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Project measure / variable:   Donahue15   fecundity_index

ID, description, units MPD:42406   fecundity_index   mean litter size divided by mean litter interval   [n/wks]  
Data set, strains Donahue15   BXH   11 strains     sex: f     age: 3-55wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue15 - mean litter size divided by mean litter interval



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested11 strains
Mean of the strain means1.00   n/wks
Median of the strain means0.938   n/wks
SD of the strain means± 0.239
Coefficient of variation (CV)0.239
Min–max range of strain means0.614   –   1.54   n/wks
Mean sample size per strain7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 4.3693 0.4369 4.9657 < 0.0001
Residuals 75 6.5991 0.088


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXH10/TyJ f 1.06 0.346   8 0.122 0.326 0.6, 1.5 0.23
BXH14/TyJ f 0.771 0.206   7 0.0778 0.267 0.5, 1.0 -0.97
BXH19/TyJ f 0.912 0.394   8 0.139 0.432 0.5, 1.8 -0.38
BXH20/KccJ f 1.11 0.196   8 0.0693 0.176 0.8, 1.3 0.44
BXH22/KccJ f 1.54 0.272   8 0.0962 0.177 1.2, 1.9 2.24
BXH2/TyJ f 0.938 0.504   8 0.178 0.538 0.5, 1.8 -0.27
BXH4/TyJ f 0.938 0.177   8 0.0625 0.189 0.7, 1.2 -0.27
BXH6/TyJ f 1.12 0.198   8 0.0701 0.176 0.9, 1.5 0.49
BXH7/TyJ f 0.888 0.189   8 0.0666 0.212 0.7, 1.2 -0.48
BXH8/TyJ f 0.614 0.157   7 0.0595 0.256 0.4, 0.9 -1.63
BXH9/TyJ f 1.15 0.37   8 0.131 0.322 0.8, 1.8 0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ f 1.0625 0.1049 1.2714 0.8536
BXH14/TyJ f 0.7714 0.1121 0.9948 0.5481
BXH19/TyJ f 0.9125 0.1049 1.1214 0.7036
BXH20/KccJ f 1.1125 0.1049 1.3214 0.9036
BXH22/KccJ f 1.5375 0.1049 1.7464 1.3286
BXH2/TyJ f 0.9375 0.1049 1.1464 0.7286
BXH4/TyJ f 0.9375 0.1049 1.1464 0.7286
BXH6/TyJ f 1.125 0.1049 1.3339 0.9161
BXH7/TyJ f 0.8875 0.1049 1.0964 0.6786
BXH8/TyJ f 0.6143 0.1121 0.8376 0.3909
BXH9/TyJ f 1.15 0.1049 1.3589 0.9411




  GWAS USING LINEAR MIXED MODELS