Project measure / variable:   HMDPpheno4   ftr_pre_imob

ID, description, units MPD:46821   ftr_pre_imob   fear training, percent time immobile, day 1   [%]  pre-stimulus  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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HMDPpheno4 - fear training, percent time immobile, day 1 pre-stimulus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means12.4   %
Median of the strain means11.8   %
SD of the strain means± 6.40
Coefficient of variation (CV)0.516
Min–max range of strain means0.673   –   38.3   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 23542.8663 253.1491 2.9284 < 0.0001
Residuals 593 51261.8677 86.445


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 13.7 3.0   4 1.5 0.218 9.46, 16.4 0.2
A/J m 24.1 8.58   5 3.84 0.356 15.1, 37.2 1.83
AKR/J m 16.6 9.84   8 3.48 0.594 10.2, 40.3 0.65
AXB10/PgnJ m 6.85 6.29   3 3.63 0.919 2.7, 14.1 -0.87
AXB12/PgnJ m 21.8 5.37   8 1.9 0.246 15.7, 30.2 1.47
AXB13/PgnJ m 17.2 8.58   8 3.03 0.498 10.3, 31.8 0.75
AXB15/PgnJ m 10.4 10.9   7 4.14 1.05 1.33, 27.4 -0.31
AXB19a/PgnJ m 17.6 7.19   4 3.6 0.409 8.07, 25.6 0.81
AXB19/PgnJ m 16.0 15.3   15 3.96 0.958 1.19, 57.0 0.56
AXB1/PgnJ m 13.4 5.54   8 1.96 0.414 6.41, 19.9 0.15
AXB23/PgnJ m 12.8 1.94   4 0.97 0.151 10.0, 14.3 0.06
AXB24/PgnJ m 21.3 7.93   6 3.24 0.373 14.6, 36.1 1.39
AXB2/PgnJ m 18.3 6.32   8 2.23 0.345 12.1, 29.8 0.92
AXB4/PgnJ m 13.9 5.91   4 2.95 0.424 6.64, 20.7 0.23
AXB5/PgnJ m 11.4 6.55   8 2.32 0.574 4.08, 19.7 -0.16
AXB6/PgnJ m 12.9 8.86   9 2.95 0.689 1.44, 28.6 0.08
AXB8/PgnJ m 6.17 7.59   7 2.87 1.23 0.04, 16.5 -0.97
B6cC3-1/KccJ m 10.4 1.25   7 0.474 0.12 8.7, 11.8 -0.31
BALB/cJ m 8.22 5.87   12 1.69 0.714 0.59, 15.7 -0.65
BTBR T+ Itpr3tf/J m 10.5 4.9   8 1.73 0.468 2.67, 15.3 -0.3
BUB/BnJ m 13.5 2.04   3 1.18 0.151 11.2, 15.1 0.17
BXA12/PgnJ m 6.73 3.2   7 1.21 0.476 3.67, 12.1 -0.89
BXA13/PgnJ m 14.4 10.1   10 3.2 0.706 1.78, 33.8 0.31
BXA14/PgnJ m 9.97 11.3   10 3.58 1.14 0.19, 30.0 -0.38
BXA16/PgnJ m 17.5 3.69   7 1.39 0.211 12.5, 21.8 0.79
BXA1/PgnJ m 9.12 3.27   3 1.89 0.359 6.23, 12.7 -0.51
BXA24/PgnJ m 13.6 4.78   6 1.95 0.351 6.44, 18.5 0.19
BXA25/PgnJ m 13.4 14.3   8 5.06 1.07 1.04, 36.5 0.15
BXA26/PgnJ m 16.5 7.03   8 2.48 0.426 7.12, 29.9 0.64
BXA2/PgnJ m 13.4 3.84   8 1.36 0.286 7.61, 18.8 0.15
BXA4/PgnJ m 19.6 11.8   8 4.17 0.602 6.5, 36.5 1.12
BXA7/PgnJ m 13.8 4.08   8 1.44 0.295 8.9, 19.9 0.22
BXA8/PgnJ m 6.07 4.89   8 1.73 0.805 0.55, 14.5 -0.99
BXD11/TyJ m 11.8 10.9   5 4.9 0.924 1.52, 25.4 -0.1
BXD12/TyJ m 15.6 12.0   8 4.24 0.769 2.67, 41.7 0.5
BXD13/TyJ m 1.96 1.36   4 0.68 0.696 0.71, 3.67 -1.63
BXD14/TyJ m 12.0 4.11   8 1.45 0.343 5.0, 16.5 -0.06
BXD15/TyJ m 38.3 19.1   6 7.78 0.498 23.7, 67.5 4.04
BXD16/TyJ m 8.51 4.89   6 2.0 0.575 0.52, 14.8 -0.61
BXD18/TyJ m 9.85 7.86   7 2.97 0.798 1.44, 18.6 -0.4
BXD19/TyJ m 9.94 6.93   7 2.62 0.697 3.44, 23.0 -0.39
BXD1/TyJ m 10.0 9.23   7 3.49 0.919 0.16, 21.5 -0.38
BXD20/TyJ m 11.1 7.08   8 2.5 0.64 3.15, 22.1 -0.2
BXD21/TyJ m 5.31 3.54   6 1.45 0.667 0.63, 10.9 -1.11
BXD24/TyJ m 8.28 3.78   4 1.89 0.456 5.97, 13.9 -0.64
BXD27/TyJ m 9.87 7.78   8 2.75 0.789 2.26, 20.0 -0.4
BXD28/TyJ m 8.99 7.67   4 3.83 0.852 3.18, 20.1 -0.53
BXD29-Tlr4lps-2J/J m 3.82 1.37   7 0.516 0.358 2.08, 6.23 -1.34
BXD2/TyJ m 15.7 2.87   4 1.43 0.182 11.7, 18.5 0.51
BXD31/TyJ m 7.01 4.33   4 2.16 0.617 4.12, 13.4 -0.84
BXD32/TyJ m 7.63 11.9   5 5.31 1.56 1.62, 28.8 -0.75
BXD33/TyJ m 23.8 13.9   3 8.03 0.583 7.78, 32.2 1.78
BXD34/TyJ m 16.0 13.1   8 4.61 0.815 6.34, 44.1 0.56
BXD36/TyJ m 20.8 9.14   8 3.23 0.439 10.5, 36.9 1.31
BXD38/TyJ m 13.7 7.91   8 2.8 0.579 3.41, 23.3 0.2
BXD39/TyJ m 8.79 6.51   9 2.17 0.74 1.29, 22.9 -0.57
BXD40/TyJ m 4.63 5.64   8 1.99 1.22 0.52, 15.4 -1.21
BXD42/TyJ m 9.92 5.02   9 1.67 0.506 4.27, 19.7 -0.39
BXD5/TyJ m 13.4 5.05   7 1.91 0.376 7.19, 20.7 0.15
BXD6/TyJ m 12.9 6.39   7 2.42 0.497 4.31, 22.1 0.08
BXD8/TyJ m 12.5 6.6   8 2.33 0.527 4.17, 19.8 0.01
BXD9/TyJ m 1.83 1.99   8 0.702 1.09 0.07, 4.33 -1.65
BXH10/TyJ m 9.07 9.52   10 3.01 1.05 1.01, 28.7 -0.52
BXH14/TyJ m 15.8 13.7   9 4.55 0.865 1.38, 46.9 0.53
BXH19/TyJ m 10.7 10.5   14 2.81 0.982 2.59, 43.8 -0.27
BXH20/KccJ m 7.36 3.45   6 1.41 0.469 4.19, 11.9 -0.79
BXH22/KccJ m 21.3 28.0   9 9.32 1.31 0.74, 80.2 1.39
BXH2/TyJ m 11.6 6.09   15 1.57 0.523 2.22, 20.4 -0.13
BXH4/TyJ m 2.39 1.36   7 0.512 0.568 0.67, 4.48 -1.56
BXH6/TyJ m 14.9 14.0   8 4.94 0.938 5.17, 48.0 0.39
BXH7/TyJ m 25.2 11.6   3 6.69 0.459 11.9, 32.7 2.0
BXH8/TyJ m 10.1 11.5   6 4.69 1.14 1.04, 32.7 -0.36
BXH9/TyJ m 5.37 5.58   5 2.49 1.04 0.15, 12.9 -1.1
C3H/HeJ m 3.24 2.68   8 0.949 0.828 0.45, 7.74 -1.43
C57BL/6J m 17.6 14.4   12 4.17 0.821 0.15, 43.4 0.81
C57L/J m 6.08 2.06   8 0.727 0.338 3.34, 9.64 -0.99
C58/J m 11.7 10.6   8 3.75 0.91 4.45, 36.2 -0.11
CAST/EiJ m 0.673 0.784   3 0.452 1.16 0.12, 1.57 -1.83
CBA/J m 3.04 2.01   11 0.605 0.661 0.04, 6.37 -1.46
CE/J m 19.3 4.21   4 2.1 0.218 14.1, 24.4 1.08
DBA/2J m 4.32 2.9   12 0.837 0.671 0.08, 7.83 -1.26
FVB/NJ m 11.1 6.1   12 1.76 0.552 3.11, 26.9 -0.2
KK/HlJ m 17.6 27.5   7 10.4 1.57 0.37, 61.9 0.81
LG/J m 16.5 1.13   3 0.655 0.0688 15.6, 17.8 0.64
LP/J m 6.96 4.62   11 1.39 0.663 1.26, 14.2 -0.85
MA/MyJ m 32.8 16.9   4 8.44 0.516 17.6, 52.7 3.18
NOD/ShiLtJ m 10.1 2.95   8 1.04 0.291 5.07, 14.4 -0.36
NON/ShiLtJ m 8.27 1.52   7 0.575 0.184 5.12, 9.7 -0.65
NZB/BlNJ m 13.6 13.1   7 4.95 0.966 2.78, 40.2 0.19
NZW/LacJ m 15.7 7.09   4 3.55 0.45 8.75, 25.2 0.51
PL/J m 22.7 7.42   4 3.71 0.327 16.6, 33.5 1.61
SEA/GnJ m 8.41 7.91   7 2.99 0.941 2.18, 23.2 -0.62
SM/J m 5.52 6.82   16 1.7 1.24 0.15, 22.9 -1.08
SWR/J m 12.4 12.9   11 3.88 1.03 5.1, 51.0 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 13.7475 4.6488 22.8776 4.6174
A/J m 24.068 4.158 32.2342 15.9018
AKR/J m 16.565 3.2872 23.021 10.109
AXB10/PgnJ m 6.8467 5.368 17.3892 0.0
AXB12/PgnJ m 21.8025 3.2872 28.2585 15.3465
AXB13/PgnJ m 17.2262 3.2872 23.6822 10.7703
AXB15/PgnJ m 10.4014 3.5142 17.3031 3.4997
AXB19a/PgnJ m 17.58 4.6488 26.7101 8.4499
AXB19/PgnJ m 16.0033 2.4006 20.7181 11.2886
AXB1/PgnJ m 13.395 3.2872 19.851 6.939
AXB23/PgnJ m 12.81 4.6488 21.9401 3.6799
AXB24/PgnJ m 21.2783 3.7957 28.733 13.8236
AXB2/PgnJ m 18.335 3.2872 24.791 11.879
AXB4/PgnJ m 13.9375 4.6488 23.0676 4.8074
AXB5/PgnJ m 11.4125 3.2872 17.8685 4.9565
AXB6/PgnJ m 12.8633 3.0992 18.9501 6.7766
AXB8/PgnJ m 6.1686 3.5142 13.0703 0.0
B6cC3-1/KccJ m 10.4071 3.5142 17.3088 3.5054
BALB/cJ m 8.2242 2.684 13.4954 2.9529
BTBR T+ Itpr3tf/J m 10.4637 3.2872 16.9197 4.0078
BUB/BnJ m 13.5267 5.368 24.0692 2.9841
BXA12/PgnJ m 6.7257 3.5142 13.6274 0.0
BXA13/PgnJ m 14.356 2.9402 20.1304 8.5816
BXA14/PgnJ m 9.972 2.9402 15.7464 4.1976
BXA16/PgnJ m 17.5129 3.5142 24.4146 10.6112
BXA1/PgnJ m 9.12 5.368 19.6625 0.0
BXA24/PgnJ m 13.59 3.7957 21.0447 6.1353
BXA25/PgnJ m 13.4263 3.2872 19.8822 6.9703
BXA26/PgnJ m 16.5025 3.2872 22.9585 10.0465
BXA2/PgnJ m 13.4375 3.2872 19.8935 6.9815
BXA4/PgnJ m 19.59 3.2872 26.046 13.134
BXA7/PgnJ m 13.8413 3.2872 20.2972 7.3853
BXA8/PgnJ m 6.0663 3.2872 12.5222 0.0
BXD11/TyJ m 11.85 4.158 20.0162 3.6838
BXD12/TyJ m 15.5887 3.2872 22.0447 9.1328
BXD13/TyJ m 1.955 4.6488 11.0851 0.0
BXD14/TyJ m 11.975 3.2872 18.431 5.519
BXD15/TyJ m 38.275 3.7957 45.7297 30.8203
BXD16/TyJ m 8.51 3.7957 15.9647 1.0553
BXD18/TyJ m 9.8471 3.5142 16.7488 2.9454
BXD19/TyJ m 9.9414 3.5142 16.8431 3.0397
BXD1/TyJ m 10.0414 3.5142 16.9431 3.1397
BXD20/TyJ m 11.0575 3.2872 17.5135 4.6015
BXD21/TyJ m 5.3117 3.7957 12.7664 0.0
BXD24/TyJ m 8.28 4.6488 17.4101 0.0
BXD27/TyJ m 9.865 3.2872 16.321 3.409
BXD28/TyJ m 8.9925 4.6488 18.1226 0.0
BXD29-Tlr4lps-2J/J m 3.8171 3.5142 10.7188 0.0
BXD2/TyJ m 15.73 4.6488 24.8601 6.5999
BXD31/TyJ m 7.0125 4.6488 16.1426 0.0
BXD32/TyJ m 7.628 4.158 15.7942 0.0
BXD33/TyJ m 23.83 5.368 34.3725 13.2875
BXD34/TyJ m 16.025 3.2872 22.481 9.569
BXD36/TyJ m 20.81 3.2872 27.266 14.354
BXD38/TyJ m 13.6613 3.2872 20.1172 7.2053
BXD39/TyJ m 8.79 3.0992 14.8767 2.7033
BXD40/TyJ m 4.6338 3.2872 11.0897 0.0
BXD42/TyJ m 9.9189 3.0992 16.0056 3.8322
BXD5/TyJ m 13.4129 3.5142 20.3146 6.5112
BXD6/TyJ m 12.8529 3.5142 19.7546 5.9512
BXD8/TyJ m 12.5225 3.2872 18.9785 6.0665
BXD9/TyJ m 1.83 3.2872 8.286 0.0
BXH10/TyJ m 9.073 2.9402 14.8474 3.2986
BXH14/TyJ m 15.7889 3.0992 21.8756 9.7022
BXH19/TyJ m 10.6864 2.4849 15.5667 5.8062
BXH20/KccJ m 7.3583 3.7957 14.813 0.0
BXH22/KccJ m 21.3256 3.0992 27.4123 15.2388
BXH2/TyJ m 11.6467 2.4006 16.3614 6.9319
BXH4/TyJ m 2.3857 3.5142 9.2874 0.0
BXH6/TyJ m 14.8838 3.2872 21.3397 8.4278
BXH7/TyJ m 25.24 5.368 35.7825 14.6975
BXH8/TyJ m 10.1083 3.7957 17.563 2.6536
BXH9/TyJ m 5.37 4.158 13.5362 0.0
C3H/HeJ m 3.2388 3.2872 9.6947 0.0
C57BL/6J m 17.5875 2.684 22.8588 12.3162
C57L/J m 6.0813 3.2872 12.5372 0.0
C58/J m 11.655 3.2872 18.111 5.199
CAST/EiJ m 0.6733 5.368 11.2159 0.0
CBA/J m 3.0355 2.8033 8.5411 0.0
CE/J m 19.2625 4.6488 28.3926 10.1324
DBA/2J m 4.32 2.684 9.5913 0.0
FVB/NJ m 11.05 2.684 16.3213 5.7787
KK/HlJ m 17.5657 3.5142 24.4674 10.664
LG/J m 16.48 5.368 27.0225 5.9375
LP/J m 6.9636 2.8033 12.4693 1.458
MA/MyJ m 32.75 4.6488 41.8801 23.6199
NOD/ShiLtJ m 10.1362 3.2872 16.5922 3.6803
NON/ShiLtJ m 8.2714 3.5142 15.1731 1.3697
NZB/BlNJ m 13.5671 3.5142 20.4688 6.6654
NZW/LacJ m 15.745 4.6488 24.8751 6.6149
PL/J m 22.7175 4.6488 31.8476 13.5874
SEA/GnJ m 8.4114 3.5142 15.3131 1.5097
SM/J m 5.5156 2.3244 10.0807 0.9506
SWR/J m 12.4491 2.8033 17.9547 6.9434




  GWAS USING LINEAR MIXED MODELS