Project measure / variable:   Rice1   Krt84

ID, description, units MPD:49227   Krt84   KRT84, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRT84, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means25.2   None 23.7   None
Median of the strain means28.5   None 28.2   None
SD of the strain means± 13.5 ± 13.2
Coefficient of variation (CV)0.535 0.557
Min–max range of strain means0   –   39.1   None 0   –   37.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 24.8912 24.8912 2.7164 0.1135
strain 10 6964.773 696.4773 76.0065 < 0.0001
sex:strain 10 141.2574 14.1257 1.5415 0.1905
Residuals 22 201.5947 9.1634


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 23.4 1.42   2   1.0 0.0606 22.4, 24.4 -0.13
C3H/HeJ m 23.2 0.226   2   0.159 0.00974 23.0, 23.3 -0.04
C57BL/6J f 39.1 7.15   2   5.05 0.183 34.0, 44.1 1.03
C57BL/6J m 36.5 0.707   2   0.5 0.0194 36.0, 37.0 0.97
CAST/EiJ f 27.5 5.0   2   3.54 0.182 24.0, 31.1 0.17
CAST/EiJ m 31.0 4.19   2   2.97 0.135 28.1, 34.0 0.56
DBA/1J f 28.5 4.95   2   3.5 0.174 25.0, 32.0 0.25
DBA/1J m 26.0 5.66   2   4.0 0.218 22.0, 30.0 0.18
MRL/MpJ f 30.3 3.81   2   2.69 0.126 27.6, 33.0 0.38
MRL/MpJ m 31.0 1.41   2   1.0 0.0456 30.0, 32.0 0.56
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -1.87
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.8
NOD/ShiLtJ f 36.0 0.0   2   0.0 0.0 36.0, 36.0 0.8
NOD/ShiLtJ m 28.2 3.96   2   2.8 0.14 25.4, 31.0 0.34
NZW/LacJ f 35.5 2.12   2   1.5 0.0598 34.0, 37.0 0.77
NZW/LacJ m 31.5 0.707   2   0.5 0.0224 31.0, 32.0 0.59
SB/LeJ f 0.0 0.0   2   0.0 0.0 -1.87
SB/LeJ m 0.0 0.0   2   0.0 0.0 -1.8
STOCK a/a Tmem79ma Flgft/J f 22.7 0.807   2   0.57 0.0356 22.1, 23.3 -0.18
STOCK a/a Tmem79ma Flgft/J m 15.5 2.12   2   1.5 0.137 14.0, 17.0 -0.62
WSB/EiJ f 34.0 1.41   2   1.0 0.0416 33.0, 35.0 0.65
WSB/EiJ m 37.5 2.12   2   1.5 0.0566 36.0, 39.0 1.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 23.3625 2.1405 27.8016 18.9234
C3H/HeJ m 23.1595 2.1405 27.5986 18.7204
C57BL/6J f 39.0545 2.1405 43.4936 34.6154
C57BL/6J m 36.5 2.1405 40.9391 32.0609
CAST/EiJ f 27.538 2.1405 31.9771 23.0989
CAST/EiJ m 31.0345 2.1405 35.4736 26.5954
DBA/1J f 28.5 2.1405 32.9391 24.0609
DBA/1J m 26.0 2.1405 30.4391 21.5609
MRL/MpJ f 30.307 2.1405 34.7461 25.8679
MRL/MpJ m 31.0 2.1405 35.4391 26.5609
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 2.1405 4.4391 -4.4391
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 2.1405 4.4391 -4.4391
NOD/ShiLtJ f 36.0 2.1405 40.4391 31.5609
NOD/ShiLtJ m 28.2015 2.1405 32.6406 23.7624
NZW/LacJ f 35.5 2.1405 39.9391 31.0609
NZW/LacJ m 31.5 2.1405 35.9391 27.0609
SB/LeJ f 0.0 2.1405 4.4391 -4.4391
SB/LeJ m 0.0 2.1405 4.4391 -4.4391
STOCK a/a Tmem79ma Flgft/J f 22.6805 2.1405 27.1196 18.2414
STOCK a/a Tmem79ma Flgft/J m 15.5 2.1405 19.9391 11.0609
WSB/EiJ f 34.0 2.1405 38.4391 29.5609
WSB/EiJ m 37.5 2.1405 41.9391 33.0609


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 23.261 1.5136 26.3999 20.1221
C57BL/6J both 37.7772 1.5136 40.9162 34.6383
CAST/EiJ both 29.2862 1.5136 32.4252 26.1473
DBA/1J both 27.25 1.5136 30.3889 24.1111
MRL/MpJ both 30.6535 1.5136 33.7924 27.5146
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 1.5136 3.1389 -3.1389
NOD/ShiLtJ both 32.1007 1.5136 35.2397 28.9618
NZW/LacJ both 33.5 1.5136 36.6389 30.3611
SB/LeJ both 0.0 1.5136 3.1389 -3.1389
STOCK a/a Tmem79ma Flgft/J both 19.0902 1.5136 22.2292 15.9513
WSB/EiJ both 35.75 1.5136 38.8889 32.6111




  GWAS USING LINEAR MIXED MODELS