Project measure / variable:   Tarantino1   dist_ctrl

ID, description, units MPD:45911   dist_ctrl   distance traveled, 30 min test   [cm]  baseline (day 2)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - distance traveled, 30 min test baseline (day 2)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means4838   cm
Median of the strain means4724   cm
SD of the strain means± 2197
Coefficient of variation (CV)0.454
Min–max range of strain means820   –   10405   cm
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 3823308445.9642 86893373.7719 36.611 < 0.0001
Residuals 795 1886869661.687 2373420.9581


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 820.0 1030.0   20 230.0 1.26 -1.83
A/J m 1201.0 961.0   23 200.0 0.8 58.1, 3094.0 -1.65
AKR/J m 6186.0 1411.0   20 316.0 0.228 3662.0, 9826.0 0.61
BALB/cByJ m 5331.0 1750.0   18 412.0 0.328 1786.0, 8463.0 0.22
BTBR T+ Itpr3tf/J m 3058.0 1324.0   19 304.0 0.433 1178.0, 5728.0 -0.81
BUB/BnJ m 6733.0 1717.0   17 416.0 0.255 4376.0, 11090.0 0.86
C3H/HeJ m 2587.0 647.0   20 145.0 0.25 1173.0, 4087.0 -1.02
C57BL/6J m 4724.0 1541.0   52 214.0 0.326 402.0, 8950.0 -0.05
C57BLKS/J m 2181.0 686.0   20 153.0 0.314 961.0, 3515.0 -1.21
C57BR/cdJ m 10405.0 2871.0   16 718.0 0.276 6610.0, 16098.0 2.53
C57L/J m 7829.0 2288.0   18 539.0 0.292 4173.0, 13785.0 1.36
C58/J m 8457.0 2209.0   16 552.0 0.261 4765.0, 13322.0 1.65
CBA/J m 2888.0 856.0   20 191.0 0.296 1574.0, 5520.0 -0.89
CE/J m 7242.0 1654.0   18 390.0 0.228 4259.0, 11023.0 1.09
CZECHII/EiJ m 3533.0 1351.0   18 319.0 0.383 1556.0, 6184.0 -0.59
DBA/2J m 5023.0 1577.0   18 372.0 0.314 66.3, 6993.0 0.08
DDY/JclSidSeyFrkJ m 3704.0 996.0   16 249.0 0.269 1890.0, 5321.0 -0.52
FVB/NJ m 4647.0 1744.0   20 390.0 0.375 914.0, 7561.0 -0.09
I/LnJ m 7295.0 1952.0   15 504.0 0.268 4564.0, 10762.0 1.12
KK/HlJ m 4786.0 1720.0   15 444.0 0.359 2123.0, 7933.0 -0.02
LG/J m 2897.0 1362.0   19 312.0 0.47 250.0, 5376.0 -0.88
LP/J m 1469.0 1111.0   20 248.0 0.756 -1.53
MA/MyJ m 6629.0 2324.0   16 581.0 0.351 2087.0, 11443.0 0.82
MOLF/EiJ m 4496.0 1349.0   16 337.0 0.3 2436.0, 6879.0 -0.16
MRL/MpJ m 5607.0 1979.0   19 454.0 0.353 3650.0, 12779.0 0.35
MSM/MsJ m 4845.0 1693.0   18 399.0 0.349 1856.0, 7534.0 0.0
NOD/ShiLtJ m 8397.0 2177.0   19 499.0 0.259 4738.0, 13029.0 1.62
NON/ShiLtJ m 4641.0 1169.0   20 261.0 0.252 2736.0, 6608.0 -0.09
NOR/LtJ m 7429.0 2129.0   20 476.0 0.287 4338.0, 12627.0 1.18
NZB/BlNJ m 3659.0 951.0   18 224.0 0.26 2276.0, 5686.0 -0.54
NZO/HlLtJ m 1787.0 1043.0   16 261.0 0.584 785.0, 4325.0 -1.39
NZW/LacJ m 3251.0 1464.0   19 336.0 0.45 763.0, 7040.0 -0.72
PERA/EiJ m 2018.0 554.0   15 143.0 0.275 975.0, 3145.0 -1.28
P/J m 5645.0 2152.0   12 621.0 0.381 2014.0, 9283.0 0.37
PL/J m 5535.0 1177.0   19 270.0 0.213 3904.0, 8030.0 0.32
PWD/PhJ m 2539.0 959.0   15 248.0 0.378 1223.0, 4507.0 -1.05
RIIIS/J m 7731.0 1460.0   15 377.0 0.189 5522.0, 10805.0 1.32
SEA/GnJ m 5865.0 1198.0   16 300.0 0.204 2721.0, 7277.0 0.47
SJL/J m 3161.0 1499.0   24 306.0 0.474 1318.0, 7105.0 -0.76
SKIVE/EiJ m 6454.0 1695.0   19 389.0 0.263 3496.0, 8963.0 0.74
SM/J m 7324.0 1105.0   19 253.0 0.151 5837.0, 9490.0 1.13
SWR/J m 4521.0 700.0   17 170.0 0.155 3378.0, 6088.0 -0.14
TALLYHO/JngJ m 3262.0 1001.0   16 250.0 0.307 1645.0, 5429.0 -0.72
WSB/EiJ m 4349.0 2313.0   17 561.0 0.532 924.0, 8890.0 -0.22
ZALENDE/EiJ m 5550.0 1189.0   17 288.0 0.214 3821.0, 8747.0 0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 820.23 344.4866 1496.4409 144.0191
A/J m 1201.2478 321.2355 1831.8177 570.6779
AKR/J m 6186.15 344.4866 6862.3609 5509.9391
BALB/cByJ m 5330.9444 363.1208 6043.7333 4618.1556
BTBR T+ Itpr3tf/J m 3058.0526 353.4358 3751.8304 2364.2749
BUB/BnJ m 6733.4118 373.6482 7466.8655 5999.9581
C3H/HeJ m 2587.25 344.4866 3263.4609 1911.0391
C57BL/6J m 4723.6538 213.6415 5143.022 4304.2856
C57BLKS/J m 2181.1 344.4866 2857.3109 1504.8891
C57BR/cdJ m 10404.8125 385.1478 11160.8393 9648.7857
C57L/J m 7828.8333 363.1208 8541.6222 7116.0445
C58/J m 8456.875 385.1478 9212.9018 7700.8482
CBA/J m 2888.05 344.4866 3564.2609 2211.8391
CE/J m 7242.4444 363.1208 7955.2333 6529.6556
CZECHII/EiJ m 3533.0556 363.1208 4245.8444 2820.2667
DBA/2J m 5022.6278 363.1208 5735.4167 4309.8389
DDY/JclSidSeyFrkJ m 3704.375 385.1478 4460.4018 2948.3482
FVB/NJ m 4647.45 344.4866 5323.6609 3971.2391
I/LnJ m 7294.5333 397.7789 8075.3544 6513.7122
KK/HlJ m 4786.4667 397.7789 5567.2878 4005.6456
LG/J m 2896.5263 353.4358 3590.3041 2202.7486
LP/J m 1469.45 344.4866 2145.6609 793.2391
MA/MyJ m 6628.6875 385.1478 7384.7143 5872.6607
MOLF/EiJ m 4495.5 385.1478 5251.5268 3739.4732
MRL/MpJ m 5606.6316 353.4358 6300.4093 4912.8538
MSM/MsJ m 4845.1667 363.1208 5557.9555 4132.3778
NOD/ShiLtJ m 8396.6316 353.4358 9090.4093 7702.8538
NON/ShiLtJ m 4640.75 344.4866 5316.9609 3964.5391
NOR/LtJ m 7428.65 344.4866 8104.8609 6752.4391
NZB/BlNJ m 3658.8333 363.1208 4371.6222 2946.0445
NZO/HlLtJ m 1786.8125 385.1478 2542.8393 1030.7857
NZW/LacJ m 3250.8947 353.4358 3944.6725 2557.117
PERA/EiJ m 2018.3333 397.7789 2799.1544 1237.5122
P/J m 5644.8333 444.7303 6517.8179 4771.8488
PL/J m 5535.0526 353.4358 6228.8304 4841.2749
PWD/PhJ m 2538.5333 397.7789 3319.3544 1757.7122
RIIIS/J m 7731.0667 397.7789 8511.8878 6950.2456
SEA/GnJ m 5865.375 385.1478 6621.4018 5109.3482
SJL/J m 3161.2083 314.4718 3778.5016 2543.9151
SKIVE/EiJ m 6454.2105 353.4358 7147.9883 5760.4328
SM/J m 7324.4737 353.4358 8018.2514 6630.6959
SWR/J m 4521.4706 373.6482 5254.9243 3788.0169
TALLYHO/JngJ m 3262.4375 385.1478 4018.4643 2506.4107
WSB/EiJ m 4348.9412 373.6482 5082.3949 3615.4875
ZALENDE/EiJ m 5549.5294 373.6482 6282.9831 4816.0757




  GWAS USING LINEAR MIXED MODELS