Project measure / variable:   HMDPpheno4   cue_imob

ID, description, units MPD:46872   cue_imob   cued fear, percent time immobile, day 3   [%]  cue  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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HMDPpheno4 - cued fear, percent time immobile, day 3 cue



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means30.5   %
Median of the strain means31.4   %
SD of the strain means± 13.7
Coefficient of variation (CV)0.451
Min–max range of strain means4.35   –   70.0   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 115643.4013 1243.4774 4.2603 < 0.0001
Residuals 593 173080.5348 291.8727


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 22.4 17.0   4 8.49 0.757 6.25, 37.2 -0.59
A/J m 11.5 6.69   5 2.99 0.581 3.39, 19.5 -1.38
AKR/J m 10.2 3.69   8 1.3 0.363 5.32, 16.4 -1.48
AXB10/PgnJ m 38.0 17.2   3 9.95 0.453 26.8, 57.8 0.55
AXB12/PgnJ m 9.81 9.34   8 3.3 0.953 1.74, 31.2 -1.5
AXB13/PgnJ m 8.9 5.23   8 1.85 0.588 2.91, 20.7 -1.57
AXB15/PgnJ m 50.5 24.1   7 9.1 0.476 22.8, 87.8 1.46
AXB19a/PgnJ m 64.0 18.6   4 9.31 0.291 43.2, 88.5 2.44
AXB19/PgnJ m 53.3 21.3   15 5.49 0.399 24.1, 82.7 1.66
AXB1/PgnJ m 38.8 9.7   8 3.43 0.25 23.1, 55.0 0.61
AXB23/PgnJ m 43.9 12.3   4 6.13 0.279 33.3, 55.2 0.98
AXB24/PgnJ m 30.0 21.5   6 8.78 0.717 6.74, 58.0 -0.03
AXB2/PgnJ m 16.3 13.2   8 4.68 0.814 2.65, 38.3 -1.03
AXB4/PgnJ m 58.6 17.0   4 8.5 0.29 43.0, 79.8 2.05
AXB5/PgnJ m 47.5 23.0   8 8.15 0.485 12.5, 82.0 1.24
AXB6/PgnJ m 24.4 18.1   9 6.04 0.743 4.73, 62.2 -0.44
AXB8/PgnJ m 45.1 12.7   7 4.8 0.282 31.6, 62.9 1.07
B6cC3-1/KccJ m 24.3 26.3   7 9.94 1.08 1.43, 74.9 -0.45
BALB/cJ m 14.9 12.5   12 3.6 0.839 2.09, 34.8 -1.13
BTBR T+ Itpr3tf/J m 32.9 11.5   8 4.06 0.349 22.0, 53.7 0.18
BUB/BnJ m 24.0 28.8   3 16.6 1.2 4.76, 57.1 -0.47
BXA12/PgnJ m 34.1 14.6   7 5.5 0.426 10.7, 59.3 0.26
BXA13/PgnJ m 16.8 22.3   10 7.05 1.33 1.71, 74.2 -1.0
BXA14/PgnJ m 22.5 26.9   10 8.5 1.2 1.71, 74.2 -0.58
BXA16/PgnJ m 22.8 17.3   7 6.55 0.762 5.5, 51.3 -0.56
BXA1/PgnJ m 37.9 21.5   3 12.4 0.567 13.5, 53.8 0.54
BXA24/PgnJ m 48.0 34.9   6 14.2 0.726 2.85, 76.4 1.28
BXA25/PgnJ m 46.3 32.7   8 11.6 0.705 5.84, 79.6 1.15
BXA26/PgnJ m 9.83 4.39   8 1.55 0.447 2.72, 16.5 -1.5
BXA2/PgnJ m 36.2 18.9   8 6.69 0.522 4.49, 61.0 0.42
BXA4/PgnJ m 31.3 9.18   8 3.24 0.293 18.1, 41.8 0.06
BXA7/PgnJ m 24.7 23.4   8 8.27 0.948 4.95, 67.5 -0.42
BXA8/PgnJ m 37.0 19.6   8 6.93 0.53 4.73, 63.4 0.48
BXD11/TyJ m 53.1 22.2   5 9.91 0.417 27.0, 83.3 1.65
BXD12/TyJ m 46.6 30.6   8 10.8 0.656 10.9, 84.5 1.17
BXD13/TyJ m 19.6 12.7   4 6.36 0.65 10.7, 38.4 -0.79
BXD14/TyJ m 44.3 16.4   8 5.79 0.37 16.9, 60.5 1.01
BXD15/TyJ m 32.2 14.5   6 5.94 0.452 10.6, 53.5 0.13
BXD16/TyJ m 36.9 23.1   6 9.45 0.628 10.7, 73.5 0.47
BXD18/TyJ m 28.6 13.9   7 5.25 0.486 1.58, 47.8 -0.14
BXD19/TyJ m 35.7 16.0   7 6.06 0.449 20.9, 66.3 0.38
BXD1/TyJ m 48.2 19.5   7 7.36 0.404 10.7, 70.5 1.29
BXD20/TyJ m 22.9 12.0   8 4.24 0.523 3.12, 39.3 -0.55
BXD21/TyJ m 37.2 11.0   6 4.48 0.296 26.8, 57.8 0.49
BXD24/TyJ m 45.4 14.6   4 7.29 0.321 33.1, 66.3 1.09
BXD27/TyJ m 31.6 21.5   8 7.59 0.68 6.21, 61.2 0.08
BXD28/TyJ m 70.0 9.53   4 4.77 0.136 59.2, 82.4 2.88
BXD29-Tlr4lps-2J/J m 38.6 13.2   7 5.0 0.343 25.3, 63.2 0.59
BXD2/TyJ m 28.7 9.27   4 4.63 0.323 21.2, 41.8 -0.13
BXD31/TyJ m 14.8 10.2   4 5.12 0.692 6.21, 29.6 -1.14
BXD32/TyJ m 19.1 9.03   5 4.04 0.474 9.67, 31.9 -0.83
BXD33/TyJ m 50.7 15.9   3 9.16 0.313 33.6, 65.0 1.47
BXD34/TyJ m 33.7 25.9   8 9.15 0.768 9.67, 81.0 0.24
BXD36/TyJ m 25.8 12.8   8 4.54 0.498 1.86, 39.5 -0.34
BXD38/TyJ m 41.7 13.5   8 4.76 0.323 22.9, 64.7 0.82
BXD39/TyJ m 40.1 32.4   9 10.8 0.809 6.3, 87.2 0.7
BXD40/TyJ m 20.3 18.4   8 6.5 0.906 2.27, 60.9 -0.74
BXD42/TyJ m 19.1 11.5   9 3.83 0.6 2.05, 38.7 -0.83
BXD5/TyJ m 28.7 12.2   7 4.61 0.425 13.0, 41.0 -0.13
BXD6/TyJ m 29.0 20.1   7 7.58 0.692 13.6, 73.4 -0.11
BXD8/TyJ m 32.2 17.2   8 6.09 0.536 14.8, 60.1 0.13
BXD9/TyJ m 44.2 18.5   8 6.54 0.419 24.8, 69.8 1.0
BXH10/TyJ m 28.3 12.3   10 3.89 0.435 16.5, 55.0 -0.16
BXH14/TyJ m 36.0 17.3   9 5.78 0.482 16.5, 63.6 0.4
BXH19/TyJ m 47.3 15.2   14 4.06 0.321 15.6, 78.0 1.23
BXH20/KccJ m 4.35 1.98   6 0.807 0.455 1.95, 7.7 -1.9
BXH22/KccJ m 19.0 11.4   9 3.8 0.598 3.57, 34.1 -0.84
BXH2/TyJ m 34.5 14.3   15 3.69 0.415 12.9, 60.8 0.29
BXH4/TyJ m 23.0 12.1   7 4.59 0.527 11.1, 42.7 -0.54
BXH6/TyJ m 20.7 17.6   8 6.22 0.849 3.64, 48.6 -0.71
BXH7/TyJ m 40.7 5.42   3 3.13 0.133 35.0, 45.8 0.75
BXH8/TyJ m 39.4 7.77   6 3.17 0.197 32.0, 52.8 0.65
BXH9/TyJ m 21.0 23.9   5 10.7 1.14 2.38, 58.9 -0.69
C3H/HeJ m 38.4 6.94   8 2.46 0.181 32.2, 53.9 0.58
C57BL/6J m 38.0 7.07   12 2.04 0.186 21.2, 44.3 0.55
C57L/J m 15.9 14.2   8 5.01 0.893 4.19, 43.9 -1.06
C58/J m 17.5 9.33   8 3.3 0.534 8.54, 32.5 -0.94
CAST/EiJ m 26.7 17.1   3 9.86 0.64 12.5, 45.6 -0.27
CBA/J m 33.5 11.1   11 3.35 0.331 21.9, 55.1 0.22
CE/J m 31.3 19.3   4 9.66 0.617 3.78, 48.9 0.06
DBA/2J m 31.4 9.45   12 2.73 0.301 17.0, 50.3 0.07
FVB/NJ m 14.5 14.0   12 4.04 0.964 3.98, 45.0 -1.16
KK/HlJ m 24.6 28.1   7 10.6 1.14 3.97, 73.5 -0.43
LG/J m 8.43 4.34   3 2.5 0.515 4.73, 13.2 -1.6
LP/J m 34.7 22.7   11 6.85 0.655 3.79, 68.1 0.31
MA/MyJ m 13.7 10.5   4 5.27 0.77 5.28, 27.8 -1.22
NOD/ShiLtJ m 12.8 16.1   8 5.7 1.26 2.8, 49.9 -1.29
NON/ShiLtJ m 12.9 8.07   7 3.05 0.624 1.96, 24.0 -1.28
NZB/BlNJ m 36.6 13.9   7 5.26 0.381 12.5, 54.0 0.45
NZW/LacJ m 14.3 12.7   4 6.34 0.889 4.49, 31.2 -1.18
PL/J m 6.88 2.72   4 1.36 0.395 2.92, 9.13 -1.72
SEA/GnJ m 40.7 14.5   7 5.47 0.356 14.4, 57.3 0.75
SM/J m 32.3 17.2   16 4.3 0.532 9.72, 64.4 0.13
SWR/J m 8.82 6.68   11 2.01 0.758 1.26, 24.0 -1.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 22.445 8.5421 39.2215 5.6685
A/J m 11.528 7.6403 26.5334 0.0
AKR/J m 10.1662 6.0402 22.029 0.0
AXB10/PgnJ m 37.99 9.8636 57.3619 18.6181
AXB12/PgnJ m 9.8075 6.0402 21.6703 0.0
AXB13/PgnJ m 8.8975 6.0402 20.7603 0.0
AXB15/PgnJ m 50.5486 6.4573 63.2304 37.8667
AXB19a/PgnJ m 64.05 8.5421 80.8265 47.2735
AXB19/PgnJ m 53.298 4.4111 61.9614 44.6346
AXB1/PgnJ m 38.8325 6.0402 50.6953 26.9697
AXB23/PgnJ m 43.915 8.5421 60.6915 27.1385
AXB24/PgnJ m 30.0 6.9746 43.698 16.302
AXB2/PgnJ m 16.2562 6.0402 28.119 4.3935
AXB4/PgnJ m 58.58 8.5421 75.3565 41.8035
AXB5/PgnJ m 47.5012 6.0402 59.364 35.6385
AXB6/PgnJ m 24.4056 5.6948 35.5899 13.2212
AXB8/PgnJ m 45.0686 6.4573 57.7504 32.3867
B6cC3-1/KccJ m 24.3314 6.4573 37.0133 11.6496
BALB/cJ m 14.8508 4.9318 24.5368 5.1649
BTBR T+ Itpr3tf/J m 32.9025 6.0402 44.7653 21.0397
BUB/BnJ m 23.97 9.8636 43.3419 4.5981
BXA12/PgnJ m 34.1414 6.4573 46.8233 21.4596
BXA13/PgnJ m 16.785 5.4025 27.3954 6.1746
BXA14/PgnJ m 22.479 5.4025 33.0894 11.8686
BXA16/PgnJ m 22.7671 6.4573 35.449 10.0853
BXA1/PgnJ m 37.9467 9.8636 57.3185 18.5748
BXA24/PgnJ m 48.0333 6.9746 61.7313 34.3354
BXA25/PgnJ m 46.3388 6.0402 58.2015 34.476
BXA26/PgnJ m 9.8313 6.0402 21.694 0.0
BXA2/PgnJ m 36.2125 6.0402 48.0753 24.3497
BXA4/PgnJ m 31.2862 6.0402 43.149 19.4235
BXA7/PgnJ m 24.6825 6.0402 36.5453 12.8197
BXA8/PgnJ m 37.0425 6.0402 48.9053 25.1797
BXD11/TyJ m 53.138 7.6403 68.1434 38.1326
BXD12/TyJ m 46.6225 6.0402 58.4853 34.7597
BXD13/TyJ m 19.5875 8.5421 36.364 2.811
BXD14/TyJ m 44.28 6.0402 56.1428 32.4172
BXD15/TyJ m 32.185 6.9746 45.883 18.487
BXD16/TyJ m 36.8533 6.9746 50.5513 23.1554
BXD18/TyJ m 28.57 6.4573 41.2519 15.8881
BXD19/TyJ m 35.6757 6.4573 48.3576 22.9938
BXD1/TyJ m 48.1757 6.4573 60.8576 35.4938
BXD20/TyJ m 22.9112 6.0402 34.774 11.0485
BXD21/TyJ m 37.1583 6.9746 50.8563 23.4604
BXD24/TyJ m 45.425 8.5421 62.2015 28.6485
BXD27/TyJ m 31.6025 6.0402 43.4653 19.7397
BXD28/TyJ m 69.9975 8.5421 86.774 53.221
BXD29-Tlr4lps-2J/J m 38.6371 6.4573 51.319 25.9553
BXD2/TyJ m 28.655 8.5421 45.4315 11.8785
BXD31/TyJ m 14.81 8.5421 31.5865 0.0
BXD32/TyJ m 19.056 7.6403 34.0614 4.0506
BXD33/TyJ m 50.6633 9.8636 70.0352 31.2915
BXD34/TyJ m 33.6862 6.0402 45.549 21.8235
BXD36/TyJ m 25.815 6.0402 37.6778 13.9522
BXD38/TyJ m 41.6675 6.0402 53.5303 29.8047
BXD39/TyJ m 40.0767 5.6948 51.261 28.8923
BXD40/TyJ m 20.3012 6.0402 32.164 8.4385
BXD42/TyJ m 19.1244 5.6948 30.3088 7.9401
BXD5/TyJ m 28.6943 6.4573 41.3762 16.0124
BXD6/TyJ m 28.9843 6.4573 41.6662 16.3024
BXD8/TyJ m 32.155 6.0402 44.0178 20.2922
BXD9/TyJ m 44.2112 6.0402 56.074 32.3485
BXH10/TyJ m 28.283 5.4025 38.8934 17.6726
BXH14/TyJ m 35.9533 5.6948 47.1377 24.769
BXH19/TyJ m 47.2793 4.566 56.2467 38.3119
BXH20/KccJ m 4.35 6.9746 18.048 0.0
BXH22/KccJ m 19.0378 5.6948 30.2221 7.8534
BXH2/TyJ m 34.4867 4.4111 43.15 25.8233
BXH4/TyJ m 23.0329 6.4573 35.7147 10.351
BXH6/TyJ m 20.7112 6.0402 32.574 8.8485
BXH7/TyJ m 40.6667 9.8636 60.0385 21.2948
BXH8/TyJ m 39.3617 6.9746 53.0596 25.6637
BXH9/TyJ m 21.004 7.6403 36.0094 5.9986
C3H/HeJ m 38.3812 6.0402 50.244 26.5185
C57BL/6J m 37.9575 4.9318 47.6434 28.2716
C57L/J m 15.8663 6.0402 27.729 4.0035
C58/J m 17.46 6.0402 29.3228 5.5972
CAST/EiJ m 26.68 9.8636 46.0519 7.3081
CBA/J m 33.5218 5.1511 43.6384 23.4052
CE/J m 31.33 8.5421 48.1065 14.5535
DBA/2J m 31.3692 4.9318 41.0551 21.6832
FVB/NJ m 14.5242 4.9318 24.2101 4.8382
KK/HlJ m 24.5543 6.4573 37.2362 11.8724
LG/J m 8.4267 9.8636 27.7985 0.0
LP/J m 34.7255 5.1511 44.8421 24.6088
MA/MyJ m 13.675 8.5421 30.4515 0.0
NOD/ShiLtJ m 12.8313 6.0402 24.694 0.9685
NON/ShiLtJ m 12.9329 6.4573 25.6147 0.251
NZB/BlNJ m 36.5714 6.4573 49.2533 23.8896
NZW/LacJ m 14.2625 8.5421 31.039 0.0
PL/J m 6.8825 8.5421 23.659 0.0
SEA/GnJ m 40.6614 6.4573 53.3433 27.9796
SM/J m 32.285 4.2711 40.6733 23.8967
SWR/J m 8.82 5.1511 18.9366 0.0




  GWAS USING LINEAR MIXED MODELS