Project measure / variable:   HMDPpheno2   LDL_VLDL

ID, description, units MPD:46402   LDL_VLDL   low density lipoprotein (plasma LDL) plus very low density lipoprotein (plasma VLDL)   [mg/dL]  
Data set, strains HMDPpheno2   HMDP w/par   99 strains     sex: m     age: 16wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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HMDPpheno2 - low density lipoprotein (plasma LDL) plus very low density lipoprotein (plasma VLDL)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means22.6   mg/dL
Median of the strain means20.0   mg/dL
SD of the strain means± 13.3
Coefficient of variation (CV)0.587
Min–max range of strain means6.50   –   86.1   mg/dL
Mean sample size per strain6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 97 124624.9619 1284.7934 12.2977 < 0.0001
Residuals 585 61117.3397 104.4741


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 25.4 10.3   10 3.26 0.406 10.0, 43.0 0.21
A/J m 24.6 11.5   8 4.05 0.466 10.0, 38.0 0.15
AKR/J m 25.0 9.85   10 3.12 0.394 9.0, 39.0 0.18
AXB10/PgnJ m 6.6 2.51   5 1.12 0.38 3.0, 10.0 -1.21
AXB12/PgnJ m 10.5 4.97   6 2.03 0.473 6.0, 19.0 -0.91
AXB13/PgnJ m 10.0 3.29   6 1.34 0.329 6.0, 15.0 -0.95
AXB15/PgnJ m 9.33 2.58   6 1.05 0.277 6.0, 13.0 -1.0
AXB19a/PgnJ m 9.8 2.59   5 1.16 0.264 7.0, 12.0 -0.96
AXB19b/PgnJ m 11.1 2.85   8 1.01 0.256 6.0, 14.0 -0.87
AXB19/PgnJ m 10.3 1.97   6 0.803 0.19 7.0, 13.0 -0.93
AXB1/PgnJ m 14.0 2.61   6 1.06 0.186 11.0, 18.0 -0.65
AXB23/PgnJ m 8.33 1.03   6 0.422 0.124 7.0, 10.0 -1.08
AXB24/PgnJ m 9.2 7.53   5 3.37 0.818 1.0, 20.0 -1.01
AXB2/PgnJ m 21.0 6.32   6 2.58 0.301 13.0, 27.0 -0.12
AXB4/PgnJ m 12.5 6.35   6 2.59 0.508 5.0, 20.0 -0.76
AXB5/PgnJ m 8.75 1.71   4 0.854 0.195 7.0, 11.0 -1.04
AXB6/PgnJ m 8.12 3.23   8 1.14 0.397 4.0, 12.0 -1.09
AXB8/PgnJ m 19.0 5.15   5 2.3 0.271 14.0, 27.0 -0.27
B6cC3-1/KccJ m 31.0 6.23   6 2.54 0.201 23.0, 39.0 0.63
BALB/cJ m 18.7 6.62   10 2.09 0.354 9.0, 30.0 -0.29
BTBR T+ Itpr3tf/J m 44.5 8.9   10 2.81 0.2 30.0, 57.0 1.65
BUB/BnJ m 24.4 6.98   9 2.33 0.286 14.0, 37.0 0.14
BXA11/PgnJ m 20.2 7.47   6 3.05 0.37 10.0, 33.0 -0.18
BXA12/PgnJ m 11.2 4.11   4 2.06 0.366 6.0, 15.0 -0.86
BXA13/PgnJ m 17.3 3.39   6 1.38 0.195 12.0, 21.0 -0.4
BXA14/PgnJ m 21.7 7.87   6 3.21 0.363 9.0, 30.0 -0.07
BXA16/PgnJ m 18.3 3.82   7 1.44 0.209 13.0, 25.0 -0.32
BXA1/PgnJ m 11.0 2.83   2   2.0 0.257 9.0, 13.0 -0.87
BXA24/PgnJ m 21.0 1.55   6 0.632 0.0738 18.0, 22.0 -0.12
BXA25/PgnJ m 13.5 4.04   6 1.65 0.299 9.0, 20.0 -0.69
BXA26/PgnJ m 7.5 2.88   6 1.18 0.384 4.0, 11.0 -1.14
BXA2/PgnJ m 13.5 3.02   6 1.23 0.223 9.0, 18.0 -0.69
BXA4/PgnJ m 16.8 3.27   5 1.46 0.195 11.0, 19.0 -0.44
BXA7/PgnJ m 14.5 3.15   6 1.28 0.217 10.0, 19.0 -0.61
BXA8/PgnJ m 11.2 3.54   6 1.45 0.317 5.0, 14.0 -0.86
BXD11/TyJ m 19.0 3.81   5 1.7 0.2 15.0, 24.0 -0.27
BXD12/TyJ m 19.5 6.12   6 2.5 0.314 11.0, 29.0 -0.23
BXD13/TyJ m 13.5 3.45   6 1.41 0.256 9.0, 19.0 -0.69
BXD14/TyJ m 20.0 4.34   6 1.77 0.217 16.0, 28.0 -0.2
BXD15/TyJ m 9.0 4.08   4 2.04 0.454 6.0, 15.0 -1.02
BXD16/TyJ m 19.5 3.11   4 1.55 0.159 16.0, 23.0 -0.23
BXD18/TyJ m 7.0 1.41   2   1.0 0.202 6.0, 8.0 -1.18
BXD19/TyJ m 21.2 4.06   8 1.44 0.191 15.0, 26.0 -0.1
BXD1/TyJ m 14.5 6.45   4 3.23 0.445 9.0, 23.0 -0.61
BXD20/TyJ m 17.0 5.9   6 2.41 0.347 11.0, 27.0 -0.42
BXD21/TyJ m 17.2 6.4   4 3.2 0.371 12.0, 25.0 -0.41
BXD22/TyJ m 15.0 0.0   1   0.0 0.0 15.0, 15.0 -0.57
BXD24/TyJ-Cep290rd16/J m 12.8 5.78   6 2.36 0.45 5.0, 20.0 -0.74
BXD27/TyJ m 42.5 6.14   4 3.07 0.144 38.0, 51.0 1.5
BXD28/TyJ m 36.2 31.4   5 14.1 0.869 17.0, 92.0 1.03
BXD29-Tlr4lps-2J/J m 10.2 5.12   6 2.09 0.503 6.0, 20.0 -0.93
BXD2/TyJ m 31.0 8.76   4 4.38 0.282 23.0, 42.0 0.63
BXD31/TyJ m 27.0 3.37   4 1.68 0.125 25.0, 32.0 0.33
BXD32/TyJ m 21.0 3.37   4 1.68 0.16 16.0, 23.0 -0.12
BXD33/TyJ m 14.3 3.44   6 1.41 0.24 11.0, 19.0 -0.62
BXD34/TyJ m 21.8 7.63   6 3.11 0.349 13.0, 30.0 -0.06
BXD36/TyJ m 21.0 7.7   4 3.85 0.367 14.0, 31.0 -0.12
BXD38/TyJ m 14.8 2.99   4 1.49 0.202 12.0, 19.0 -0.59
BXD39/TyJ m 20.4 4.72   5 2.11 0.231 13.0, 26.0 -0.16
BXD40/TyJ m 11.7 3.93   6 1.61 0.337 6.0, 16.0 -0.82
BXD42/TyJ m 29.3 7.89   6 3.22 0.269 22.0, 44.0 0.51
BXD5/TyJ m 25.8 8.98   6 3.66 0.347 13.0, 36.0 0.24
BXD6/TyJ m 16.8 1.83   6 0.749 0.109 15.0, 19.0 -0.44
BXD8/TyJ m 11.0 5.1   6 2.08 0.464 5.0, 19.0 -0.87
BXD9/TyJ m 26.8 11.4   6 4.66 0.425 12.0, 41.0 0.32
BXH10/TyJ m 21.3 9.22   6 3.77 0.432 8.0, 35.0 -0.1
BXH14/TyJ m 46.2 16.3   9 5.43 0.352 28.0, 83.0 1.78
BXH19/TyJ m 41.1 9.17   17 2.22 0.223 27.0, 59.0 1.4
BXH20/KccJ m 20.5 5.24   8 1.85 0.255 11.0, 30.0 -0.16
BXH22/KccJ m 10.0 3.92   10 1.24 0.392 5.0, 18.0 -0.95
BXH2/TyJ m 20.2 6.5   9 2.17 0.321 13.0, 29.0 -0.18
BXH4/TyJ m 29.1 13.5   11 4.08 0.465 9.0, 52.0 0.49
BXH6/TyJ m 41.4 20.0   10 6.32 0.483 25.0, 85.0 1.42
BXH7/TyJ m 17.4 12.2   10 3.85 0.7 -8.0, 34.0 -0.39
BXH8/TyJ m 25.3 8.6   11 2.59 0.34 11.0, 37.0 0.2
BXH9/TyJ m 57.9 23.4   8 8.28 0.405 24.0, 97.0 2.66
C3H/HeJ m 32.0 10.2   10 3.22 0.319 16.0, 47.0 0.71
C57BL/6J m 19.8 7.37   11 2.22 0.372 9.0, 30.0 -0.21
C57L/J m 36.6 11.7   10 3.72 0.321 14.0, 53.0 1.06
C58/J m 23.9 4.79   10 1.52 0.201 17.0, 31.0 0.1
CBA/J m 26.2 10.1   10 3.2 0.387 10.0, 42.0 0.27
CE/J m 34.4 7.4   9 2.47 0.215 28.0, 49.0 0.89
DBA/2J m 35.4 9.32   10 2.95 0.263 21.0, 51.0 0.97
FVB/NJ m 37.6 7.7   5 3.44 0.205 30.0, 48.0 1.13
I/LnJ m 19.9 8.1   9 2.7 0.407 12.0, 32.0 -0.2
KK/HlJ m 44.1 12.8   8 4.51 0.289 31.0, 70.0 1.62
LG/J m 50.4 11.2   7 4.22 0.221 35.0, 69.0 2.1
LP/J m 22.7 6.58   10 2.08 0.29 8.0, 31.0 0.01
MA/MyJ m 27.2 5.04   6 2.06 0.185 21.0, 35.0 0.35
NOD/ShiLtJ m 41.2 28.9   10 9.14 0.701 5.0, 113.0 1.4
NON/ShiLtJ m 43.5 9.62   11 2.9 0.221 32.0, 58.0 1.58
NZB/BlNJ m 86.1 20.2   7 7.63 0.234 47.0, 105.0 4.79
NZW/LacJ m 46.7 16.2   9 5.4 0.347 15.0, 67.0 1.82
PL/J m 42.2 26.3   8 9.3 0.622 24.0, 89.0 1.48
RIIIS/J m 6.5 3.17   10 1.0 0.488 2.0, 11.0 -1.21
SEA/GnJ m 13.6 5.8   11 1.75 0.425 2.0, 22.0 -0.68
SJL/J m 9.0 2.83   2   2.0 0.314 7.0, 11.0 -1.02
SM/J m 37.8 18.2   10 5.74 0.48 8.0, 57.0 1.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 25.4 3.2322 31.7482 19.0518
A/J m 24.625 3.6138 31.7225 17.5275
AKR/J m 25.0 3.2322 31.3482 18.6518
AXB10/PgnJ m 6.6 4.5711 15.5777 0.0
AXB12/PgnJ m 10.5 4.1728 18.6955 2.3045
AXB13/PgnJ m 10.0 4.1728 18.1955 1.8045
AXB15/PgnJ m 9.3333 4.1728 17.5288 1.1378
AXB19a/PgnJ m 9.8 4.5711 18.7777 0.8223
AXB19b/PgnJ m 11.125 3.6138 18.2225 4.0275
AXB19/PgnJ m 10.3333 4.1728 18.5288 2.1378
AXB1/PgnJ m 14.0 4.1728 22.1955 5.8045
AXB23/PgnJ m 8.3333 4.1728 16.5288 0.1378
AXB24/PgnJ m 9.2 4.5711 18.1777 0.2223
AXB2/PgnJ m 21.0 4.1728 29.1955 12.8045
AXB4/PgnJ m 12.5 4.1728 20.6955 4.3045
AXB5/PgnJ m 8.75 5.1106 18.7874 0.0
AXB6/PgnJ m 8.125 3.6138 15.2225 1.0275
AXB8/PgnJ m 19.0 4.5711 27.9777 10.0223
B6cC3-1/KccJ m 31.0 4.1728 39.1955 22.8045
BALB/cJ m 18.7 3.2322 25.0482 12.3518
BTBR T+ Itpr3tf/J m 44.5 3.2322 50.8482 38.1518
BUB/BnJ m 24.4444 3.4071 31.1361 17.7528
BXA11/PgnJ m 20.1667 4.1728 28.3622 11.9712
BXA12/PgnJ m 11.25 5.1106 21.2874 1.2126
BXA13/PgnJ m 17.3333 4.1728 25.5288 9.1378
BXA14/PgnJ m 21.6667 4.1728 29.8622 13.4712
BXA16/PgnJ m 18.2857 3.8633 25.8733 10.6981
BXA1/PgnJ m 11.0 7.2275 25.195 0.0
BXA24/PgnJ m 21.0 4.1728 29.1955 12.8045
BXA25/PgnJ m 13.5 4.1728 21.6955 5.3045
BXA26/PgnJ m 7.5 4.1728 15.6955 0.0
BXA2/PgnJ m 13.5 4.1728 21.6955 5.3045
BXA4/PgnJ m 16.8 4.5711 25.7777 7.8223
BXA7/PgnJ m 14.5 4.1728 22.6955 6.3045
BXA8/PgnJ m 11.1667 4.1728 19.3622 2.9712
BXD11/TyJ m 19.0 4.5711 27.9777 10.0223
BXD12/TyJ m 19.5 4.1728 27.6955 11.3045
BXD13/TyJ m 13.5 4.1728 21.6955 5.3045
BXD14/TyJ m 20.0 4.1728 28.1955 11.8045
BXD15/TyJ m 9.0 5.1106 19.0374 0.0
BXD16/TyJ m 19.5 5.1106 29.5374 9.4626
BXD18/TyJ m 7.0 7.2275 21.195 0.0
BXD19/TyJ m 21.25 3.6138 28.3475 14.1525
BXD1/TyJ m 14.5 5.1106 24.5374 4.4626
BXD20/TyJ m 17.0 4.1728 25.1955 8.8045
BXD21/TyJ m 17.25 5.1106 27.2874 7.2126
BXD24/TyJ-Cep290rd16/J m 12.8333 4.1728 21.0288 4.6378
BXD27/TyJ m 42.5 5.1106 52.5374 32.4626
BXD28/TyJ m 36.2 4.5711 45.1777 27.2223
BXD29-Tlr4lps-2J/J m 10.1667 4.1728 18.3622 1.9712
BXD2/TyJ m 31.0 5.1106 41.0374 20.9626
BXD31/TyJ m 27.0 5.1106 37.0374 16.9626
BXD32/TyJ m 21.0 5.1106 31.0374 10.9626
BXD33/TyJ m 14.3333 4.1728 22.5288 6.1378
BXD34/TyJ m 21.8333 4.1728 30.0288 13.6378
BXD36/TyJ m 21.0 5.1106 31.0374 10.9626
BXD38/TyJ m 14.75 5.1106 24.7874 4.7126
BXD39/TyJ m 20.4 4.5711 29.3777 11.4223
BXD40/TyJ m 11.6667 4.1728 19.8622 3.4712
BXD42/TyJ m 29.3333 4.1728 37.5288 21.1378
BXD5/TyJ m 25.8333 4.1728 34.0288 17.6378
BXD6/TyJ m 16.8333 4.1728 25.0288 8.6378
BXD8/TyJ m 11.0 4.1728 19.1955 2.8045
BXD9/TyJ m 26.8333 4.1728 35.0288 18.6378
BXH10/TyJ m 21.3333 4.1728 29.5288 13.1378
BXH14/TyJ m 46.2222 3.4071 52.9138 39.5306
BXH19/TyJ m 41.1176 2.479 45.9865 36.2488
BXH20/KccJ m 20.5 3.6138 27.5975 13.4025
BXH22/KccJ m 10.0 3.2322 16.3482 3.6518
BXH2/TyJ m 20.2222 3.4071 26.9138 13.5306
BXH4/TyJ m 29.0909 3.0818 35.1437 23.0381
BXH6/TyJ m 41.4 3.2322 47.7482 35.0518
BXH7/TyJ m 17.4 3.2322 23.7482 11.0518
BXH8/TyJ m 25.2727 3.0818 31.3255 19.2199
BXH9/TyJ m 57.875 3.6138 64.9725 50.7775
C3H/HeJ m 32.0 3.2322 38.3482 25.6518
C57BL/6J m 19.8182 3.0818 25.871 13.7654
C57L/J m 36.6 3.2322 42.9482 30.2518
C58/J m 23.9 3.2322 30.2482 17.5518
CBA/J m 26.2 3.2322 32.5482 19.8518
CE/J m 34.4444 3.4071 41.1361 27.7528
DBA/2J m 35.4 3.2322 41.7482 29.0518
FVB/NJ m 37.6 4.5711 46.5777 28.6223
I/LnJ m 19.8889 3.4071 26.5805 13.1973
KK/HlJ m 44.125 3.6138 51.2225 37.0275
LG/J m 50.4286 3.8633 58.0161 42.841
LP/J m 22.7 3.2322 29.0482 16.3518
MA/MyJ m 27.1667 4.1728 35.3622 18.9712
NOD/ShiLtJ m 41.2 3.2322 47.5482 34.8518
NON/ShiLtJ m 43.4545 3.0818 49.5073 37.4018
NZB/BlNJ m 86.1429 3.8633 93.7304 78.5553
NZW/LacJ m 46.6667 3.4071 53.3583 39.9751
PL/J m 42.25 3.6138 49.3475 35.1525
RIIIS/J m 6.5 3.2322 12.8482 0.1518
SEA/GnJ m 13.6364 3.0818 19.6892 7.5836
SJL/J m 9.0 7.2275 23.195 0.0
SM/J m 37.8 3.2322 44.1482 31.4518
SWR/J m 22.2222 3.4071 28.9138 15.5306




  GWAS USING LINEAR MIXED MODELS