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Project measure / variable:   Rice1   Krtap4_6

ID, description, units MPD:49229   Krtap4_6   KRTAP4-6, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP4-6, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.91   None 3.59   None
Median of the strain means2.00   None 3.00   None
SD of the strain means± 3.43 ± 3.38
Coefficient of variation (CV)1.18 0.942
Min–max range of strain means0   –   8.55   None 0   –   8.50   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.0518 5.0518 1.8452 0.1881
strain 10 444.3664 44.4366 16.2309 < 0.0001
sex:strain 10 19.2913 1.9291 0.7046 0.7107
Residuals 22 60.2311 2.7378


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -0.85
C3H/HeJ m 2.0 2.83   2   2.0 1.41 -0.47
C57BL/6J f 5.0 1.41   2   1.0 0.283 4.0, 6.0 0.61
C57BL/6J m 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.86
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -0.85
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -1.06
DBA/1J f 2.5 3.54   2   2.5 1.41 -0.12
DBA/1J m 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.86
MRL/MpJ f 0.0 0.0   2   0.0 0.0 -0.85
MRL/MpJ m 0.0 0.0   2   0.0 0.0 -1.06
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -0.85
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.06
NOD/ShiLtJ f 8.55 2.06   2   1.45 0.241 7.09, 10.0 1.64
NOD/ShiLtJ m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 1.16
NZW/LacJ f 8.5 0.707   2   0.5 0.0832 8.0, 9.0 1.63
NZW/LacJ m 8.5 0.707   2   0.5 0.0832 8.0, 9.0 1.45
SB/LeJ f 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.75
SB/LeJ m 5.5 2.12   2   1.5 0.386 4.0, 7.0 0.56
STOCK a/a Tmem79ma Flgft/J f 2.0 2.83   2   2.0 1.41 -0.27
STOCK a/a Tmem79ma Flgft/J m 3.0 4.24   2   3.0 1.41 -0.17
WSB/EiJ f 0.0 0.0   2   0.0 0.0 -0.85
WSB/EiJ m 0.0 0.0   2   0.0 0.0 -1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 1.17 2.4264 -2.4264
C3H/HeJ m 2.0 1.17 4.4264 -0.4264
C57BL/6J f 5.0 1.17 7.4264 2.5736
C57BL/6J m 6.5 1.17 8.9264 4.0736
CAST/EiJ f 0.0 1.17 2.4264 -2.4264
CAST/EiJ m 0.0 1.17 2.4264 -2.4264
DBA/1J f 2.5 1.17 4.9264 0.0736
DBA/1J m 6.5 1.17 8.9264 4.0736
MRL/MpJ f 0.0 1.17 2.4264 -2.4264
MRL/MpJ m 0.0 1.17 2.4264 -2.4264
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 1.17 2.4264 -2.4264
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 1.17 2.4264 -2.4264
NOD/ShiLtJ f 8.5455 1.17 10.9719 6.1191
NOD/ShiLtJ m 7.5 1.17 9.9264 5.0736
NZW/LacJ f 8.5 1.17 10.9264 6.0736
NZW/LacJ m 8.5 1.17 10.9264 6.0736
SB/LeJ f 5.5 1.17 7.9264 3.0736
SB/LeJ m 5.5 1.17 7.9264 3.0736
STOCK a/a Tmem79ma Flgft/J f 2.0 1.17 4.4264 -0.4264
STOCK a/a Tmem79ma Flgft/J m 3.0 1.17 5.4264 0.5736
WSB/EiJ f 0.0 1.17 2.4264 -2.4264
WSB/EiJ m 0.0 1.17 2.4264 -2.4264


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 1.0 0.8273 2.7157 -0.7157
C57BL/6J both 5.75 0.8273 7.4657 4.0343
CAST/EiJ both 0.0 0.8273 1.7157 -1.7157
DBA/1J both 4.5 0.8273 6.2157 2.7843
MRL/MpJ both 0.0 0.8273 1.7157 -1.7157
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 0.8273 1.7157 -1.7157
NOD/ShiLtJ both 8.0228 0.8273 9.7385 6.307
NZW/LacJ both 8.5 0.8273 10.2157 6.7843
SB/LeJ both 5.5 0.8273 7.2157 3.7843
STOCK a/a Tmem79ma Flgft/J both 2.5 0.8273 4.2157 0.7843
WSB/EiJ both 0.0 0.8273 1.7157 -1.7157




  GWAS USING LINEAR MIXED MODELS