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Project measure / variable:   Boon1   survival_hi

ID, description, units MPD:46923   survival_hi   survival (days to death, max 30)   [d]  dose group: high  
influenza A (H5N1) virus study
Data set, strains Boon1   inbred   21 strains     sex: f     age: 6-9wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Boon1 - survival (days to death, max 30) dose group: high



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested21 strains
Mean of the strain means13.8   d
Median of the strain means12.6   d
SD of the strain means± 6.33
Coefficient of variation (CV)0.458
Min–max range of strain means7.00   –   26.5   d
Mean sample size per strain14.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 11360.3197 568.016 7.658 < 0.0001
Residuals 358 26553.9864 74.1731


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.1 1.37   10 0.433 0.169 6.0, 11.0 -0.9
129X1/SvJ f 8.0 0.707   5 0.316 0.0884 7.0, 9.0 -0.92
A/HeJ f 12.5 6.36   10 2.01 0.509 9.0, 30.0 -0.21
A/J f 7.7 1.42   10 0.448 0.184 5.0, 9.0 -0.97
AKR/J f 24.1 10.2   15 2.63 0.424 7.0, 30.0 1.63
B10.D2-Hc0 f 10.9 5.59   30 1.02 0.514 7.0, 30.0 -0.46
B10.D2-Hc1 f 12.6 8.0   19 1.83 0.636 7.0, 30.0 -0.19
B6D2F1/J f 14.5 7.1   20 1.59 0.49 8.0, 30.0 0.11
BALB/cByJ f 22.7 10.6   24 2.17 0.468 6.0, 30.0 1.4
BALB/cJ f 26.5 8.27   19 1.9 0.312 6.0, 30.0 2.0
BTBR T+ Itpr3tf/J f 7.0 0.0   3 0.0 0.0 7.0, 7.0 -1.08
C3H/HeJ f 7.67 1.4   15 0.361 0.182 6.0, 10.0 -0.97
C57BL/6J f 18.0 10.2   104 1.0 0.565 5.0, 30.0 0.66
DBA/2J f 7.47 6.32   15 1.63 0.847 4.0, 30.0 -1.0
FVB/NJ f 13.9 8.66   15 2.24 0.622 6.0, 30.0 0.01
KK/HlJ f 8.75 0.957   4 0.479 0.109 8.0, 10.0 -0.8
LP/J f 7.75 0.5   4 0.25 0.0645 7.0, 8.0 -0.96
MRL/MpJ f 14.9 10.5   10 3.31 0.702 7.0, 30.0 0.17
NOD/ShiLtJ f 24.5 9.98   12 2.88 0.407 7.0, 30.0 1.69
NZW/LacJ f 14.2 6.7   15 1.73 0.472 8.0, 30.0 0.06
SM/J f 18.3 12.1   20 2.7 0.66 5.0, 30.0 0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.1 2.7235 13.456 2.744
129X1/SvJ f 8.0 3.8516 15.5746 0.4254
A/HeJ f 12.5 2.7235 17.856 7.144
A/J f 7.7 2.7235 13.056 2.344
AKR/J f 24.0667 2.2237 28.4398 19.6935
B10.D2-Hc0 f 10.8667 1.5724 13.959 7.7744
B10.D2-Hc1 f 12.5789 1.9758 16.4646 8.6933
B6D2F1/J f 14.5 1.9258 18.2873 10.7127
BALB/cByJ f 22.7083 1.758 26.1656 19.251
BALB/cJ f 26.5263 1.9758 30.412 22.6407
BTBR T+ Itpr3tf/J f 7.0 4.9724 16.7787 0.0
C3H/HeJ f 7.6667 2.2237 12.0398 3.2935
C57BL/6J f 18.0481 0.8445 19.7089 16.3872
DBA/2J f 7.4667 2.2237 11.8398 3.0935
FVB/NJ f 13.9333 2.2237 18.3065 9.5602
KK/HlJ f 8.75 4.3062 17.2186 0.2814
LP/J f 7.75 4.3062 16.2186 0.0
MRL/MpJ f 14.9 2.7235 20.256 9.544
NOD/ShiLtJ f 24.5 2.4862 29.3894 19.6106
NZW/LacJ f 14.2 2.2237 18.5732 9.8268
SM/J f 18.3 1.9258 22.0873 14.5127




  GWAS USING LINEAR MIXED MODELS