Project measure / variable:   Donahue12   litter_size_birth

ID, description, units MPD:42103   litter_size_birth   mean number of pups born   [n]  
Data set, strains Donahue12   AXB BXA   28 strains     sex: f     age: 3-50wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue12 - mean number of pups born



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested28 strains
Mean of the strain means4.93   n
Median of the strain means4.97   n
SD of the strain means± 0.849
Coefficient of variation (CV)0.172
Min–max range of strain means3.23   –   6.60   n
Mean sample size per strain7.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 149.2838 5.529 5.5409 < 0.0001
Residuals 189 188.5945 0.9979


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
AXB10/PgnJ f 5.46 1.02   8 0.362 0.187 3.5, 6.6 0.63
AXB12/PgnJ f 3.85 0.719   8 0.254 0.187 3.0, 5.0 -1.27
AXB13/PgnJ f 4.46 1.19   7 0.45 0.267 2.0, 5.4 -0.55
AXB15/PgnJ f 6.37 1.19   8 0.422 0.187 4.7, 8.5 1.7
AXB19a/PgnJ f 4.95 0.475   8 0.168 0.096 4.4, 5.9 0.03
AXB19b/PgnJ f 3.7 0.616   8 0.218 0.167 3.0, 5.0 -1.45
AXB19/PgnJ f 4.83 1.2   8 0.426 0.25 3.0, 6.7 -0.12
AXB1/PgnJ f 3.23 1.09   7 0.411 0.337 2.0, 5.0 -2.0
AXB23/PgnJ f 4.99 0.906   8 0.32 0.182 4.2, 6.5 0.07
AXB24/PgnJ f 4.94 0.702   9 0.234 0.142 3.7, 5.8 0.01
AXB2/PgnJ f 4.06 0.918   8 0.325 0.226 2.6, 5.7 -1.02
AXB4/PgnJ f 4.07 0.948   7 0.358 0.233 2.0, 4.8 -1.01
AXB5/PgnJ f 5.67 1.73   6 0.707 0.306 4.0, 9.0 0.87
AXB6/PgnJ f 5.67 1.05   8 0.37 0.185 4.5, 8.0 0.87
AXB8/PgnJ f 5.64 1.06   8 0.376 0.189 4.0, 7.0 0.84
BXA11/PgnJ f 5.35 0.721   8 0.255 0.135 4.6, 6.8 0.5
BXA12/PgnJ f 4.53 0.611   8 0.216 0.135 3.6, 5.3 -0.47
BXA13/PgnJ f 3.83 1.43   8 0.504 0.373 2.0, 6.0 -1.29
BXA14/PgnJ f 6.6 1.02   8 0.359 0.154 4.9, 8.0 1.97
BXA16/PgnJ f 4.14 0.439   5 0.196 0.106 3.6, 4.7 -0.93
BXA1/PgnJ f 5.08 1.66   8 0.588 0.328 2.0, 7.0 0.18
BXA24/PgnJ f 5.53 0.727   8 0.257 0.132 4.3, 6.8 0.71
BXA25/PgnJ f 4.03 0.74   8 0.262 0.184 3.0, 5.0 -1.06
BXA26/PgnJ f 4.78 0.69   8 0.244 0.145 4.0, 6.2 -0.17
BXA2/PgnJ f 5.69 0.832   8 0.294 0.146 4.3, 6.8 0.9
BXA4/PgnJ f 5.22 1.28   8 0.454 0.246 3.3, 7.0 0.34
BXA7/PgnJ f 5.26 1.17   8 0.413 0.222 4.0, 7.5 0.39
BXA8/PgnJ f 6.06 0.457   8 0.161 0.0753 5.4, 6.8 1.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ f 5.4625 0.3532 6.1592 4.7658
AXB12/PgnJ f 3.85 0.3532 4.5467 3.1533
AXB13/PgnJ f 4.4571 0.3776 5.2019 3.7124
AXB15/PgnJ f 6.375 0.3532 7.0717 5.6783
AXB19a/PgnJ f 4.95 0.3532 5.6467 4.2533
AXB19b/PgnJ f 3.7 0.3532 4.3967 3.0033
AXB19/PgnJ f 4.825 0.3532 5.5217 4.1283
AXB1/PgnJ f 3.2286 0.3776 3.9733 2.4838
AXB23/PgnJ f 4.9875 0.3532 5.6842 4.2908
AXB24/PgnJ f 4.9444 0.333 5.6013 4.2876
AXB2/PgnJ f 4.0625 0.3532 4.7592 3.3658
AXB4/PgnJ f 4.0714 0.3776 4.8162 3.3267
AXB5/PgnJ f 5.6667 0.4078 6.4711 4.8622
AXB6/PgnJ f 5.675 0.3532 6.3717 4.9783
AXB8/PgnJ f 5.6375 0.3532 6.3342 4.9408
BXA11/PgnJ f 5.35 0.3532 6.0467 4.6533
BXA12/PgnJ f 4.525 0.3532 5.2217 3.8283
BXA13/PgnJ f 3.825 0.3532 4.5217 3.1283
BXA14/PgnJ f 6.6 0.3532 7.2967 5.9033
BXA16/PgnJ f 4.14 0.4467 5.0212 3.2588
BXA1/PgnJ f 5.075 0.3532 5.7717 4.3783
BXA24/PgnJ f 5.525 0.3532 6.2217 4.8283
BXA25/PgnJ f 4.025 0.3532 4.7217 3.3283
BXA26/PgnJ f 4.775 0.3532 5.4717 4.0783
BXA2/PgnJ f 5.6875 0.3532 6.3842 4.9908
BXA4/PgnJ f 5.225 0.3532 5.9217 4.5283
BXA7/PgnJ f 5.2625 0.3532 5.9592 4.5658
BXA8/PgnJ f 6.0625 0.3532 6.7592 5.3658




  GWAS USING LINEAR MIXED MODELS