Project measure / variable:   Tarantino1   dist_cocaine

ID, description, units MPD:45912   dist_cocaine   distance traveled, 30 min test   [cm]  treated (day 3)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - distance traveled, 30 min test treated (day 3)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means18347   cm
Median of the strain means15993   cm
SD of the strain means± 10476
Coefficient of variation (CV)0.571
Min–max range of strain means2726   –   51404   cm
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 82769475463.9983 1881124442.3636 25.0808 < 0.0001
Residuals 793 59476946684.514 75002454.8355


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 3449.0 5254.0   20 1175.0 1.52 -1.42
A/J m 3538.0 5097.0   23 1063.0 1.44 -1.41
AKR/J m 21085.0 10605.0   20 2371.0 0.503 2457.0, 38799.0 0.26
BALB/cByJ m 7897.0 6557.0   18 1545.0 0.83 420.0, 24929.0 -1.0
BTBR T+ Itpr3tf/J m 8739.0 8321.0   19 1909.0 0.952 326.0, 25301.0 -0.92
BUB/BnJ m 15993.0 6899.0   17 1673.0 0.431 1789.0, 31043.0 -0.22
C3H/HeJ m 15088.0 6833.0   20 1528.0 0.453 3819.0, 27996.0 -0.31
C57BL/6J m 21198.0 7697.0   52 1067.0 0.363 5781.0, 37418.0 0.27
C57BLKS/J m 14007.0 8867.0   20 1983.0 0.633 34.3, 32334.0 -0.41
C57BR/cdJ m 51404.0 8258.0   16 2065.0 0.161 37893.0, 71665.0 3.16
C57L/J m 40995.0 8213.0   18 1936.0 0.2 26919.0, 57818.0 2.16
C58/J m 36865.0 5387.0   16 1347.0 0.146 27896.0, 46182.0 1.77
CBA/J m 12587.0 6546.0   20 1464.0 0.52 1674.0, 25808.0 -0.55
CE/J m 22561.0 6432.0   18 1516.0 0.285 10869.0, 35362.0 0.4
CZECHII/EiJ m 18549.0 15133.0   18 3567.0 0.816 2792.0, 54592.0 0.02
DBA/2J m 15123.0 11562.0   18 2725.0 0.765 27.6, 39804.0 -0.31
DDY/JclSidSeyFrkJ m 24508.0 9790.0   16 2447.0 0.399 8061.0, 39095.0 0.59
FVB/NJ m 8604.0 5830.0   20 1304.0 0.678 336.0, 21110.0 -0.93
I/LnJ m 35812.0 6520.0   15 1684.0 0.182 25775.0, 48596.0 1.67
KK/HlJ m 15937.0 7061.0   15 1823.0 0.443 4923.0, 25660.0 -0.23
LG/J m 2726.0 2835.0   19 650.0 1.04 13.0, 8446.0 -1.49
LP/J m 3821.0 4127.0   20 923.0 1.08 -1.39
MA/MyJ m 15981.0 8894.0   16 2224.0 0.557 408.0, 29173.0 -0.23
MOLF/EiJ m 20155.0 13239.0   16 3310.0 0.657 1915.0, 49706.0 0.17
MRL/MpJ m 15230.0 7271.0   19 1668.0 0.477 968.0, 35638.0 -0.3
MSM/MsJ m 24571.0 16272.0   18 3835.0 0.662 1020.0, 53950.0 0.59
NOD/ShiLtJ m 22811.0 4859.0   19 1115.0 0.213 12715.0, 34473.0 0.43
NON/ShiLtJ m 19758.0 8467.0   20 1893.0 0.429 7524.0, 32151.0 0.13
NOR/LtJ m 18302.0 6894.0   20 1542.0 0.377 2538.0, 27964.0 0.0
NZB/BlNJ m 19101.0 10211.0   18 2407.0 0.535 3422.0, 35059.0 0.07
NZO/HlLtJ m 8846.0 5386.0   16 1347.0 0.609 1848.0, 18056.0 -0.91
NZW/LacJ m 7930.0 4541.0   19 1042.0 0.573 169.0, 16188.0 -0.99
PERA/EiJ m 10396.0 5505.0   15 1421.0 0.53 5391.0, 24419.0 -0.76
P/J m 39482.0 3612.0   12 1043.0 0.0915 33224.0, 44513.0 2.02
PL/J m 26966.0 12120.0   19 2781.0 0.449 6710.0, 47429.0 0.82
PWD/PhJ m 26464.0 16504.0   15 4261.0 0.624 6908.0, 56996.0 0.77
RIIIS/J m 17392.0 9402.0   15 2428.0 0.541 6240.0, 31063.0 -0.09
SEA/GnJ m 21236.0 8374.0   15 2162.0 0.394 1302.0, 34658.0 0.28
SJL/J m 12151.0 10057.0   24 2053.0 0.828 681.0, 32300.0 -0.59
SKIVE/EiJ m 29628.0 14330.0   18 3378.0 0.484 10734.0, 55021.0 1.08
SM/J m 15316.0 7381.0   19 1693.0 0.482 5657.0, 37123.0 -0.29
SWR/J m 16511.0 5541.0   17 1344.0 0.336 5640.0, 26749.0 -0.18
TALLYHO/JngJ m 11296.0 6371.0   16 1593.0 0.564 2794.0, 21978.0 -0.67
WSB/EiJ m 12925.0 10938.0   17 2653.0 0.846 445.0, 35286.0 -0.52
ZALENDE/EiJ m 12697.0 4843.0   17 1175.0 0.381 6205.0, 23266.0 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 3449.19 1936.5234 7250.5079 0.0
A/J m 3538.1478 1805.8173 7082.895 0.0
AKR/J m 21084.85 1936.5234 24886.1679 17283.5321
BALB/cByJ m 7897.1667 2041.2749 11904.1075 3890.2258
BTBR T+ Itpr3tf/J m 8739.1579 1986.8311 12639.2278 4839.088
BUB/BnJ m 15992.8824 2100.4545 20115.9905 11869.7742
C3H/HeJ m 15088.4 1936.5234 18889.7179 11287.0821
C57BL/6J m 21197.5192 1200.9808 23554.9965 18840.042
C57BLKS/J m 14006.665 1936.5234 17807.9829 10205.3471
C57BR/cdJ m 51403.5 2165.0989 55653.5026 47153.4974
C57L/J m 40995.3333 2041.2749 45002.2742 36988.3925
C58/J m 36865.375 2165.0989 41115.3776 32615.3724
CBA/J m 12586.75 1936.5234 16388.0679 8785.4321
CE/J m 22561.1111 2041.2749 26568.052 18554.1702
CZECHII/EiJ m 18549.1667 2041.2749 22556.1075 14542.2258
DBA/2J m 15122.8111 2041.2749 19129.752 11115.8702
DDY/JclSidSeyFrkJ m 24507.625 2165.0989 28757.6276 20257.6224
FVB/NJ m 8603.5 1936.5234 12404.8179 4802.1821
I/LnJ m 35811.8 2236.1046 40201.1838 31422.4162
KK/HlJ m 15936.9333 2236.1046 20326.3171 11547.5495
LG/J m 2725.9947 1986.8311 6626.0646 0.0
LP/J m 3821.1 1936.5234 7622.4179 19.7821
MA/MyJ m 15981.4375 2165.0989 20231.4401 11731.4349
MOLF/EiJ m 20154.5625 2165.0989 24404.5651 15904.5599
MRL/MpJ m 15229.9474 1986.8311 19130.0172 11329.8775
MSM/MsJ m 24571.3333 2041.2749 28578.2742 20564.3925
NOD/ShiLtJ m 22811.0526 1986.8311 26711.1225 18910.9828
NON/ShiLtJ m 19758.25 1936.5234 23559.5679 15956.9321
NOR/LtJ m 18302.3 1936.5234 22103.6179 14500.9821
NZB/BlNJ m 19100.8333 2041.2749 23107.7742 15093.8925
NZO/HlLtJ m 8846.5 2165.0989 13096.5026 4596.4974
NZW/LacJ m 7929.7368 1986.8311 11829.8067 4029.667
PERA/EiJ m 10396.2 2236.1046 14785.5838 6006.8162
P/J m 39481.8333 2500.0409 44389.3136 34574.353
PL/J m 26966.4211 1986.8311 30866.4909 23066.3512
PWD/PhJ m 26464.1333 2236.1046 30853.5171 22074.7495
RIIIS/J m 17392.2667 2236.1046 21781.6505 13002.8829
SEA/GnJ m 21236.0667 2236.1046 25625.4505 16846.6829
SJL/J m 12150.9583 1767.7959 15621.0709 8680.8457
SKIVE/EiJ m 29628.0 2041.2749 33634.9409 25621.0591
SM/J m 15316.0 1986.8311 19216.0699 11415.9301
SWR/J m 16511.1765 2100.4545 20634.2846 12388.0683
TALLYHO/JngJ m 11296.0 2165.0989 15546.0026 7045.9974
WSB/EiJ m 12924.7059 2100.4545 17047.814 8801.5977
ZALENDE/EiJ m 12696.6471 2100.4545 16819.7552 8573.5389




  GWAS USING LINEAR MIXED MODELS