Project measure / variable:   Rice1   Krt82

ID, description, units MPD:49225   Krt82   KRT82, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRT82, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means12.0   None 11.6   None
Median of the strain means13.0   None 11.6   None
SD of the strain means± 4.17 ± 4.90
Coefficient of variation (CV)0.347 0.421
Min–max range of strain means5.03   –   18.6   None 4.50   –   19.9   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.3162 1.3162 0.3236 0.5752
strain 10 797.4608 79.7461 19.6075 < 0.0001
sex:strain 10 31.4708 3.1471 0.7738 0.6524
Residuals 22 89.4768 4.0671


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 8.0 0.0   2   0.0 0.0 8.0, 8.0 -0.96
C3H/HeJ m 6.5 0.707   2   0.5 0.109 6.0, 7.0 -1.05
C57BL/6J f 9.03 1.38   2   0.973 0.152 8.05, 10.0 -0.71
C57BL/6J m 7.04 2.77   2   1.96 0.393 5.08, 9.0 -0.94
CAST/EiJ f 18.6 0.585   2   0.414 0.0315 18.2, 19.0 1.59
CAST/EiJ m 19.9 2.91   2   2.06 0.146 17.9, 22.0 1.68
DBA/1J f 15.6 0.714   2   0.505 0.0458 15.1, 16.1 0.87
DBA/1J m 11.6 0.728   2   0.515 0.0627 11.1, 12.1 -0.01
MRL/MpJ f 13.1 1.36   2   0.965 0.104 12.1, 14.1 0.27
MRL/MpJ m 13.9 6.92   2   4.89 0.498 9.0, 18.8 0.46
MRL/MpJ Faslpr-Foxq1sa-J/J f 9.57 0.615   2   0.435 0.0643 9.13, 10.0 -0.58
MRL/MpJ Faslpr-Foxq1sa-J/J m 9.5 2.12   2   1.5 0.223 8.0, 11.0 -0.44
NOD/ShiLtJ f 14.5 2.12   2   1.5 0.146 13.0, 16.0 0.6
NOD/ShiLtJ m 15.0 0.0   2   0.0 0.0 15.0, 15.0 0.69
NZW/LacJ f 13.0 0.0   2   0.0 0.0 13.0, 13.0 0.24
NZW/LacJ m 15.6 0.832   2   0.589 0.0534 15.0, 16.2 0.81
SB/LeJ f 9.0 0.0   2   0.0 0.0 9.0, 9.0 -0.72
SB/LeJ m 8.0 0.0   2   0.0 0.0 8.0, 8.0 -0.74
STOCK a/a Tmem79ma Flgft/J f 5.03 2.87   2   2.03 0.571 3.0, 7.06 -1.67
STOCK a/a Tmem79ma Flgft/J m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -1.46
WSB/EiJ f 16.5 0.707   2   0.5 0.0429 16.0, 17.0 1.08
WSB/EiJ m 16.5 0.68   2   0.48 0.0411 16.0, 17.0 0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 8.0 1.426 10.9574 5.0426
C3H/HeJ m 6.5 1.426 9.4574 3.5426
C57BL/6J f 9.027 1.426 11.9844 6.0696
C57BL/6J m 7.0425 1.426 9.9999 4.0851
CAST/EiJ f 18.586 1.426 21.5434 15.6286
CAST/EiJ m 19.941 1.426 22.8984 16.9836
DBA/1J f 15.607 1.426 18.5644 12.6496
DBA/1J m 11.621 1.426 14.5784 8.6636
MRL/MpJ f 13.096 1.426 16.0534 10.1386
MRL/MpJ m 13.8945 1.426 16.8519 10.9371
MRL/MpJ Faslpr-Foxq1sa-J/J f 9.565 1.426 12.5224 6.6076
MRL/MpJ Faslpr-Foxq1sa-J/J m 9.5 1.426 12.4574 6.5426
NOD/ShiLtJ f 14.5 1.426 17.4574 11.5426
NOD/ShiLtJ m 15.0 1.426 17.9574 12.0426
NZW/LacJ f 13.0 1.426 15.9574 10.0426
NZW/LacJ m 15.5885 1.426 18.5459 12.6311
SB/LeJ f 9.0 1.426 11.9574 6.0426
SB/LeJ m 8.0 1.426 10.9574 5.0426
STOCK a/a Tmem79ma Flgft/J f 5.031 1.426 7.9884 2.0736
STOCK a/a Tmem79ma Flgft/J m 4.5 1.426 7.4574 1.5426
WSB/EiJ f 16.5 1.426 19.4574 13.5426
WSB/EiJ m 16.5195 1.426 19.4769 13.5621


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 7.25 1.0084 9.3412 5.1588
C57BL/6J both 8.0348 1.0084 10.126 5.9435
CAST/EiJ both 19.2635 1.0084 21.3547 17.1723
DBA/1J both 13.614 1.0084 15.7052 11.5228
MRL/MpJ both 13.4953 1.0084 15.5865 11.404
MRL/MpJ Faslpr-Foxq1sa-J/J both 9.5325 1.0084 11.6237 7.4413
NOD/ShiLtJ both 14.75 1.0084 16.8412 12.6588
NZW/LacJ both 14.2942 1.0084 16.3855 12.203
SB/LeJ both 8.5 1.0084 10.5912 6.4088
STOCK a/a Tmem79ma Flgft/J both 4.7655 1.0084 6.8567 2.6743
WSB/EiJ both 16.5098 1.0084 18.601 14.4185




  GWAS USING LINEAR MIXED MODELS