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Project measure / variable:   Rice1   Krt83

ID, description, units MPD:49226   Krt83   KRT83, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRT83, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means109   None 135   None
Median of the strain means88.5   None 125   None
SD of the strain means± 72.2 ± 73.8
Coefficient of variation (CV)0.660 0.549
Min–max range of strain means58.1   –   310   None 58.6   –   306   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7034.6158 7034.6158 3.6391 0.0696
strain 10 185984.3525 18598.4353 9.6213 < 0.0001
sex:strain 10 27212.0666 2721.2067 1.4077 0.2408
Residuals 22 42527.0368 1933.0471


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 310.0 47.6   2   33.7 0.154 276.0, 343.0 2.78
C3H/HeJ m 306.0 16.7   2   11.8 0.0543 295.0, 318.0 2.32
C57BL/6J f 58.1 9.7   2   6.86 0.167 51.2, 64.9 -0.71
C57BL/6J m 64.4 7.94   2   5.62 0.123 58.8, 70.0 -0.95
CAST/EiJ f 104.0 56.4   2   39.9 0.54 64.6, 144.0 -0.07
CAST/EiJ m 125.0 26.7   2   18.8 0.213 106.0, 144.0 -0.13
DBA/1J f 70.9 15.5   2   11.0 0.219 60.0, 81.9 -0.53
DBA/1J m 193.0 4.05   2   2.86 0.0209 191.0, 196.0 0.79
MRL/MpJ f 65.6 4.13   2   2.92 0.0629 62.7, 68.5 -0.61
MRL/MpJ m 95.2 43.1   2   30.5 0.452 64.7, 126.0 -0.53
MRL/MpJ Faslpr-Foxq1sa-J/J f 117.0 77.2   2   54.6 0.66 62.3, 172.0 0.11
MRL/MpJ Faslpr-Foxq1sa-J/J m 113.0 77.9   2   55.1 0.687 58.4, 169.0 -0.29
NOD/ShiLtJ f 64.4 1.42   2   1.01 0.0221 63.4, 65.4 -0.62
NOD/ShiLtJ m 129.0 71.0   2   50.2 0.55 78.9, 179.0 -0.08
NZW/LacJ f 88.5 36.4   2   25.7 0.411 62.8, 114.0 -0.29
NZW/LacJ m 196.0 1.52   2   1.07 0.00776 195.0, 197.0 0.83
SB/LeJ f 70.6 4.5   2   3.18 0.0638 67.4, 73.7 -0.54
SB/LeJ m 63.0 3.76   2   2.66 0.0596 60.3, 65.7 -0.97
STOCK a/a Tmem79ma Flgft/J f 151.0 32.0   2   22.6 0.212 128.0, 173.0 0.58
STOCK a/a Tmem79ma Flgft/J m 137.0 93.5   2   66.1 0.684 70.6, 203.0 0.03
WSB/EiJ f 103.0 74.4   2   52.6 0.723 50.3, 155.0 -0.09
WSB/EiJ m 58.6 8.14   2   5.75 0.139 52.8, 64.4 -1.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 309.567 31.089 374.0416 245.0924
C3H/HeJ m 306.4645 31.089 370.9391 241.9899
C57BL/6J f 58.081 31.089 122.5556 0.0
C57BL/6J m 64.4145 31.089 128.8891 0.0
CAST/EiJ f 104.4355 31.089 168.9101 39.9609
CAST/EiJ m 124.8445 31.089 189.3191 60.3699
DBA/1J f 70.948 31.089 135.4226 6.4734
DBA/1J m 193.4585 31.089 257.9331 128.9839
MRL/MpJ f 65.5885 31.089 130.0631 1.1139
MRL/MpJ m 95.211 31.089 159.6856 30.7364
MRL/MpJ Faslpr-Foxq1sa-J/J f 116.9435 31.089 181.4181 52.4689
MRL/MpJ Faslpr-Foxq1sa-J/J m 113.441 31.089 177.9156 48.9664
NOD/ShiLtJ f 64.3975 31.089 128.8721 0.0
NOD/ShiLtJ m 129.1195 31.089 193.5941 64.6449
NZW/LacJ f 88.52 31.089 152.9946 24.0454
NZW/LacJ m 195.657 31.089 260.1316 131.1824
SB/LeJ f 70.5585 31.089 135.0331 6.0839
SB/LeJ m 62.994 31.089 127.4686 0.0
STOCK a/a Tmem79ma Flgft/J f 150.843 31.089 215.3176 86.3684
STOCK a/a Tmem79ma Flgft/J m 136.6905 31.089 201.1651 72.2159
WSB/EiJ f 102.839 31.089 167.3136 38.3644
WSB/EiJ m 58.6005 31.089 123.0751 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 308.0158 21.9832 353.6061 262.4254
C57BL/6J both 61.2478 21.9832 106.8381 15.6574
CAST/EiJ both 114.64 21.9832 160.2304 69.0496
DBA/1J both 132.2033 21.9832 177.7936 86.6129
MRL/MpJ both 80.3997 21.9832 125.9901 34.8094
MRL/MpJ Faslpr-Foxq1sa-J/J both 115.1922 21.9832 160.7826 69.6019
NOD/ShiLtJ both 96.7585 21.9832 142.3489 51.1681
NZW/LacJ both 142.0885 21.9832 187.6789 96.4981
SB/LeJ both 66.7762 21.9832 112.3666 21.1859
STOCK a/a Tmem79ma Flgft/J both 143.7668 21.9832 189.3571 98.1764
WSB/EiJ both 80.7198 21.9832 126.3101 35.1294




  GWAS USING LINEAR MIXED MODELS