Project measure / variable:   Rice1   Krtap3_2

ID, description, units MPD:49228   Krtap3_2   KRTAP3-2, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP3-2, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means10.7   None 10.5   None
Median of the strain means10.5   None 10.0   None
SD of the strain means± 2.94 ± 2.59
Coefficient of variation (CV)0.276 0.246
Min–max range of strain means6.50   –   14.5   None 6.00   –   15.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2045 0.2045 0.0508 0.8237
strain 10 225.1818 22.5182 5.5977 0.0004
sex:strain 10 82.5455 8.2545 2.052 0.0769
Residuals 22 88.5 4.0227


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 13.0 1.41   2   1.0 0.109 12.0, 14.0 0.79
C3H/HeJ m 13.0 0.0   2   0.0 0.0 13.0, 13.0 0.95
C57BL/6J f 7.5 0.707   2   0.5 0.0943 7.0, 8.0 -1.08
C57BL/6J m 10.0 0.0   2   0.0 0.0 10.0, 10.0 -0.21
CAST/EiJ f 6.5 0.707   2   0.5 0.109 6.0, 7.0 -1.42
CAST/EiJ m 7.5 0.707   2   0.5 0.0943 7.0, 8.0 -1.17
DBA/1J f 11.5 0.707   2   0.5 0.0615 11.0, 12.0 0.28
DBA/1J m 12.0 1.41   2   1.0 0.118 11.0, 13.0 0.56
MRL/MpJ f 9.5 2.12   2   1.5 0.223 8.0, 11.0 -0.4
MRL/MpJ m 13.0 1.41   2   1.0 0.109 12.0, 14.0 0.95
MRL/MpJ Faslpr-Foxq1sa-J/J f 14.0 1.41   2   1.0 0.101 13.0, 15.0 1.13
MRL/MpJ Faslpr-Foxq1sa-J/J m 10.5 0.707   2   0.5 0.0673 10.0, 11.0 -0.02
NOD/ShiLtJ f 14.5 2.12   2   1.5 0.146 13.0, 16.0 1.3
NOD/ShiLtJ m 10.0 1.41   2   1.0 0.141 9.0, 11.0 -0.21
NZW/LacJ f 10.5 4.95   2   3.5 0.471 7.0, 14.0 -0.06
NZW/LacJ m 6.0 2.83   2   2.0 0.471 4.0, 8.0 -1.75
SB/LeJ f 14.0 2.83   2   2.0 0.202 12.0, 16.0 1.13
SB/LeJ m 15.0 1.41   2   1.0 0.0943 14.0, 16.0 1.72
STOCK a/a Tmem79ma Flgft/J f 7.0 4.24   2   3.0 0.606 4.0, 10.0 -1.25
STOCK a/a Tmem79ma Flgft/J m 10.0 0.0   2   0.0 0.0 10.0, 10.0 -0.21
WSB/EiJ f 9.5 2.12   2   1.5 0.223 8.0, 11.0 -0.4
WSB/EiJ m 9.0 1.41   2   1.0 0.157 8.0, 10.0 -0.6


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 13.0 1.4182 15.9412 10.0588
C3H/HeJ m 13.0 1.4182 15.9412 10.0588
C57BL/6J f 7.5 1.4182 10.4412 4.5588
C57BL/6J m 10.0 1.4182 12.9412 7.0588
CAST/EiJ f 6.5 1.4182 9.4412 3.5588
CAST/EiJ m 7.5 1.4182 10.4412 4.5588
DBA/1J f 11.5 1.4182 14.4412 8.5588
DBA/1J m 12.0 1.4182 14.9412 9.0588
MRL/MpJ f 9.5 1.4182 12.4412 6.5588
MRL/MpJ m 13.0 1.4182 15.9412 10.0588
MRL/MpJ Faslpr-Foxq1sa-J/J f 14.0 1.4182 16.9412 11.0588
MRL/MpJ Faslpr-Foxq1sa-J/J m 10.5 1.4182 13.4412 7.5588
NOD/ShiLtJ f 14.5 1.4182 17.4412 11.5588
NOD/ShiLtJ m 10.0 1.4182 12.9412 7.0588
NZW/LacJ f 10.5 1.4182 13.4412 7.5588
NZW/LacJ m 6.0 1.4182 8.9412 3.0588
SB/LeJ f 14.0 1.4182 16.9412 11.0588
SB/LeJ m 15.0 1.4182 17.9412 12.0588
STOCK a/a Tmem79ma Flgft/J f 7.0 1.4182 9.9412 4.0588
STOCK a/a Tmem79ma Flgft/J m 10.0 1.4182 12.9412 7.0588
WSB/EiJ f 9.5 1.4182 12.4412 6.5588
WSB/EiJ m 9.0 1.4182 11.9412 6.0588


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 13.0 1.0028 15.0798 10.9202
C57BL/6J both 8.75 1.0028 10.8298 6.6702
CAST/EiJ both 7.0 1.0028 9.0798 4.9202
DBA/1J both 11.75 1.0028 13.8298 9.6702
MRL/MpJ both 11.25 1.0028 13.3298 9.1702
MRL/MpJ Faslpr-Foxq1sa-J/J both 12.25 1.0028 14.3298 10.1702
NOD/ShiLtJ both 12.25 1.0028 14.3298 10.1702
NZW/LacJ both 8.25 1.0028 10.3298 6.1702
SB/LeJ both 14.5 1.0028 16.5798 12.4202
STOCK a/a Tmem79ma Flgft/J both 8.5 1.0028 10.5798 6.4202
WSB/EiJ both 9.25 1.0028 11.3298 7.1702




  GWAS USING LINEAR MIXED MODELS