -0.62
DBA/1J f 0.0 0.0   2   0.0 0.0 -0.69
DBA/1J m 0.0 0.0   2   0.0 0.0 -0.62
MRL/MpJ f 0.0 0.0   2   0.0 0.0 -0.69
MRL/MpJ m 0.0 0.0   2   0.0 0.0 -0.62
MRL/MpJ Faslpr-Foxq1sa-J/J f 1.5 2.12   2   1.5 1.41 0.93
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.5 0.707   2   0.5 0.157 4.0, 5.0 2.17
NOD/ShiLtJ f 0.0 0.0   2   0.0 0.0 -0.69
NOD/ShiLtJ m 0.0 0.0   2   0.0 0.0 -0.62
NZW/LacJ f 1.5 2.12   2   1.5 1.41 0.93
NZW/LacJ m 0.0 0.0   2   0.0 0.0 -0.62
SB/LeJ f 1.5 2.12   2   1.5 1.41 0.93
SB/LeJ m 3.5 0.707   2   0.5 0.202 3.0, 4.0 1.55
STOCK a/a Tmem79ma Flgft/J f 2.5 0.707   2   0.5 0.283 2.0, 3.0 2.02
STOCK a/a Tmem79ma Flgft/J m 1.5 2.12   2   1.5 1.41 0.31
WSB/EiJ f 0.0 0.0   2   0.0 0.0 -0.69
WSB/EiJ m 0.0 0.0   2   0.0 0.0 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 0.7385 1.5317 -1.5317
C3H/HeJ m 0.0 0.7385 1.5317 -1.5317
C57BL/6J f 0.0 0.7385 1.5317 -1.5317
C57BL/6J m 1.5 0.7385 3.0317 -0.0317
CAST/EiJ f 0.0 0.7385 1.5317 -1.5317
CAST/EiJ m 0.0 0.7385 1.5317 -1.5317
DBA/1J f 0.0 0.7385 1.5317 -1.5317
DBA/1J m 0.0 0.7385 1.5317 -1.5317
MRL/MpJ f 0.0 0.7385 1.5317 -1.5317
MRL/MpJ m 0.0 0.7385 1.5317 -1.5317
MRL/MpJ Faslpr-Foxq1sa-J/J f 1.5 0.7385 3.0317 -0.0317
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.5 0.7385 6.0317 2.9683
NOD/ShiLtJ f 0.0 0.7385 1.5317 -1.5317
NOD/ShiLtJ m 0.0 0.7385 1.5317 -1.5317
NZW/LacJ f 1.5 0.7385 3.0317 -0.0317
NZW/LacJ m 0.0 0.7385 1.5317 -1.5317
SB/LeJ f 1.5 0.7385 3.0317 -0.0317
SB/LeJ m 3.5 0.7385 5.0317 1.9683
STOCK a/a Tmem79ma Flgft/J f 2.5 0.7385 4.0317 0.9683
STOCK a/a Tmem79ma Flgft/J m 1.5 0.7385 3.0317 -0.0317
WSB/EiJ f 0.0 0.7385 1.5317 -1.5317
WSB/EiJ m 0.0 0.7385 1.5317 -1.5317


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.0 0.5222 1.083 -1.083
C57BL/6J both 0.75 0.5222 1.833 -0.333
CAST/EiJ both 0.0 0.5222 1.083 -1.083
DBA/1J both 0.0 0.5222 1.083 -1.083
MRL/MpJ both 0.0 0.5222 1.083 -1.083
MRL/MpJ Faslpr-Foxq1sa-J/J both 3.0 0.5222 4.083 1.917
NOD/ShiLtJ both 0.0 0.5222 1.083 -1.083
NZW/LacJ both 0.75 0.5222 1.833 -0.333
SB/LeJ both 2.5 0.5222 3.583 1.417
STOCK a/a Tmem79ma Flgft/J both 2.0 0.5222 3.083 0.917
WSB/EiJ both 0.0 0.5222 1.083 -1.083




  GWAS USING LINEAR MIXED MODELS