Project measure / variable:   HMDPpheno2   pct_fat

ID, description, units MPD:46407   pct_fat   percentage of tissue mass that is fat, whole body with head (NMR)   [%]  
Data set, strains HMDPpheno2   HMDP w/par   99 strains     sex: m     age: 16wks
Procedure NMR
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  STRAIN COMPARISON PLOT
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HMDPpheno2 - percentage of tissue mass that is fat, whole body with head (NMR)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means14.6   %
Median of the strain means13.7   %
SD of the strain means± 6.07
Coefficient of variation (CV)0.415
Min–max range of strain means4.82   –   33.8   %
Mean sample size per strain7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 98 25607.7868 261.3039 18.8125 < 0.0001
Residuals 605 8403.3948 13.8899


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 14.5 3.21   10 1.01 0.222 8.67, 20.3 -0.02
A/J m 14.8 4.25   10 1.35 0.288 9.38, 21.4 0.03
AKR/J m 24.7 4.21   10 1.33 0.17 17.8, 31.5 1.67
AXB10/PgnJ m 19.0 5.17   5 2.31 0.271 12.4, 24.2 0.73
AXB12/PgnJ m 10.0 1.08   6 0.439 0.107 8.72, 11.3 -0.76
AXB13/PgnJ m 8.87 2.88   6 1.18 0.325 6.5, 14.3 -0.94
AXB15/PgnJ m 11.1 1.51   6 0.618 0.136 8.71, 13.2 -0.58
AXB19a/PgnJ m 13.3 3.88   5 1.74 0.292 8.32, 18.0 -0.21
AXB19b/PgnJ m 5.26 1.47   8 0.521 0.28 1.86, 6.51 -1.54
AXB19/PgnJ m 7.47 2.15   6 0.878 0.288 4.89, 10.0 -1.18
AXB1/PgnJ m 7.27 3.19   6 1.3 0.439 3.08, 11.0 -1.21
AXB23/PgnJ m 16.8 3.61   6 1.48 0.216 10.9, 21.9 0.36
AXB24/PgnJ m 9.59 5.76   5 2.57 0.601 5.98, 19.7 -0.83
AXB2/PgnJ m 7.93 1.04   6 0.426 0.131 7.17, 9.57 -1.1
AXB4/PgnJ m 10.8 2.95   6 1.2 0.274 4.89, 12.9 -0.63
AXB5/PgnJ m 11.3 1.27   4 0.637 0.113 10.2, 13.1 -0.54
AXB6/PgnJ m 9.52 3.03   8 1.07 0.318 5.35, 15.5 -0.84
AXB8/PgnJ m 20.0 3.06   6 1.25 0.153 15.3, 24.6 0.89
B6cC3-1/KccJ m 16.2 3.85   6 1.57 0.238 11.8, 23.2 0.26
BALB/cJ m 10.0 3.17   10 1.0 0.315 6.36, 16.7 -0.76
BTBR T+ Itpr3tf/J m 16.6 4.36   10 1.38 0.263 7.63, 21.3 0.33
BUB/BnJ m 13.8 2.7   9 0.9 0.196 9.03, 17.1 -0.13
BXA11/PgnJ m 27.1 3.57   6 1.46 0.132 20.9, 30.9 2.06
BXA12/PgnJ m 12.5 2.29   5 1.02 0.183 9.76, 15.1 -0.35
BXA13/PgnJ m 7.59 1.47   6 0.6 0.194 5.68, 8.85 -1.16
BXA14/PgnJ m 6.76 4.84   6 1.97 0.716 1.19, 15.1 -1.29
BXA16/PgnJ m 16.5 5.49   7 2.07 0.333 10.3, 23.6 0.31
BXA1/PgnJ m 19.9 7.7   2   5.45 0.388 14.4, 25.3 0.87
BXA24/PgnJ m 13.0 1.56   6 0.635 0.12 10.8, 15.2 -0.26
BXA25/PgnJ m 16.9 1.19   6 0.486 0.0705 15.2, 18.0 0.38
BXA26/PgnJ m 9.89 1.78   6 0.728 0.18 7.82, 12.5 -0.78
BXA2/PgnJ m 21.8 3.09   6 1.26 0.142 17.9, 24.6 1.19
BXA4/PgnJ m 8.03 2.17   6 0.885 0.27 6.33, 11.9 -1.08
BXA7/PgnJ m 10.7 1.82   6 0.743 0.17 9.08, 14.1 -0.64
BXA8/PgnJ m 23.4 2.85   6 1.16 0.122 19.8, 28.3 1.45
BXD11/TyJ m 14.2 9.38   4 4.69 0.66 6.53, 27.9 -0.07
BXD12/TyJ m 8.77 2.9   6 1.18 0.331 5.3, 13.6 -0.96
BXD13/TyJ m 16.9 7.63   6 3.12 0.453 7.39, 27.7 0.38
BXD14/TyJ m 20.9 5.76   6 2.35 0.275 11.9, 28.5 1.04
BXD15/TyJ m 8.53 3.66   4 1.83 0.429 5.53, 13.9 -1.0
BXD16/TyJ m 22.7 1.58   4 0.789 0.0695 21.0, 24.8 1.34
BXD18/TyJ m 10.0 3.69   2   2.61 0.369 7.4, 12.6 -0.76
BXD19/TyJ m 20.7 1.85   8 0.653 0.0894 18.9, 23.9 1.01
BXD1/TyJ m 8.72 0.408   3 0.236 0.0468 8.27, 9.07 -0.97
BXD20/TyJ m 5.32 1.0   6 0.41 0.189 3.85, 6.65 -1.53
BXD21/TyJ m 12.1 4.19   5 1.87 0.347 6.76, 16.6 -0.41
BXD22/TyJ m 11.8 3.27   2   2.32 0.277 9.5, 14.1 -0.46
BXD24/TyJ-Cep290rd16/J m 30.3 2.94   6 1.2 0.0972 26.5, 34.6 2.59
BXD27/TyJ m 4.82 4.74   5 2.12 0.982 1.37, 13.1 -1.61
BXD28/TyJ m 15.0 8.91   5 3.98 0.594 3.15, 24.9 0.07
BXD29-Tlr4lps-2J/J m 8.76 2.25   6 0.92 0.257 5.77, 10.8 -0.96
BXD2/TyJ m 10.3 1.76   4 0.881 0.17 8.76, 12.8 -0.71
BXD31/TyJ m 18.2 5.07   4 2.54 0.279 12.1, 23.1 0.59
BXD32/TyJ m 14.0 4.48   6 1.83 0.319 10.2, 20.4 -0.1
BXD33/TyJ m 4.99 1.16   6 0.473 0.232 3.87, 6.59 -1.58
BXD34/TyJ m 12.4 3.61   6 1.47 0.291 9.06, 18.1 -0.36
BXD36/TyJ m 19.2 2.39   4 1.19 0.124 17.5, 22.6 0.76
BXD38/TyJ m 17.1 2.33   4 1.17 0.137 14.2, 19.6 0.41
BXD39/TyJ m 33.8 3.56   6 1.45 0.105 28.9, 36.9 3.17
BXD40/TyJ m 12.3 2.15   6 0.88 0.176 8.68, 15.4 -0.38
BXD42/TyJ m 11.6 3.76   6 1.53 0.323 7.83, 17.6 -0.49
BXD5/TyJ m 17.4 2.66   6 1.09 0.154 13.7, 20.6 0.46
BXD6/TyJ m 13.9 1.48   6 0.604 0.107 11.3, 15.5 -0.12
BXD8/TyJ m 11.0 2.91   6 1.19 0.264 6.86, 14.5 -0.59
BXD9/TyJ m 29.7 2.12   6 0.864 0.0712 26.6, 32.1 2.49
BXH10/TyJ m 15.9 3.29   6 1.35 0.207 9.97, 18.6 0.21
BXH14/TyJ m 20.9 3.96   9 1.32 0.189 14.8, 26.6 1.04
BXH19/TyJ m 7.78 1.31   18 0.309 0.169 5.14, 10.4 -1.12
BXH20/KccJ m 10.1 1.99   8 0.702 0.196 5.45, 11.5 -0.74
BXH22/KccJ m 16.8 3.38   11 1.02 0.201 11.3, 20.4 0.36
BXH2/TyJ m 7.85 3.46   9 1.15 0.44 4.42, 16.4 -1.11
BXH4/TyJ m 17.8 4.91   11 1.48 0.275 10.3, 23.8 0.53
BXH6/TyJ m 15.5 4.48   11 1.35 0.29 9.91, 24.5 0.15
BXH7/TyJ m 11.6 2.15   10 0.68 0.186 8.42, 15.0 -0.49
BXH8/TyJ m 13.9 3.6   11 1.09 0.26 7.99, 19.9 -0.12
BXH9/TyJ m 24.7 3.06   10 0.969 0.124 20.6, 29.1 1.67
C3H/HeJ m 17.4 3.47   10 1.1 0.2 12.9, 24.4 0.46
C57BL/6J m 10.6 4.89   11 1.47 0.462 5.51, 21.0 -0.66
C57L/J m 13.7 5.44   10 1.72 0.397 5.47, 21.2 -0.15
C58/J m 7.4 1.56   10 0.494 0.211 5.07, 9.48 -1.19
CBA/J m 20.6 2.51   10 0.795 0.122 15.8, 23.2 0.99
CE/J m 25.3 4.62   9 1.54 0.183 17.3, 31.6 1.76
DBA/2J m 21.4 3.53   10 1.12 0.165 13.8, 25.7 1.12
FVB/NJ m 11.5 3.04   5 1.36 0.264 6.42, 14.3 -0.51
I/LnJ m 12.7 3.61   9 1.2 0.285 8.86, 18.2 -0.31
KK/HlJ m 22.4 4.92   8 1.74 0.219 14.9, 29.3 1.29
LG/J m 20.4 3.09   7 1.17 0.152 14.7, 24.7 0.96
LP/J m 12.6 3.44   10 1.09 0.273 6.99, 17.8 -0.33
MA/MyJ m 11.4 1.5   6 0.611 0.132 9.82, 13.3 -0.53
NOD/ShiLtJ m 10.9 2.57   10 0.813 0.236 6.84, 13.9 -0.61
NON/ShiLtJ m 26.6 4.4   13 1.22 0.165 17.9, 32.9 1.98
NZB/BlNJ m 16.6 4.56   7 1.72 0.274 8.53, 21.5 0.33
NZW/LacJ m 16.0 4.97   10 1.57 0.31 6.09, 21.7 0.23
PL/J m 18.5 5.32   10 1.68 0.287 12.8, 26.5 0.64
RIIIS/J m 19.7 4.39   10 1.39 0.223 12.4, 25.4 0.84
SEA/GnJ m 19.2 5.36   11 1.62 0.279 6.53, 25.9 0.76
SJL/J m 9.94 0.891   2   0.63 0.0896 9.31, 10.6 -0.77
SM/J m 12.0 4.36   10 1.38 0.362 4.26, 17.8 -0.43
SWR/J m 7.56 4.71   10 1.49 0.623 -1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 14.467 1.1786 16.7816 12.1524
A/J m 14.769 1.1786 17.0836 12.4544
AKR/J m 24.711 1.1786 27.0256 22.3964
AXB10/PgnJ m 19.026 1.6667 22.2993 15.7527
AXB12/PgnJ m 10.015 1.5215 13.0031 7.0269
AXB13/PgnJ m 8.8667 1.5215 11.8547 5.8786
AXB15/PgnJ m 11.1367 1.5215 14.1247 8.1486
AXB19a/PgnJ m 13.316 1.6667 16.5893 10.0427
AXB19b/PgnJ m 5.26 1.3177 7.8478 2.6722
AXB19/PgnJ m 7.4683 1.5215 10.4564 4.4803
AXB1/PgnJ m 7.265 1.5215 10.2531 4.2769
AXB23/PgnJ m 16.7633 1.5215 19.7514 13.7753
AXB24/PgnJ m 9.586 1.6667 12.8593 6.3127
AXB2/PgnJ m 7.93 1.5215 10.9181 4.9419
AXB4/PgnJ m 10.77 1.5215 13.7581 7.7819
AXB5/PgnJ m 11.3 1.8635 14.9596 7.6404
AXB6/PgnJ m 9.52 1.3177 12.1078 6.9322
AXB8/PgnJ m 20.045 1.5215 23.0331 17.0569
B6cC3-1/KccJ m 16.2117 1.5215 19.1997 13.2236
BALB/cJ m 10.047 1.1786 12.3616 7.7324
BTBR T+ Itpr3tf/J m 16.571 1.1786 18.8856 14.2564
BUB/BnJ m 13.78 1.2423 16.2198 11.3402
BXA11/PgnJ m 27.1133 1.5215 30.1014 24.1253
BXA12/PgnJ m 12.514 1.6667 15.7873 9.2407
BXA13/PgnJ m 7.5883 1.5215 10.5764 4.6003
BXA14/PgnJ m 6.7583 1.5215 9.7464 3.7703
BXA16/PgnJ m 16.4657 1.4086 19.2321 13.6993
BXA1/PgnJ m 19.865 2.6353 25.0405 14.6895
BXA24/PgnJ m 12.995 1.5215 15.9831 10.0069
BXA25/PgnJ m 16.875 1.5215 19.8631 13.8869
BXA26/PgnJ m 9.8933 1.5215 12.8814 6.9053
BXA2/PgnJ m 21.8217 1.5215 24.8097 18.8336
BXA4/PgnJ m 8.0333 1.5215 11.0214 5.0453
BXA7/PgnJ m 10.7183 1.5215 13.7064 7.7303
BXA8/PgnJ m 23.3917 1.5215 26.3797 20.4036
BXD11/TyJ m 14.21 1.8635 17.8696 10.5504
BXD12/TyJ m 8.7733 1.5215 11.7614 5.7853
BXD13/TyJ m 16.8617 1.5215 19.8497 13.8736
BXD14/TyJ m 20.91 1.5215 23.8981 17.9219
BXD15/TyJ m 8.5275 1.8635 12.1871 4.8679
BXD16/TyJ m 22.695 1.8635 26.3546 19.0354
BXD18/TyJ m 10.01 2.6353 15.1855 4.8345
BXD19/TyJ m 20.6688 1.3177 23.2565 18.081
BXD1/TyJ m 8.7167 2.1517 12.9424 4.4909
BXD20/TyJ m 5.315 1.5215 8.3031 2.3269
BXD21/TyJ m 12.084 1.6667 15.3573 8.8107
BXD22/TyJ m 11.815 2.6353 16.9905 6.6395
BXD24/TyJ-Cep290rd16/J m 30.27 1.5215 33.2581 27.2819
BXD27/TyJ m 4.824 1.6667 8.0973 1.5507
BXD28/TyJ m 15.002 1.6667 18.2753 11.7287
BXD29-Tlr4lps-2J/J m 8.7583 1.5215 11.7464 5.7703
BXD2/TyJ m 10.3325 1.8635 13.9921 6.6729
BXD31/TyJ m 18.17 1.8635 21.8296 14.5104
BXD32/TyJ m 14.0483 1.5215 17.0364 11.0603
BXD33/TyJ m 4.9917 1.5215 7.9797 2.0036
BXD34/TyJ m 12.3833 1.5215 15.3714 9.3953
BXD36/TyJ m 19.1725 1.8635 22.8321 15.5129
BXD38/TyJ m 17.06 1.8635 20.7196 13.4004
BXD39/TyJ m 33.84 1.5215 36.8281 30.8519
BXD40/TyJ m 12.2617 1.5215 15.2497 9.2736
BXD42/TyJ m 11.625 1.5215 14.6131 8.6369
BXD5/TyJ m 17.3533 1.5215 20.3414 14.3653
BXD6/TyJ m 13.8533 1.5215 16.8414 10.8653
BXD8/TyJ m 10.9983 1.5215 13.9864 8.0103
BXD9/TyJ m 29.7033 1.5215 32.6914 26.7153
BXH10/TyJ m 15.9 1.5215 18.8881 12.9119
BXH14/TyJ m 20.9222 1.2423 23.362 18.4825
BXH19/TyJ m 7.7761 0.8784 9.5013 6.0509
BXH20/KccJ m 10.1075 1.3177 12.6953 7.5197
BXH22/KccJ m 16.7845 1.1237 18.9914 14.5777
BXH2/TyJ m 7.8544 1.2423 10.2942 5.4147
BXH4/TyJ m 17.84 1.1237 20.0468 15.6332
BXH6/TyJ m 15.4618 1.1237 17.6687 13.255
BXH7/TyJ m 11.559 1.1786 13.8736 9.2444
BXH8/TyJ m 13.8518 1.1237 16.0587 11.645
BXH9/TyJ m 24.667 1.1786 26.9816 22.3524
C3H/HeJ m 17.377 1.1786 19.6916 15.0624
C57BL/6J m 10.5709 1.1237 12.7778 8.3641
C57L/J m 13.695 1.1786 16.0096 11.3804
C58/J m 7.401 1.1786 9.7156 5.0864
CBA/J m 20.61 1.1786 22.9246 18.2954
CE/J m 25.2533 1.2423 27.6931 22.8136
DBA/2J m 21.407 1.1786 23.7216 19.0924
FVB/NJ m 11.532 1.6667 14.8053 8.2587
I/LnJ m 12.6622 1.2423 15.102 10.2225
KK/HlJ m 22.4238 1.3177 25.0115 19.836
LG/J m 20.38 1.4086 23.1464 17.6136
LP/J m 12.616 1.1786 14.9306 10.3014
MA/MyJ m 11.3633 1.5215 14.3514 8.3753
NOD/ShiLtJ m 10.91 1.1786 13.2246 8.5954
NON/ShiLtJ m 26.6331 1.0337 28.6631 24.6031
NZB/BlNJ m 16.6486 1.4086 19.415 13.8821
NZW/LacJ m 16.028 1.1786 18.3426 13.7134
PL/J m 18.548 1.1786 20.8626 16.2334
RIIIS/J m 19.663 1.1786 21.9776 17.3484
SEA/GnJ m 19.2336 1.1237 21.4405 17.0268
SJL/J m 9.94 2.6353 15.1155 4.7645
SM/J m 12.046 1.1786 14.3606 9.7314
SWR/J m 7.556 1.1786 9.8706 5.2414




  GWAS USING LINEAR MIXED MODELS