Project measure / variable:   Donahue12   litter_size_wean

ID, description, units MPD:42104   litter_size_wean   mean number of pups weaned   [n]  
Data set, strains Donahue12   AXB BXA   28 strains     sex: f     age: 3-50wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue12 - mean number of pups weaned



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested28 strains
Mean of the strain means4.57   n
Median of the strain means4.70   n
SD of the strain means± 0.903
Coefficient of variation (CV)0.198
Min–max range of strain means2.70   –   6.50   n
Mean sample size per strain7.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 168.5791 6.2437 5.0533 < 0.0001
Residuals 189 233.5196 1.2356


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
AXB10/PgnJ f 5.14 1.03   8 0.364 0.2 3.0, 6.3 0.64
AXB12/PgnJ f 3.6 0.854   8 0.302 0.237 2.4, 5.0 -1.07
AXB13/PgnJ f 4.29 1.15   7 0.436 0.269 2.0, 5.3 -0.31
AXB15/PgnJ f 5.95 1.19   8 0.421 0.2 4.3, 8.0 1.53
AXB19a/PgnJ f 4.81 0.522   8 0.185 0.109 4.4, 5.9 0.27
AXB19b/PgnJ f 3.31 0.866   8 0.306 0.261 2.0, 4.9 -1.39
AXB19/PgnJ f 4.76 1.16   8 0.411 0.244 3.0, 6.7 0.21
AXB1/PgnJ f 2.7 1.24   7 0.47 0.461 1.0, 4.5 -2.07
AXB23/PgnJ f 4.16 0.661   8 0.234 0.159 2.8, 5.0 -0.45
AXB24/PgnJ f 4.27 1.1   9 0.368 0.259 2.1, 5.5 -0.33
AXB2/PgnJ f 3.61 1.23   8 0.434 0.34 1.4, 5.7 -1.06
AXB4/PgnJ f 3.47 1.04   7 0.393 0.3 2.0, 4.5 -1.21
AXB5/PgnJ f 5.45 1.86   6 0.761 0.342 4.0, 9.0 0.98
AXB6/PgnJ f 5.41 1.19   8 0.421 0.22 4.4, 8.0 0.93
AXB8/PgnJ f 5.54 1.14   8 0.404 0.207 3.5, 6.9 1.08
BXA11/PgnJ f 5.04 0.758   8 0.268 0.15 4.0, 6.4 0.52
BXA12/PgnJ f 4.25 0.484   8 0.171 0.114 3.5, 4.9 -0.35
BXA13/PgnJ f 3.43 1.57   8 0.557 0.46 1.5, 5.8 -1.26
BXA14/PgnJ f 6.5 1.09   8 0.385 0.168 4.6, 8.0 2.14
BXA16/PgnJ f 3.92 0.487   5 0.218 0.124 3.4, 4.7 -0.72
BXA1/PgnJ f 4.66 1.46   8 0.517 0.314 2.0, 6.3 0.1
BXA24/PgnJ f 5.44 0.807   8 0.285 0.148 4.0, 6.8 0.97
BXA25/PgnJ f 3.85 0.637   8 0.225 0.165 3.0, 5.0 -0.79
BXA26/PgnJ f 3.97 1.54   8 0.544 0.387 1.0, 5.6 -0.66
BXA2/PgnJ f 4.89 1.01   8 0.358 0.207 3.4, 6.3 0.36
BXA4/PgnJ f 4.74 1.57   8 0.556 0.332 2.6, 6.7 0.19
BXA7/PgnJ f 5.22 1.17   8 0.414 0.224 4.0, 7.5 0.72
BXA8/PgnJ f 5.47 0.888   8 0.314 0.162 4.2, 6.8 1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ f 5.1375 0.393 5.9127 4.3623
AXB12/PgnJ f 3.6 0.393 4.3752 2.8248
AXB13/PgnJ f 4.2857 0.4201 5.1145 3.457
AXB15/PgnJ f 5.95 0.393 6.7252 5.1748
AXB19a/PgnJ f 4.8125 0.393 5.5877 4.0373
AXB19b/PgnJ f 3.3125 0.393 4.0877 2.5373
AXB19/PgnJ f 4.7625 0.393 5.5377 3.9873
AXB1/PgnJ f 2.7 0.4201 3.5287 1.8713
AXB23/PgnJ f 4.1625 0.393 4.9377 3.3873
AXB24/PgnJ f 4.2667 0.3705 4.9975 3.5358
AXB2/PgnJ f 3.6125 0.393 4.3877 2.8373
AXB4/PgnJ f 3.4714 0.4201 4.3002 2.6427
AXB5/PgnJ f 5.45 0.4538 6.3451 4.5549
AXB6/PgnJ f 5.4125 0.393 6.1877 4.6373
AXB8/PgnJ f 5.5375 0.393 6.3127 4.7623
BXA11/PgnJ f 5.0375 0.393 5.8127 4.2623
BXA12/PgnJ f 4.25 0.393 5.0252 3.4748
BXA13/PgnJ f 3.425 0.393 4.2002 2.6498
BXA14/PgnJ f 6.5 0.393 7.2752 5.7248
BXA16/PgnJ f 3.92 0.4971 4.9006 2.9394
BXA1/PgnJ f 4.6625 0.393 5.4377 3.8873
BXA24/PgnJ f 5.4375 0.393 6.2127 4.6623
BXA25/PgnJ f 3.85 0.393 4.6252 3.0748
BXA26/PgnJ f 3.975 0.393 4.7502 3.1998
BXA2/PgnJ f 4.8875 0.393 5.6627 4.1123
BXA4/PgnJ f 4.7375 0.393 5.5127 3.9623
BXA7/PgnJ f 5.225 0.393 6.0002 4.4498
BXA8/PgnJ f 5.475 0.393 6.2502 4.6998




  GWAS USING LINEAR MIXED MODELS