Project measure / variable:   Donahue4   distance_total

ID, description, units MPD:41321   distance_total   total distance traveled, 10 min test   [cm]  
Data set, strains Donahue4   B6.PWD consomic w/par   28 strains     sex: both     age: 6wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue4 - total distance traveled, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means1861   cm 1841   cm
Median of the strain means1840   cm 1864   cm
SD of the strain means± 369 ± 325
Coefficient of variation (CV)0.198 0.177
Min–max range of strain means1161   –   2964   cm 1222   –   2636   cm
Mean sample size per strain7.8   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 20890.8955 20890.8955 0.143 0.7055
strain 27 40985785.8467 1517992.0684 10.3902 < 0.0001
sex:strain 27 8949731.4319 331471.5345 2.2688 0.0004
Residuals 371 54202349.456 146097.977


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 1629.0 272.0   8 96.1 0.167 1220.0, 2002.0 -0.63
B6.PWD-Chr1 m 1491.0 289.0   8 102.0 0.194 1118.0, 2029.0 -1.08
B6.PWD-Chr10.1 f 1928.0 451.0   8 160.0 0.234 1413.0, 2784.0 0.18
B6.PWD-Chr10.1 m 2049.0 691.0   8 244.0 0.337 1417.0, 3402.0 0.64
B6.PWD-Chr10.2 f 1843.0 291.0   8 103.0 0.158 1417.0, 2271.0 -0.05
B6.PWD-Chr10.2 m 1657.0 301.0   8 107.0 0.182 1353.0, 2193.0 -0.57
B6.PWD-Chr10.3 f 1634.0 352.0   8 124.0 0.215 1129.0, 2098.0 -0.61
B6.PWD-Chr10.3 m 1570.0 177.0   8 62.6 0.113 1332.0, 1869.0 -0.83
B6.PWD-Chr11.1 f 1794.0 169.0   8 59.7 0.0941 1586.0, 2013.0 -0.18
B6.PWD-Chr11.1 m 1879.0 238.0   8 84.1 0.127 1597.0, 2313.0 0.12
B6.PWD-Chr11.2 f 1443.0 388.0   7 146.0 0.269 1062.0, 2079.0 -1.13
B6.PWD-Chr11.2 m 1410.0 276.0   7 104.0 0.196 1176.0, 1972.0 -1.33
B6.PWD-Chr11.3 f 1631.0 441.0   8 156.0 0.27 941.0, 2163.0 -0.62
B6.PWD-Chr11.3 m 1624.0 494.0   8 175.0 0.304 922.0, 2349.0 -0.67
B6.PWD-Chr12 f 2160.0 435.0   8 154.0 0.201 1729.0, 2893.0 0.81
B6.PWD-Chr12 m 2099.0 289.0   8 102.0 0.138 1563.0, 2537.0 0.79
B6.PWD-Chr13 f 2362.0 447.0   8 158.0 0.189 1829.0, 3024.0 1.36
B6.PWD-Chr13 m 2342.0 497.0   8 176.0 0.212 1694.0, 3257.0 1.54
B6.PWD-Chr14 f 2240.0 459.0   8 162.0 0.205 1680.0, 2917.0 1.03
B6.PWD-Chr14 m 2304.0 504.0   8 178.0 0.219 1647.0, 3048.0 1.42
B6.PWD-Chr15 f 1952.0 308.0   8 109.0 0.158 1481.0, 2472.0 0.25
B6.PWD-Chr15 m 1903.0 298.0   8 105.0 0.157 1543.0, 2260.0 0.19
B6.PWD-Chr16 f 2053.0 427.0   8 151.0 0.208 1577.0, 2702.0 0.52
B6.PWD-Chr16 m 2154.0 412.0   8 146.0 0.191 1455.0, 2775.0 0.96
B6.PWD-Chr17 f 1472.0 202.0   8 71.5 0.137 1194.0, 1731.0 -1.05
B6.PWD-Chr17 m 1222.0 333.0   6 136.0 0.272 871.0, 1657.0 -1.9
B6.PWD-Chr18 f 1837.0 518.0   8 183.0 0.282 1323.0, 3041.0 -0.06
B6.PWD-Chr18 m 1835.0 372.0   8 132.0 0.203 1256.0, 2238.0 -0.02
B6.PWD-Chr19 f 1488.0 216.0   8 76.4 0.145 1205.0, 1907.0 -1.01
B6.PWD-Chr19 m 1939.0 328.0   7 124.0 0.169 1593.0, 2411.0 0.3
B6.PWD-Chr2 f 2964.0 435.0   8 154.0 0.147 2410.0, 3685.0 2.99
B6.PWD-Chr2 m 1901.0 545.0   8 193.0 0.287 758.0, 2475.0 0.18
B6.PWD-Chr3 f 2124.0 276.0   8 97.5 0.13 1748.0, 2476.0 0.71
B6.PWD-Chr3 m 1920.0 340.0   3 197.0 0.177 1618.0, 2289.0 0.24
B6.PWD-Chr5 f 1483.0 303.0   8 107.0 0.204 1042.0, 1871.0 -1.02
B6.PWD-Chr5 m 1599.0 393.0   8 139.0 0.246 1059.0, 2126.0 -0.74
B6.PWD-Chr6 f 1562.0 416.0   8 147.0 0.266 949.0, 2105.0 -0.81
B6.PWD-Chr6 m 1960.0 463.0   8 164.0 0.236 1545.0, 2932.0 0.37
B6.PWD-Chr8 f 2003.0 407.0   5 182.0 0.203 1629.0, 2633.0 0.39
B6.PWD-Chr8 m 2039.0 403.0   6 165.0 0.198 1266.0, 2310.0 0.61
B6.PWD-Chr9 f 1985.0 420.0   8 148.0 0.212 1520.0, 2708.0 0.34
B6.PWD-Chr9 m 2636.0 511.0   8 181.0 0.194 1674.0, 3254.0 2.44
B6.PWD-ChrX.1 f 2345.0 358.0   6 146.0 0.153 1945.0, 2989.0 1.31
B6.PWD-ChrX.1 m 2101.0 462.0   8 163.0 0.22 1209.0, 2548.0 0.8
B6.PWD-ChrX.2 f 2100.0 317.0   8 112.0 0.151 1590.0, 2594.0 0.65
B6.PWD-ChrX.2 m 1831.0 406.0   7 153.0 0.222 1230.0, 2355.0 -0.03
B6.PWD-ChrX.3 f 1467.0 440.0   8 156.0 0.3 1099.0, 2195.0 -1.07
B6.PWD-ChrX.3 m 1492.0 190.0   8 67.3 0.128 1203.0, 1704.0 -1.07
B6.PWD-ChrY f 1888.0 404.0   7 153.0 0.214 1584.0, 2667.0 0.07
B6.PWD-ChrY m 1783.0 255.0   7 96.3 0.143 1357.0, 2031.0 -0.18
B6.PWD-mt f 1805.0 246.0   8 87.0 0.136 1359.0, 2132.0 -0.15
B6.PWD-mt m 1726.0 317.0   8 112.0 0.184 1287.0, 2168.0 -0.35
C57BL/6J f 1746.0 370.0   8 131.0 0.212 1207.0, 2500.0 -0.31
C57BL/6J m 1848.0 305.0   8 108.0 0.165 1539.0, 2349.0 0.02
PWD/PhJ f 1161.0 420.0   7 159.0 0.361 562.0, 1565.0 -1.9
PWD/PhJ m 1239.0 284.0   8 100.0 0.229 813.0, 1741.0 -1.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 1629.25 135.1379 1894.9823 1363.5177
B6.PWD-Chr1 m 1490.75 135.1379 1756.4823 1225.0177
B6.PWD-Chr10.1 f 1927.5 135.1379 2193.2323 1661.7677
B6.PWD-Chr10.1 m 2049.25 135.1379 2314.9823 1783.5177
B6.PWD-Chr10.2 f 1843.0 135.1379 2108.7323 1577.2677
B6.PWD-Chr10.2 m 1657.375 135.1379 1923.1073 1391.6427
B6.PWD-Chr10.3 f 1634.0 135.1379 1899.7323 1368.2677
B6.PWD-Chr10.3 m 1569.5 135.1379 1835.2323 1303.7677
B6.PWD-Chr11.1 f 1794.125 135.1379 2059.8573 1528.3927
B6.PWD-Chr11.1 m 1879.0 135.1379 2144.7323 1613.2677
B6.PWD-Chr11.2 f 1442.5714 144.4685 1726.6512 1158.4917
B6.PWD-Chr11.2 m 1409.8571 144.4685 1693.9369 1125.7774
B6.PWD-Chr11.3 f 1631.125 135.1379 1896.8573 1365.3927
B6.PWD-Chr11.3 m 1624.375 135.1379 1890.1073 1358.6427
B6.PWD-Chr12 f 2160.0 135.1379 2425.7323 1894.2677
B6.PWD-Chr12 m 2098.75 135.1379 2364.4823 1833.0177
B6.PWD-Chr13 f 2361.75 135.1379 2627.4823 2096.0177
B6.PWD-Chr13 m 2342.5 135.1379 2608.2323 2076.7677
B6.PWD-Chr14 f 2239.875 135.1379 2505.6073 1974.1427
B6.PWD-Chr14 m 2304.125 135.1379 2569.8573 2038.3927
B6.PWD-Chr15 f 1951.75 135.1379 2217.4823 1686.0177
B6.PWD-Chr15 m 1903.0 135.1379 2168.7323 1637.2677
B6.PWD-Chr16 f 2052.875 135.1379 2318.6073 1787.1427
B6.PWD-Chr16 m 2154.25 135.1379 2419.9823 1888.5177
B6.PWD-Chr17 f 1471.625 135.1379 1737.3573 1205.8927
B6.PWD-Chr17 m 1222.5 156.0438 1529.3412 915.6588
B6.PWD-Chr18 f 1837.375 135.1379 2103.1073 1571.6427
B6.PWD-Chr18 m 1835.25 135.1379 2100.9823 1569.5177
B6.PWD-Chr19 f 1488.375 135.1379 1754.1073 1222.6427
B6.PWD-Chr19 m 1938.7143 144.4685 2222.794 1654.6345
B6.PWD-Chr2 f 2963.625 135.1379 3229.3573 2697.8927
B6.PWD-Chr2 m 1900.875 135.1379 2166.6073 1635.1427
B6.PWD-Chr3 f 2124.25 135.1379 2389.9823 1858.5177
B6.PWD-Chr3 m 1920.0 220.6792 2353.939 1486.061
B6.PWD-Chr5 f 1482.625 135.1379 1748.3573 1216.8927
B6.PWD-Chr5 m 1598.75 135.1379 1864.4823 1333.0177
B6.PWD-Chr6 f 1562.5 135.1379 1828.2323 1296.7677
B6.PWD-Chr6 m 1960.375 135.1379 2226.1073 1694.6427
B6.PWD-Chr8 f 2003.4 170.9374 2339.5277 1667.2723
B6.PWD-Chr8 m 2039.1667 156.0438 2346.0079 1732.3255
B6.PWD-Chr9 f 1985.125 135.1379 2250.8573 1719.3927
B6.PWD-Chr9 m 2635.75 135.1379 2901.4823 2370.0177
B6.PWD-ChrX.1 f 2344.8333 156.0438 2651.6745 2037.9921
B6.PWD-ChrX.1 m 2101.375 135.1379 2367.1073 1835.6427
B6.PWD-ChrX.2 f 2100.0 135.1379 2365.7323 1834.2677
B6.PWD-ChrX.2 m 1831.1429 144.4685 2115.2226 1547.0631
B6.PWD-ChrX.3 f 1466.625 135.1379 1732.3573 1200.8927
B6.PWD-ChrX.3 m 1491.875 135.1379 1757.6073 1226.1427
B6.PWD-ChrY f 1888.0 144.4685 2172.0797 1603.9203
B6.PWD-ChrY m 1782.8571 144.4685 2066.9369 1498.7774
B6.PWD-mt f 1804.875 135.1379 2070.6073 1539.1427
B6.PWD-mt m 1725.75 135.1379 1991.4823 1460.0177
C57BL/6J f 1745.625 135.1379 2011.3573 1479.8927
C57BL/6J m 1847.5 135.1379 2113.2323 1581.7677
PWD/PhJ f 1161.0 144.4685 1445.0797 876.9203
PWD/PhJ m 1238.875 135.1379 1504.6073 973.1427


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 1560.0 95.5569 1747.9011 1372.0989
B6.PWD-Chr10.1 both 1988.375 95.5569 2176.2761 1800.4739
B6.PWD-Chr10.2 both 1750.1875 95.5569 1938.0886 1562.2864
B6.PWD-Chr10.3 both 1601.75 95.5569 1789.6511 1413.8489
B6.PWD-Chr11.1 both 1836.5625 95.5569 2024.4636 1648.6614
B6.PWD-Chr11.2 both 1426.2143 102.1546 1627.089 1225.3396
B6.PWD-Chr11.3 both 1627.75 95.5569 1815.6511 1439.8489
B6.PWD-Chr12 both 2129.375 95.5569 2317.2761 1941.4739
B6.PWD-Chr13 both 2352.125 95.5569 2540.0261 2164.2239
B6.PWD-Chr14 both 2272.0 95.5569 2459.9011 2084.0989
B6.PWD-Chr15 both 1927.375 95.5569 2115.2761 1739.4739
B6.PWD-Chr16 both 2103.5625 95.5569 2291.4636 1915.6614
B6.PWD-Chr17 both 1347.0625 103.2133 1550.0189 1144.1061
B6.PWD-Chr18 both 1836.3125 95.5569 2024.2136 1648.4114
B6.PWD-Chr19 both 1713.5446 98.9108 1908.0407 1519.0485
B6.PWD-Chr2 both 2432.25 95.5569 2620.1511 2244.3489
B6.PWD-Chr3 both 2022.125 129.3847 2276.5443 1767.7057
B6.PWD-Chr5 both 1540.6875 95.5569 1728.5886 1352.7864
B6.PWD-Chr6 both 1761.4375 95.5569 1949.3386 1573.5364
B6.PWD-Chr8 both 2021.2833 115.7252 2248.8429 1793.7238
B6.PWD-Chr9 both 2310.4375 95.5569 2498.3386 2122.5364
B6.PWD-ChrX.1 both 2223.1042 103.2133 2426.0605 2020.1478
B6.PWD-ChrX.2 both 1965.5714 98.9108 2160.0675 1771.0753
B6.PWD-ChrX.3 both 1479.25 95.5569 1667.1511 1291.3489
B6.PWD-ChrY both 1835.4286 102.1546 2036.3033 1634.5539
B6.PWD-mt both 1765.3125 95.5569 1953.2136 1577.4114
C57BL/6J both 1796.5625 95.5569 1984.4636 1608.6614
PWD/PhJ both 1199.9375 98.9108 1394.4336 1005.4414




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA