Project measure / variable:   HMDPpheno4   ftr_pre_thig

ID, description, units MPD:46801   ftr_pre_thig   fear training, percent time spent near chamber walls, day1   [%]  pre-stimulus  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno4 - fear training, percent time spent near chamber walls, day1 pre-stimulus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means55.5   %
Median of the strain means56.2   %
SD of the strain means± 12.3
Coefficient of variation (CV)0.222
Min–max range of strain means28.6   –   82.9   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 93481.8125 1005.1808 3.4455 < 0.0001
Residuals 593 172998.6962 291.7347


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 36.1 8.69   4 4.34 0.241 26.0, 46.0 -1.57
A/J m 60.6 16.8   5 7.51 0.277 44.6, 88.3 0.42
AKR/J m 60.5 7.52   8 2.66 0.124 43.6, 67.7 0.41
AXB10/PgnJ m 28.6 15.5   3 8.93 0.54 11.9, 42.4 -2.18
AXB12/PgnJ m 62.9 19.5   8 6.9 0.31 37.3, 86.4 0.6
AXB13/PgnJ m 67.6 16.0   8 5.67 0.237 41.4, 91.9 0.98
AXB15/PgnJ m 65.3 20.2   7 7.65 0.31 40.1, 89.9 0.8
AXB19a/PgnJ m 63.8 4.81   4 2.4 0.0753 57.9, 69.1 0.68
AXB19/PgnJ m 58.7 24.6   15 6.34 0.418 15.2, 100.0 0.26
AXB1/PgnJ m 66.3 17.8   8 6.3 0.269 39.5, 84.5 0.88
AXB23/PgnJ m 82.9 3.81   4 1.9 0.046 78.7, 87.9 2.22
AXB24/PgnJ m 69.1 9.94   6 4.06 0.144 54.7, 83.0 1.11
AXB2/PgnJ m 65.1 12.9   8 4.57 0.198 52.3, 85.8 0.78
AXB4/PgnJ m 47.4 29.2   4 14.6 0.616 9.39, 74.0 -0.65
AXB5/PgnJ m 54.6 14.0   8 4.94 0.256 38.1, 84.5 -0.07
AXB6/PgnJ m 48.1 12.4   9 4.14 0.258 33.5, 71.6 -0.6
AXB8/PgnJ m 71.3 10.4   7 3.93 0.146 53.1, 84.9 1.28
B6cC3-1/KccJ m 51.4 4.2   7 1.59 0.0817 46.5, 60.1 -0.33
BALB/cJ m 34.6 16.3   12 4.7 0.471 6.74, 58.8 -1.69
BTBR T+ Itpr3tf/J m 57.6 9.81   8 3.47 0.17 43.2, 73.5 0.17
BUB/BnJ m 47.7 5.6   3 3.23 0.117 41.4, 52.1 -0.63
BXA12/PgnJ m 81.5 6.61   7 2.5 0.0811 71.4, 90.7 2.11
BXA13/PgnJ m 52.1 21.5   10 6.79 0.412 31.9, 90.5 -0.27
BXA14/PgnJ m 39.7 22.0   10 6.96 0.555 4.41, 79.0 -1.28
BXA16/PgnJ m 66.2 16.8   7 6.35 0.254 40.8, 88.0 0.87
BXA1/PgnJ m 79.1 5.39   3 3.11 0.0681 75.1, 85.2 1.92
BXA24/PgnJ m 62.5 14.7   6 6.01 0.235 52.2, 82.8 0.57
BXA25/PgnJ m 61.5 22.6   8 7.99 0.367 38.6, 92.2 0.49
BXA26/PgnJ m 62.8 14.0   8 4.96 0.223 47.2, 85.0 0.59
BXA2/PgnJ m 69.6 11.1   8 3.93 0.16 57.1, 88.2 1.15
BXA4/PgnJ m 54.1 21.7   8 7.66 0.401 16.3, 83.1 -0.11
BXA7/PgnJ m 73.6 10.2   8 3.62 0.139 57.1, 86.5 1.47
BXA8/PgnJ m 71.7 10.6   8 3.75 0.148 50.7, 86.1 1.32
BXD11/TyJ m 50.8 21.0   5 9.4 0.413 33.4, 80.9 -0.38
BXD12/TyJ m 46.7 19.7   8 6.97 0.422 16.0, 65.9 -0.71
BXD13/TyJ m 34.9 19.1   4 9.54 0.547 18.2, 57.0 -1.67
BXD14/TyJ m 53.2 21.5   8 7.6 0.404 26.3, 80.9 -0.18
BXD15/TyJ m 78.8 7.91   6 3.23 0.1 70.2, 92.4 1.89
BXD16/TyJ m 70.3 9.04   6 3.69 0.129 55.5, 78.7 1.2
BXD18/TyJ m 64.1 8.68   7 3.28 0.136 51.4, 77.0 0.7
BXD19/TyJ m 36.9 14.2   7 5.35 0.384 19.9, 57.0 -1.51
BXD1/TyJ m 60.3 19.1   7 7.22 0.317 23.4, 77.4 0.39
BXD20/TyJ m 69.2 16.5   8 5.83 0.238 49.3, 87.5 1.11
BXD21/TyJ m 43.2 13.7   6 5.58 0.316 26.8, 66.7 -0.99
BXD24/TyJ m 39.4 9.8   4 4.9 0.249 29.5, 52.4 -1.3
BXD27/TyJ m 56.7 27.7   8 9.8 0.489 17.9, 87.0 0.1
BXD28/TyJ m 38.6 28.6   4 14.3 0.739 9.19, 75.7 -1.37
BXD29-Tlr4lps-2J/J m 62.0 10.2   7 3.85 0.164 50.0, 74.6 0.53
BXD2/TyJ m 66.0 5.33   4 2.66 0.0807 58.8, 71.6 0.85
BXD31/TyJ m 37.2 15.1   4 7.55 0.405 23.1, 56.3 -1.48
BXD32/TyJ m 54.3 12.7   5 5.68 0.234 32.2, 62.6 -0.09
BXD33/TyJ m 65.4 16.6   3 9.58 0.254 55.5, 84.6 0.81
BXD34/TyJ m 34.7 18.0   8 6.38 0.52 4.41, 65.1 -1.68
BXD36/TyJ m 58.2 16.7   8 5.91 0.287 28.2, 76.1 0.22
BXD38/TyJ m 48.5 11.1   8 3.91 0.228 30.7, 66.6 -0.57
BXD39/TyJ m 61.9 25.9   9 8.62 0.418 20.1, 89.0 0.52
BXD40/TyJ m 43.2 25.3   8 8.96 0.587 4.56, 70.9 -0.99
BXD42/TyJ m 54.9 21.1   9 7.04 0.384 24.5, 81.2 -0.05
BXD5/TyJ m 43.5 25.4   7 9.62 0.585 13.8, 77.6 -0.97
BXD6/TyJ m 64.0 16.6   7 6.28 0.26 37.8, 81.3 0.69
BXD8/TyJ m 59.0 25.4   8 9.0 0.431 18.7, 89.4 0.29
BXD9/TyJ m 53.9 19.4   8 6.84 0.359 37.3, 87.6 -0.13
BXH10/TyJ m 40.9 26.4   10 8.35 0.646 0.11, 77.3 -1.18
BXH14/TyJ m 50.8 22.7   9 7.56 0.447 6.01, 69.6 -0.38
BXH19/TyJ m 55.5 7.77   14 2.08 0.14 43.9, 72.9 0.0
BXH20/KccJ m 47.5 8.29   6 3.38 0.174 37.0, 56.8 -0.65
BXH22/KccJ m 49.2 15.0   9 5.0 0.305 30.6, 68.2 -0.51
BXH2/TyJ m 31.1 29.7   15 7.68 0.957 1.3, 86.2 -1.98
BXH4/TyJ m 46.7 8.09   7 3.06 0.173 32.7, 57.6 -0.71
BXH6/TyJ m 45.1 19.4   8 6.85 0.43 18.4, 77.4 -0.84
BXH7/TyJ m 63.6 15.7   3 9.05 0.246 49.4, 80.4 0.66
BXH8/TyJ m 29.2 13.3   6 5.43 0.456 11.2, 49.4 -2.13
BXH9/TyJ m 56.3 14.4   5 6.46 0.256 36.0, 72.4 0.07
C3H/HeJ m 37.6 9.37   8 3.31 0.249 22.2, 51.8 -1.45
C57BL/6J m 62.6 15.0   12 4.34 0.24 35.8, 81.9 0.58
C57L/J m 42.6 7.52   8 2.66 0.177 32.4, 55.3 -1.04
C58/J m 48.6 20.6   8 7.28 0.424 2.45, 62.4 -0.56
CAST/EiJ m 73.0 26.7   3 15.4 0.365 42.4, 91.2 1.42
CBA/J m 46.3 9.98   11 3.01 0.216 35.3, 67.1 -0.74
CE/J m 56.1 4.74   4 2.37 0.0845 50.4, 60.5 0.05
DBA/2J m 54.5 13.1   12 3.79 0.241 35.2, 84.2 -0.08
FVB/NJ m 60.1 9.9   12 2.86 0.165 33.3, 71.1 0.38
KK/HlJ m 47.2 14.5   7 5.48 0.307 33.1, 71.6 -0.67
LG/J m 56.3 1.98   3 1.14 0.0352 54.0, 57.7 0.07
LP/J m 61.4 16.4   11 4.94 0.267 24.0, 82.9 0.48
MA/MyJ m 74.6 17.8   4 8.92 0.239 54.9, 96.0 1.55
NOD/ShiLtJ m 74.4 15.3   8 5.4 0.205 44.9, 94.3 1.53
NON/ShiLtJ m 50.9 6.16   7 2.33 0.121 43.3, 60.8 -0.37
NZB/BlNJ m 63.7 23.1   7 8.73 0.362 31.1, 89.4 0.67
NZW/LacJ m 59.7 4.73   4 2.36 0.0791 53.5, 63.4 0.34
PL/J m 50.0 8.14   4 4.07 0.163 40.6, 60.5 -0.44
SEA/GnJ m 48.9 24.0   7 9.08 0.491 4.86, 79.5 -0.53
SM/J m 56.7 13.7   16 3.42 0.241 35.0, 76.4 0.1
SWR/J m 48.8 14.6   11 4.41 0.3 11.3, 60.4 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 36.0675 8.5401 52.8401 19.2949
A/J m 60.592 7.6385 75.5938 45.5902
AKR/J m 60.49 6.0388 72.35 48.63
AXB10/PgnJ m 28.63 9.8613 47.9973 9.2627
AXB12/PgnJ m 62.8575 6.0388 74.7175 50.9975
AXB13/PgnJ m 67.6037 6.0388 79.4637 55.7438
AXB15/PgnJ m 65.3486 6.4557 78.0274 52.6697
AXB19a/PgnJ m 63.825 8.5401 80.5976 47.0524
AXB19/PgnJ m 58.7273 4.4101 67.3886 50.066
AXB1/PgnJ m 66.3125 6.0388 78.1725 54.4525
AXB23/PgnJ m 82.86 8.5401 99.6326 66.0874
AXB24/PgnJ m 69.0683 6.973 82.7631 55.3736
AXB2/PgnJ m 65.1313 6.0388 76.9912 53.2713
AXB4/PgnJ m 47.38 8.5401 64.1526 30.6074
AXB5/PgnJ m 54.5913 6.0388 66.4512 42.7313
AXB6/PgnJ m 48.0989 5.6934 59.2806 36.9172
AXB8/PgnJ m 71.2543 6.4557 83.9332 58.5754
B6cC3-1/KccJ m 51.3929 6.4557 64.0717 38.714
BALB/cJ m 34.5683 4.9306 44.252 24.8847
BTBR T+ Itpr3tf/J m 57.6437 6.0388 69.5037 45.7838
BUB/BnJ m 47.6833 9.8613 67.0506 28.316
BXA12/PgnJ m 81.5214 6.4557 94.2003 68.8426
BXA13/PgnJ m 52.133 5.4012 62.7409 41.5251
BXA14/PgnJ m 39.676 5.4012 50.2839 29.0681
BXA16/PgnJ m 66.2386 6.4557 78.9174 53.5597
BXA1/PgnJ m 79.12 9.8613 98.4873 59.7527
BXA24/PgnJ m 62.5283 6.973 76.2231 48.8336
BXA25/PgnJ m 61.49 6.0388 73.35 49.63
BXA26/PgnJ m 62.7925 6.0388 74.6525 50.9325
BXA2/PgnJ m 69.5763 6.0388 81.4362 57.7163
BXA4/PgnJ m 54.0563 6.0388 65.9162 42.1963
BXA7/PgnJ m 73.5875 6.0388 85.4475 61.7275
BXA8/PgnJ m 71.695 6.0388 83.555 59.835
BXD11/TyJ m 50.816 7.6385 65.8178 35.8142
BXD12/TyJ m 46.72 6.0388 58.58 34.86
BXD13/TyJ m 34.9025 8.5401 51.6751 18.1299
BXD14/TyJ m 53.2113 6.0388 65.0712 41.3513
BXD15/TyJ m 78.8233 6.973 92.5181 65.1286
BXD16/TyJ m 70.2783 6.973 83.9731 56.5836
BXD18/TyJ m 64.0529 6.4557 76.7317 51.374
BXD19/TyJ m 36.8986 6.4557 49.5774 24.2197
BXD1/TyJ m 60.31 6.4557 72.9889 47.6311
BXD20/TyJ m 69.23 6.0388 81.09 57.37
BXD21/TyJ m 43.2367 6.973 56.9314 29.5419
BXD24/TyJ m 39.36 8.5401 56.1326 22.5874
BXD27/TyJ m 56.7213 6.0388 68.5812 44.8613
BXD28/TyJ m 38.6475 8.5401 55.4201 21.8749
BXD29-Tlr4lps-2J/J m 62.0071 6.4557 74.686 49.3283
BXD2/TyJ m 65.9875 8.5401 82.7601 49.2149
BXD31/TyJ m 37.2475 8.5401 54.0201 20.4749
BXD32/TyJ m 54.264 7.6385 69.2658 39.2622
BXD33/TyJ m 65.4467 9.8613 84.814 46.0794
BXD34/TyJ m 34.6662 6.0388 46.5262 22.8063
BXD36/TyJ m 58.2463 6.0388 70.1062 46.3863
BXD38/TyJ m 48.4812 6.0388 60.3412 36.6213
BXD39/TyJ m 61.8933 5.6934 73.075 50.7116
BXD40/TyJ m 43.1963 6.0388 55.0562 31.3363
BXD42/TyJ m 54.9011 5.6934 66.0828 43.7194
BXD5/TyJ m 43.47 6.4557 56.1489 30.7911
BXD6/TyJ m 63.9629 6.4557 76.6417 51.284
BXD8/TyJ m 59.0138 6.0388 70.8737 47.1538
BXD9/TyJ m 53.8525 6.0388 65.7125 41.9925
BXH10/TyJ m 40.854 5.4012 51.4619 30.2461
BXH14/TyJ m 50.7767 5.6934 61.9584 39.595
BXH19/TyJ m 55.5136 4.5649 64.4789 46.5483
BXH20/KccJ m 47.51 6.973 61.2047 33.8153
BXH22/KccJ m 49.2422 5.6934 60.4239 38.0605
BXH2/TyJ m 31.0653 4.4101 39.7266 22.404
BXH4/TyJ m 46.6571 6.4557 59.336 33.9783
BXH6/TyJ m 45.0712 6.0388 56.9312 33.2113
BXH7/TyJ m 63.64 9.8613 83.0073 44.2727
BXH8/TyJ m 29.18 6.973 42.8747 15.4853
BXH9/TyJ m 56.344 7.6385 71.3458 41.3422
C3H/HeJ m 37.575 6.0388 49.435 25.715
C57BL/6J m 62.5858 4.9306 72.2695 52.9022
C57L/J m 42.6075 6.0388 54.4675 30.7475
C58/J m 48.5525 6.0388 60.4125 36.6925
CAST/EiJ m 73.0333 9.8613 92.4006 53.666
CBA/J m 46.2955 5.1499 56.4097 36.1812
CE/J m 56.0775 8.5401 72.8501 39.3049
DBA/2J m 54.5058 4.9306 64.1895 44.8222
FVB/NJ m 60.0858 4.9306 69.7695 50.4022
KK/HlJ m 47.2229 6.4557 59.9017 34.544
LG/J m 56.2867 9.8613 75.654 36.9194
LP/J m 61.3955 5.1499 71.5097 51.2812
MA/MyJ m 74.645 8.5401 91.4176 57.8724
NOD/ShiLtJ m 74.425 6.0388 86.285 62.565
NON/ShiLtJ m 50.9457 6.4557 63.6246 38.2668
NZB/BlNJ m 63.7171 6.4557 76.396 51.0383
NZW/LacJ m 59.7425 8.5401 76.5151 42.9699
PL/J m 49.96 8.5401 66.7326 33.1874
SEA/GnJ m 48.8814 6.4557 61.5603 36.2026
SM/J m 56.7262 4.2701 65.1125 48.34
SWR/J m 48.7836 5.1499 58.8979 38.6694




  GWAS USING LINEAR MIXED MODELS