Project measure / variable:   Rice1   Hist1h4a

ID, description, units MPD:49218   Hist1h4a   HIST1H4A, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - HIST1H4A, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means10.4   None 10.2   None
Median of the strain means10.5   None 11.0   None
SD of the strain means± 2.78 ± 3.29
Coefficient of variation (CV)0.269 0.322
Min–max range of strain means6.50   –   14.5   None 5.00   –   14.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2045 0.2045 0.0756 0.7859
strain 10 293.9091 29.3909 10.8672 < 0.0001
sex:strain 10 77.5455 7.7545 2.8672 0.0189
Residuals 22 59.5 2.7045


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 6.5 0.707   2   0.5 0.109 6.0, 7.0 -1.39
C3H/HeJ m 8.5 0.707   2   0.5 0.0832 8.0, 9.0 -0.53
C57BL/6J f 14.5 0.707   2   0.5 0.0488 14.0, 15.0 1.49
C57BL/6J m 13.5 0.707   2   0.5 0.0524 13.0, 14.0 1.0
CAST/EiJ f 9.5 2.12   2   1.5 0.223 8.0, 11.0 -0.31
CAST/EiJ m 14.5 2.12   2   1.5 0.146 13.0, 16.0 1.3
DBA/1J f 10.5 0.707   2   0.5 0.0673 10.0, 11.0 0.05
DBA/1J m 11.0 1.41   2   1.0 0.129 10.0, 12.0 0.23
MRL/MpJ f 9.5 0.707   2   0.5 0.0744 9.0, 10.0 -0.31
MRL/MpJ m 13.0 2.83   2   2.0 0.218 11.0, 15.0 0.84
MRL/MpJ Faslpr-Foxq1sa-J/J f 7.0 1.41   2   1.0 0.202 6.0, 8.0 -1.21
MRL/MpJ Faslpr-Foxq1sa-J/J m 5.0 2.83   2   2.0 0.566 3.0, 7.0 -1.59
NOD/ShiLtJ f 12.5 0.707   2   0.5 0.0566 12.0, 13.0 0.77
NOD/ShiLtJ m 11.5 0.707   2   0.5 0.0615 11.0, 12.0 0.39
NZW/LacJ f 10.5 0.707   2   0.5 0.0673 10.0, 11.0 0.05
NZW/LacJ m 7.5 2.12   2   1.5 0.283 6.0, 9.0 -0.83
SB/LeJ f 7.0 2.83   2   2.0 0.404 5.0, 9.0 -1.21
SB/LeJ m 6.0 1.41   2   1.0 0.236 5.0, 7.0 -1.29
STOCK a/a Tmem79ma Flgft/J f 13.0 1.41   2   1.0 0.109 12.0, 14.0 0.95
STOCK a/a Tmem79ma Flgft/J m 8.5 2.12   2   1.5 0.25 7.0, 10.0 -0.53
WSB/EiJ f 13.5 2.12   2   1.5 0.157 12.0, 15.0 1.13
WSB/EiJ m 13.5 0.707   2   0.5 0.0524 13.0, 14.0 1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 6.5 1.1629 8.9117 4.0883
C3H/HeJ m 8.5 1.1629 10.9117 6.0883
C57BL/6J f 14.5 1.1629 16.9117 12.0883
C57BL/6J m 13.5 1.1629 15.9117 11.0883
CAST/EiJ f 9.5 1.1629 11.9117 7.0883
CAST/EiJ m 14.5 1.1629 16.9117 12.0883
DBA/1J f 10.5 1.1629 12.9117 8.0883
DBA/1J m 11.0 1.1629 13.4117 8.5883
MRL/MpJ f 9.5 1.1629 11.9117 7.0883
MRL/MpJ m 13.0 1.1629 15.4117 10.5883
MRL/MpJ Faslpr-Foxq1sa-J/J f 7.0 1.1629 9.4117 4.5883
MRL/MpJ Faslpr-Foxq1sa-J/J m 5.0 1.1629 7.4117 2.5883
NOD/ShiLtJ f 12.5 1.1629 14.9117 10.0883
NOD/ShiLtJ m 11.5 1.1629 13.9117 9.0883
NZW/LacJ f 10.5 1.1629 12.9117 8.0883
NZW/LacJ m 7.5 1.1629 9.9117 5.0883
SB/LeJ f 7.0 1.1629 9.4117 4.5883
SB/LeJ m 6.0 1.1629 8.4117 3.5883
STOCK a/a Tmem79ma Flgft/J f 13.0 1.1629 15.4117 10.5883
STOCK a/a Tmem79ma Flgft/J m 8.5 1.1629 10.9117 6.0883
WSB/EiJ f 13.5 1.1629 15.9117 11.0883
WSB/EiJ m 13.5 1.1629 15.9117 11.0883


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 7.5 0.8223 9.2053 5.7947
C57BL/6J both 14.0 0.8223 15.7053 12.2947
CAST/EiJ both 12.0 0.8223 13.7053 10.2947
DBA/1J both 10.75 0.8223 12.4553 9.0447
MRL/MpJ both 11.25 0.8223 12.9553 9.5447
MRL/MpJ Faslpr-Foxq1sa-J/J both 6.0 0.8223 7.7053 4.2947
NOD/ShiLtJ both 12.0 0.8223 13.7053 10.2947
NZW/LacJ both 9.0 0.8223 10.7053 7.2947
SB/LeJ both 6.5 0.8223 8.2053 4.7947
STOCK a/a Tmem79ma Flgft/J both 10.75 0.8223 12.4553 9.0447
WSB/EiJ both 13.5 0.8223 15.2053 11.7947




  GWAS USING LINEAR MIXED MODELS