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Project measure / variable:   HMDPpheno2   HDL

ID, description, units MPD:46401   HDL   HDL cholesterol (plasma HDL)   [mg/dL]  
Data set, strains HMDPpheno2   HMDP w/par   99 strains     sex: m     age: 16wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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HMDPpheno2 - HDL cholesterol (plasma HDL)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means93.4   mg/dL
Median of the strain means89.1   mg/dL
SD of the strain means± 25.7
Coefficient of variation (CV)0.275
Min–max range of strain means57.5   –   181   mg/dL
Mean sample size per strain6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 97 468004.4891 4824.7885 28.9059 < 0.0001
Residuals 586 97811.2477 166.9134


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 133.0 17.8   10 5.64 0.134 103.0, 154.0 1.54
A/J m 74.0 10.2   8 3.61 0.138 56.0, 91.0 -0.76
AKR/J m 89.3 8.25   10 2.61 0.0924 79.0, 107.0 -0.16
AXB10/PgnJ m 60.6 3.97   5 1.78 0.0656 54.0, 64.0 -1.28
AXB12/PgnJ m 91.0 6.48   6 2.65 0.0712 79.0, 98.0 -0.09
AXB13/PgnJ m 72.5 8.8   6 3.59 0.121 64.0, 87.0 -0.81
AXB15/PgnJ m 76.5 5.32   6 2.17 0.0695 71.0, 84.0 -0.66
AXB19a/PgnJ m 70.4 6.19   5 2.77 0.0879 65.0, 80.0 -0.89
AXB19b/PgnJ m 58.9 8.37   8 2.96 0.142 47.0, 73.0 -1.34
AXB19/PgnJ m 57.5 6.6   6 2.69 0.115 47.0, 64.0 -1.4
AXB1/PgnJ m 86.8 15.6   6 6.35 0.179 67.0, 100.0 -0.26
AXB23/PgnJ m 66.7 7.53   6 3.07 0.113 55.0, 74.0 -1.04
AXB24/PgnJ m 75.2 13.9   5 6.21 0.185 60.0, 90.0 -0.71
AXB2/PgnJ m 91.3 6.92   6 2.82 0.0758 78.0, 98.0 -0.08
AXB4/PgnJ m 70.8 7.65   6 3.12 0.108 63.0, 80.0 -0.88
AXB5/PgnJ m 79.0 2.58   4 1.29 0.0327 76.0, 82.0 -0.56
AXB6/PgnJ m 81.8 5.85   8 2.07 0.0716 76.0, 90.0 -0.45
AXB8/PgnJ m 89.6 3.44   5 1.54 0.0383 84.0, 93.0 -0.15
B6cC3-1/KccJ m 79.8 4.92   6 2.01 0.0616 74.0, 87.0 -0.53
BALB/cJ m 96.9 6.3   10 1.99 0.065 89.0, 108.0 0.14
BTBR T+ Itpr3tf/J m 104.0 8.03   10 2.54 0.0769 94.0, 116.0 0.41
BUB/BnJ m 106.0 11.9   9 3.96 0.112 78.0, 119.0 0.49
BXA11/PgnJ m 92.0 4.98   6 2.03 0.0541 83.0, 97.0 -0.06
BXA12/PgnJ m 74.2 5.32   4 2.66 0.0716 70.0, 81.0 -0.75
BXA13/PgnJ m 89.8 9.75   6 3.98 0.108 77.0, 106.0 -0.14
BXA14/PgnJ m 98.3 14.9   6 6.08 0.151 73.0, 118.0 0.19
BXA16/PgnJ m 92.6 5.38   7 2.03 0.0581 85.0, 102.0 -0.03
BXA1/PgnJ m 77.5 12.0   2   8.5 0.155 69.0, 86.0 -0.62
BXA24/PgnJ m 105.0 8.02   6 3.27 0.0766 95.0, 119.0 0.45
BXA25/PgnJ m 74.3 4.63   6 1.89 0.0623 70.0, 83.0 -0.74
BXA26/PgnJ m 58.3 5.72   6 2.33 0.098 50.0, 67.0 -1.37
BXA2/PgnJ m 77.7 13.3   6 5.42 0.171 52.0, 90.0 -0.61
BXA4/PgnJ m 101.0 8.56   5 3.83 0.0851 89.0, 110.0 0.29
BXA7/PgnJ m 87.3 7.5   6 3.06 0.0859 81.0, 100.0 -0.24
BXA8/PgnJ m 85.7 4.97   6 2.03 0.058 82.0, 95.0 -0.3
BXD11/TyJ m 88.0 11.5   5 5.13 0.13 75.0, 103.0 -0.21
BXD12/TyJ m 87.8 15.3   6 6.26 0.175 69.0, 105.0 -0.22
BXD13/TyJ m 66.0 5.83   6 2.38 0.0883 56.0, 74.0 -1.07
BXD14/TyJ m 107.0 8.06   6 3.29 0.0752 98.0, 118.0 0.53
BXD15/TyJ m 62.5 4.2   4 2.1 0.0673 58.0, 67.0 -1.2
BXD16/TyJ m 103.0 3.95   4 1.97 0.0384 97.0, 106.0 0.37
BXD18/TyJ m 62.5 3.54   2   2.5 0.0566 60.0, 65.0 -1.2
BXD19/TyJ m 86.2 3.62   8 1.28 0.0419 81.0, 93.0 -0.28
BXD1/TyJ m 89.2 4.11   4 2.06 0.0461 84.0, 94.0 -0.16
BXD20/TyJ m 81.0 14.7   6 5.99 0.181 60.0, 96.0 -0.48
BXD21/TyJ m 71.5 8.19   4 4.09 0.114 60.0, 79.0 -0.85
BXD22/TyJ m 103.0 0.0   1   0.0 0.0 103.0, 103.0 0.37
BXD24/TyJ-Cep290rd16/J m 85.0 7.4   6 3.02 0.0871 73.0, 93.0 -0.33
BXD27/TyJ m 81.5 11.2   4 5.61 0.138 68.0, 95.0 -0.46
BXD28/TyJ m 74.6 12.1   5 5.43 0.163 60.0, 86.0 -0.73
BXD29-Tlr4lps-2J/J m 71.8 7.91   6 3.23 0.11 63.0, 81.0 -0.84
BXD2/TyJ m 93.5 7.55   4 3.77 0.0807 88.0, 104.0 0.0
BXD31/TyJ m 89.8 4.11   4 2.06 0.0458 86.0, 95.0 -0.14
BXD32/TyJ m 94.5 11.0   4 5.48 0.116 79.0, 104.0 0.04
BXD33/TyJ m 75.5 11.6   6 4.73 0.153 62.0, 96.0 -0.7
BXD34/TyJ m 81.0 2.37   6 0.966 0.0292 78.0, 83.0 -0.48
BXD36/TyJ m 96.0 15.4   4 7.69 0.16 79.0, 110.0 0.1
BXD38/TyJ m 70.2 1.71   4 0.854 0.0243 68.0, 72.0 -0.9
BXD39/TyJ m 85.4 6.66   5 2.98 0.0779 78.0, 95.0 -0.31
BXD40/TyJ m 74.2 3.82   6 1.56 0.0515 69.0, 79.0 -0.75
BXD42/TyJ m 104.0 10.0   6 4.09 0.0966 93.0, 120.0 0.41
BXD5/TyJ m 112.0 3.99   6 1.63 0.0358 106.0, 116.0 0.72
BXD6/TyJ m 68.3 5.13   6 2.09 0.075 64.0, 77.0 -0.98
BXD8/TyJ m 73.8 9.06   6 3.7 0.123 62.0, 86.0 -0.76
BXD9/TyJ m 89.0 3.58   6 1.46 0.0402 85.0, 94.0 -0.17
BXH10/TyJ m 86.0 10.0   6 4.1 0.117 67.0, 97.0 -0.29
BXH14/TyJ m 151.0 12.8   9 4.25 0.0846 129.0, 166.0 2.24
BXH19/TyJ m 70.7 10.9   17 2.65 0.154 55.0, 96.0 -0.88
BXH20/KccJ m 109.0 12.1   8 4.26 0.11 94.0, 124.0 0.61
BXH22/KccJ m 95.9 9.18   10 2.9 0.0958 81.0, 109.0 0.1
BXH2/TyJ m 80.1 6.66   9 2.22 0.0831 70.0, 92.0 -0.52
BXH4/TyJ m 106.0 28.9   11 8.7 0.273 82.0, 157.0 0.49
BXH6/TyJ m 127.0 19.1   10 6.05 0.151 100.0, 146.0 1.3
BXH7/TyJ m 81.1 11.9   10 3.77 0.147 53.0, 93.0 -0.48
BXH8/TyJ m 94.7 10.3   11 3.1 0.109 74.0, 106.0 0.05
BXH9/TyJ m 148.0 33.0   8 11.7 0.223 79.0, 183.0 2.12
C3H/HeJ m 137.0 15.6   10 4.94 0.114 116.0, 163.0 1.69
C57BL/6J m 77.6 10.3   11 3.12 0.133 60.0, 91.0 -0.62
C57L/J m 76.1 14.4   10 4.56 0.19 44.0, 101.0 -0.67
C58/J m 89.1 9.36   10 2.96 0.105 76.0, 104.0 -0.17
CBA/J m 93.2 6.89   10 2.18 0.074 77.0, 101.0 -0.01
CE/J m 113.0 13.9   9 4.65 0.124 93.0, 136.0 0.76
DBA/2J m 99.5 6.24   10 1.97 0.0627 91.0, 109.0 0.24
FVB/NJ m 164.0 28.7   5 12.8 0.175 118.0, 190.0 2.74
I/LnJ m 95.7 21.5   9 7.17 0.225 55.0, 127.0 0.09
KK/HlJ m 158.0 25.3   8 8.93 0.16 126.0, 211.0 2.51
LG/J m 181.0 13.0   7 4.91 0.0718 160.0, 197.0 3.4
LP/J m 124.0 10.6   10 3.34 0.0853 109.0, 146.0 1.19
MA/MyJ m 130.0 22.6   6 9.22 0.174 105.0, 155.0 1.42
NOD/ShiLtJ m 112.0 22.6   10 7.13 0.202 77.0, 164.0 0.72
NON/ShiLtJ m 115.0 11.9   11 3.58 0.104 96.0, 133.0 0.84
NZB/BlNJ m 181.0 18.6   7 7.03 0.102 159.0, 199.0 3.4
NZW/LacJ m 164.0 23.8   10 7.52 0.145 131.0, 216.0 2.74
PL/J m 102.0 10.1   8 3.56 0.0992 89.0, 117.0 0.33
RIIIS/J m 75.3 8.11   10 2.56 0.108 61.0, 87.0 -0.7
SEA/GnJ m 98.2 23.3   11 7.02 0.237 60.0, 133.0 0.19
SJL/J m 72.5 10.6   2   7.5 0.146 65.0, 80.0 -0.81
SM/J m 97.3 7.69   10 2.43 0.079 87.0, 110.0 0.15
SWR/J m 91.0 13.3   9 4.43 0.146 74.0, 118.0 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 133.3 4.0855 141.324 125.276
A/J m 74.0 4.5677 82.9711 65.0289
AKR/J m 89.3 4.0855 97.324 81.276
AXB10/PgnJ m 60.6 5.7778 71.9477 49.2523
AXB12/PgnJ m 91.0 5.2744 101.359 80.641
AXB13/PgnJ m 72.5 5.2744 82.859 62.141
AXB15/PgnJ m 76.5 5.2744 86.859 66.141
AXB19a/PgnJ m 70.4 5.7778 81.7477 59.0523
AXB19b/PgnJ m 58.875 4.5677 67.8461 49.9039
AXB19/PgnJ m 57.5 5.2744 67.859 47.141
AXB1/PgnJ m 86.8333 5.2744 97.1923 76.4744
AXB23/PgnJ m 66.6667 5.2744 77.0256 56.3077
AXB24/PgnJ m 75.2 5.7778 86.5477 63.8523
AXB2/PgnJ m 91.3333 5.2744 101.6923 80.9744
AXB4/PgnJ m 70.8333 5.2744 81.1923 60.4744
AXB5/PgnJ m 79.0 6.4597 91.6871 66.3129
AXB6/PgnJ m 81.75 4.5677 90.7211 72.7789
AXB8/PgnJ m 89.6 5.7778 100.9477 78.2523
B6cC3-1/KccJ m 79.8333 5.2744 90.1923 69.4744
BALB/cJ m 96.9 4.0855 104.924 88.876
BTBR T+ Itpr3tf/J m 104.4 4.0855 112.424 96.376
BUB/BnJ m 106.3333 4.3065 114.7914 97.8753
BXA11/PgnJ m 92.0 5.2744 102.359 81.641
BXA12/PgnJ m 74.25 6.4597 86.9371 61.5629
BXA13/PgnJ m 89.8333 5.2744 100.1923 79.4744
BXA14/PgnJ m 98.3333 5.2744 108.6923 87.9744
BXA16/PgnJ m 92.5714 4.8831 102.162 82.9809
BXA1/PgnJ m 77.5 9.1355 95.4422 59.5578
BXA24/PgnJ m 104.6667 5.2744 115.0256 94.3077
BXA25/PgnJ m 74.3333 5.2744 84.6923 63.9744
BXA26/PgnJ m 58.3333 5.2744 68.6923 47.9744
BXA2/PgnJ m 77.6667 5.2744 88.0256 67.3077
BXA4/PgnJ m 100.6 5.7778 111.9477 89.2523
BXA7/PgnJ m 87.3333 5.2744 97.6923 76.9744
BXA8/PgnJ m 85.6667 5.2744 96.0256 75.3077
BXD11/TyJ m 88.0 5.7778 99.3477 76.6523
BXD12/TyJ m 87.8333 5.2744 98.1923 77.4744
BXD13/TyJ m 66.0 5.2744 76.359 55.641
BXD14/TyJ m 107.1667 5.2744 117.5256 96.8077
BXD15/TyJ m 62.5 6.4597 75.1871 49.8129
BXD16/TyJ m 102.75 6.4597 115.4371 90.0629
BXD18/TyJ m 62.5 9.1355 80.4422 44.5578
BXD19/TyJ m 86.25 4.5677 95.2211 77.2789
BXD1/TyJ m 89.25 6.4597 101.9371 76.5629
BXD20/TyJ m 81.0 5.2744 91.359 70.641
BXD21/TyJ m 71.5 6.4597 84.1871 58.8129
BXD24/TyJ-Cep290rd16/J m 85.0 5.2744 95.359 74.641
BXD27/TyJ m 81.5 6.4597 94.1871 68.8129
BXD28/TyJ m 74.6 5.7778 85.9477 63.2523
BXD29-Tlr4lps-2J/J m 71.8333 5.2744 82.1923 61.4744
BXD2/TyJ m 93.5 6.4597 106.1871 80.8129
BXD31/TyJ m 89.75 6.4597 102.4371 77.0629
BXD32/TyJ m 94.5 6.4597 107.1871 81.8129
BXD33/TyJ m 75.5 5.2744 85.859 65.141
BXD34/TyJ m 81.0 5.2744 91.359 70.641
BXD36/TyJ m 96.0 6.4597 108.6871 83.3129
BXD38/TyJ m 70.25 6.4597 82.9371 57.5629
BXD39/TyJ m 85.4 5.7778 96.7477 74.0523
BXD40/TyJ m 74.1667 5.2744 84.5256 63.8077
BXD42/TyJ m 103.8333 5.2744 114.1923 93.4744
BXD5/TyJ m 111.5 5.2744 121.859 101.141
BXD6/TyJ m 68.3333 5.2744 78.6923 57.9744
BXD8/TyJ m 73.8333 5.2744 84.1923 63.4744
BXD9/TyJ m 89.0 5.2744 99.359 78.641
BXH10/TyJ m 86.0 5.2744 96.359 75.641
BXH14/TyJ m 150.7778 4.3065 159.2358 142.3197
BXH19/TyJ m 70.7059 3.1334 76.86 64.5517
BXH20/KccJ m 109.125 4.5677 118.0961 100.1539
BXH22/KccJ m 95.9 4.0855 103.924 87.876
BXH2/TyJ m 80.1111 4.3065 88.5692 71.6531
BXH4/TyJ m 105.7273 3.8954 113.3779 98.0767
BXH6/TyJ m 126.7 4.0855 134.724 118.676
BXH7/TyJ m 81.1 4.0855 89.124 73.076
BXH8/TyJ m 94.7273 3.8954 102.3779 87.0767
BXH9/TyJ m 148.25 4.5677 157.2211 139.2789
C3H/HeJ m 137.1 4.0855 145.124 129.076
C57BL/6J m 77.6364 3.8954 85.287 69.9858
C57L/J m 76.1 4.0855 84.124 68.076
C58/J m 89.1 4.0855 97.124 81.076
CBA/J m 93.2 4.0855 101.224 85.176
CE/J m 112.5556 4.3065 121.0136 104.0975
DBA/2J m 99.5 4.0855 107.524 91.476
FVB/NJ m 164.0 5.7778 175.3477 152.6523
I/LnJ m 95.6667 4.3065 104.1247 87.2086
KK/HlJ m 157.875 4.5677 166.8461 148.9039
LG/J m 180.8571 4.8831 190.4477 171.2666
LP/J m 123.7 4.0855 131.724 115.676
MA/MyJ m 130.1667 5.2744 140.5256 119.8077
NOD/ShiLtJ m 111.9 4.0855 119.924 103.876
NON/ShiLtJ m 114.6364 3.8954 122.287 106.9858
NZB/BlNJ m 181.4286 4.8831 191.0191 171.838
NZW/LacJ m 164.1 4.0855 172.124 156.076
PL/J m 101.5 4.5677 110.4711 92.5289
RIIIS/J m 75.3 4.0855 83.324 67.276
SEA/GnJ m 98.1818 3.8954 105.8324 90.5312
SJL/J m 72.5 9.1355 90.4422 54.5578
SM/J m 97.3 4.0855 105.324 89.276
SWR/J m 91.0 4.3065 99.4581 82.5419




  GWAS USING LINEAR MIXED MODELS