Project measure / variable:   Donahue4   duration_horiz

ID, description, units MPD:41303   duration_horiz   duration of total horizontal activity, 10 min test   [s]  
Data set, strains Donahue4   B6.PWD consomic w/par   28 strains     sex: both     age: 6wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue4 - duration of total horizontal activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means192   s 191   s
Median of the strain means194   s 194   s
SD of the strain means± 30.1 ± 31.0
Coefficient of variation (CV)0.157 0.162
Min–max range of strain means134   –   248   s 121   –   246   s
Mean sample size per strain7.8   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 44.8339 44.8339 0.0386 0.8443
strain 27 340232.9601 12601.2207 10.8587 < 0.0001
sex:strain 27 44420.8983 1645.2185 1.4177 0.0837
Residuals 371 430533.9903 1160.469


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 161.0 24.1   8 8.53 0.15 121.0, 197.0 -1.01
B6.PWD-Chr1 m 150.0 29.5   8 10.4 0.197 122.0, 193.0 -1.31
B6.PWD-Chr10.1 f 195.0 26.6   8 9.4 0.136 171.0, 251.0 0.12
B6.PWD-Chr10.1 m 200.0 46.0   8 16.3 0.231 144.0, 281.0 0.3
B6.PWD-Chr10.2 f 199.0 26.7   8 9.45 0.134 156.0, 232.0 0.25
B6.PWD-Chr10.2 m 180.0 34.2   8 12.1 0.19 144.0, 241.0 -0.34
B6.PWD-Chr10.3 f 177.0 35.8   8 12.6 0.202 127.0, 214.0 -0.48
B6.PWD-Chr10.3 m 173.0 22.4   8 7.91 0.129 146.0, 204.0 -0.57
B6.PWD-Chr11.1 f 191.0 14.6   8 5.18 0.0768 174.0, 216.0 -0.02
B6.PWD-Chr11.1 m 201.0 14.7   8 5.19 0.073 181.0, 222.0 0.34
B6.PWD-Chr11.2 f 139.0 34.0   7 12.8 0.244 106.0, 193.0 -1.74
B6.PWD-Chr11.2 m 148.0 22.2   7 8.38 0.15 128.0, 193.0 -1.38
B6.PWD-Chr11.3 f 177.0 45.8   8 16.2 0.259 94.8, 229.0 -0.48
B6.PWD-Chr11.3 m 172.0 49.8   8 17.6 0.29 97.9, 237.0 -0.6
B6.PWD-Chr12 f 228.0 38.2   8 13.5 0.168 187.0, 293.0 1.21
B6.PWD-Chr12 m 232.0 29.0   8 10.2 0.125 181.0, 270.0 1.34
B6.PWD-Chr13 f 229.0 35.0   8 12.4 0.153 184.0, 276.0 1.24
B6.PWD-Chr13 m 220.0 44.9   8 15.9 0.204 168.0, 308.0 0.95
B6.PWD-Chr14 f 231.0 26.7   8 9.45 0.116 204.0, 275.0 1.31
B6.PWD-Chr14 m 240.0 37.5   8 13.2 0.156 190.0, 290.0 1.59
B6.PWD-Chr15 f 192.0 30.9   8 10.9 0.161 152.0, 243.0 0.02
B6.PWD-Chr15 m 187.0 29.5   8 10.4 0.158 130.0, 230.0 -0.12
B6.PWD-Chr16 f 222.0 37.6   8 13.3 0.17 180.0, 286.0 1.01
B6.PWD-Chr16 m 228.0 40.8   8 14.4 0.179 149.0, 281.0 1.21
B6.PWD-Chr17 f 161.0 21.0   8 7.42 0.131 127.0, 181.0 -1.01
B6.PWD-Chr17 m 135.0 26.9   6 11.0 0.199 107.0, 176.0 -1.8
B6.PWD-Chr18 f 195.0 41.7   8 14.7 0.214 145.0, 286.0 0.12
B6.PWD-Chr18 m 204.0 35.2   8 12.4 0.172 153.0, 238.0 0.43
B6.PWD-Chr19 f 167.0 24.9   8 8.82 0.15 144.0, 223.0 -0.81
B6.PWD-Chr19 m 206.0 28.1   7 10.6 0.136 178.0, 260.0 0.5
B6.PWD-Chr2 f 248.0 25.3   8 8.94 0.102 211.0, 274.0 1.88
B6.PWD-Chr2 m 191.0 40.5   8 14.3 0.212 106.0, 239.0 0.01
B6.PWD-Chr3 f 225.0 33.7   8 11.9 0.15 176.0, 266.0 1.11
B6.PWD-Chr3 m 207.0 25.0   3 14.4 0.12 182.0, 232.0 0.53
B6.PWD-Chr5 f 165.0 32.6   8 11.5 0.198 115.0, 210.0 -0.88
B6.PWD-Chr5 m 171.0 40.2   8 14.2 0.235 112.0, 232.0 -0.63
B6.PWD-Chr6 f 161.0 42.3   8 14.9 0.263 114.0, 220.0 -1.01
B6.PWD-Chr6 m 204.0 51.1   8 18.1 0.25 149.0, 305.0 0.43
B6.PWD-Chr8 f 196.0 30.8   5 13.8 0.157 171.0, 246.0 0.15
B6.PWD-Chr8 m 197.0 37.8   6 15.4 0.192 123.0, 230.0 0.21
B6.PWD-Chr9 f 203.0 33.9   8 12.0 0.167 170.0, 267.0 0.38
B6.PWD-Chr9 m 246.0 37.5   8 13.3 0.153 175.0, 290.0 1.79
B6.PWD-ChrX.1 f 234.0 19.7   6 8.05 0.0843 215.0, 267.0 1.41
B6.PWD-ChrX.1 m 220.0 40.4   8 14.3 0.184 139.0, 265.0 0.95
B6.PWD-ChrX.2 f 203.0 27.8   8 9.83 0.137 150.0, 241.0 0.38
B6.PWD-ChrX.2 m 184.0 37.6   7 14.2 0.204 120.0, 238.0 -0.21
B6.PWD-ChrX.3 f 145.0 39.4   8 13.9 0.272 105.0, 202.0 -1.54
B6.PWD-ChrX.3 m 149.0 18.8   8 6.63 0.126 123.0, 169.0 -1.34
B6.PWD-ChrY f 199.0 37.4   7 14.2 0.188 162.0, 275.0 0.25
B6.PWD-ChrY m 194.0 32.6   7 12.3 0.168 136.0, 231.0 0.11
B6.PWD-mt f 193.0 26.8   8 9.47 0.139 155.0, 224.0 0.05
B6.PWD-mt m 182.0 33.5   8 11.8 0.184 137.0, 241.0 -0.28
C57BL/6J f 192.0 39.8   8 14.1 0.208 147.0, 278.0 0.02
C57BL/6J m 195.0 31.3   8 11.1 0.161 169.0, 260.0 0.14
PWD/PhJ f 134.0 38.9   7 14.7 0.291 76.4, 175.0 -1.91
PWD/PhJ m 121.0 30.5   8 10.8 0.252 77.2, 178.0 -2.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 160.6625 12.044 184.3456 136.9794
B6.PWD-Chr1 m 149.55 12.044 173.2331 125.8669
B6.PWD-Chr10.1 f 194.925 12.044 218.6081 171.2419
B6.PWD-Chr10.1 m 199.575 12.044 223.2581 175.8919
B6.PWD-Chr10.2 f 198.8 12.044 222.4831 175.1169
B6.PWD-Chr10.2 m 180.025 12.044 203.7081 156.3419
B6.PWD-Chr10.3 f 177.425 12.044 201.1081 153.7419
B6.PWD-Chr10.3 m 172.85 12.044 196.5331 149.1669
B6.PWD-Chr11.1 f 190.65 12.044 214.3331 166.9669
B6.PWD-Chr11.1 m 201.0625 12.044 224.7456 177.3794
B6.PWD-Chr11.2 f 139.3857 12.8756 164.704 114.0674
B6.PWD-Chr11.2 m 148.0286 12.8756 173.3469 122.7102
B6.PWD-Chr11.3 f 177.275 12.044 200.9581 153.5919
B6.PWD-Chr11.3 m 171.6 12.044 195.2831 147.9169
B6.PWD-Chr12 f 228.2625 12.044 251.9456 204.5794
B6.PWD-Chr12 m 232.25 12.044 255.9331 208.5669
B6.PWD-Chr13 f 228.8875 12.044 252.5706 205.2044
B6.PWD-Chr13 m 220.0125 12.044 243.6956 196.3294
B6.PWD-Chr14 f 231.1875 12.044 254.8706 207.5044
B6.PWD-Chr14 m 239.9625 12.044 263.6456 216.2794
B6.PWD-Chr15 f 191.5625 12.044 215.2456 167.8794
B6.PWD-Chr15 m 186.725 12.044 210.4081 163.0419
B6.PWD-Chr16 f 221.6 12.044 245.2831 197.9169
B6.PWD-Chr16 m 227.8 12.044 251.4831 204.1169
B6.PWD-Chr17 f 160.6375 12.044 184.3206 136.9544
B6.PWD-Chr17 m 135.3333 13.9072 162.6802 107.9864
B6.PWD-Chr18 f 195.0375 12.044 218.7206 171.3544
B6.PWD-Chr18 m 204.2125 12.044 227.8956 180.5294
B6.PWD-Chr19 f 166.6375 12.044 190.3206 142.9544
B6.PWD-Chr19 m 206.1429 12.8756 231.4612 180.8245
B6.PWD-Chr2 f 248.1875 12.044 271.8706 224.5044
B6.PWD-Chr2 m 190.7375 12.044 214.4206 167.0544
B6.PWD-Chr3 f 224.5625 12.044 248.2456 200.8794
B6.PWD-Chr3 m 207.2333 19.6678 245.9077 168.559
B6.PWD-Chr5 f 164.6 12.044 188.2831 140.9169
B6.PWD-Chr5 m 171.15 12.044 194.8331 147.4669
B6.PWD-Chr6 f 160.8125 12.044 184.4956 137.1294
B6.PWD-Chr6 m 204.4 12.044 228.0831 180.7169
B6.PWD-Chr8 f 196.02 15.2346 225.977 166.063
B6.PWD-Chr8 m 196.9833 13.9072 224.3302 169.6364
B6.PWD-Chr9 f 203.025 12.044 226.7081 179.3419
B6.PWD-Chr9 m 245.775 12.044 269.4581 222.0919
B6.PWD-ChrX.1 f 233.95 13.9072 261.2969 206.6031
B6.PWD-ChrX.1 m 219.5 12.044 243.1831 195.8169
B6.PWD-ChrX.2 f 202.675 12.044 226.3581 178.9919
B6.PWD-ChrX.2 m 184.2286 12.8756 209.5469 158.9102
B6.PWD-ChrX.3 f 144.6375 12.044 168.3206 120.9544
B6.PWD-ChrX.3 m 148.5125 12.044 172.1956 124.8294
B6.PWD-ChrY f 199.2 12.8756 224.5183 173.8817
B6.PWD-ChrY m 193.9571 12.8756 219.2755 168.6388
B6.PWD-mt f 193.3375 12.044 217.0206 169.6544
B6.PWD-mt m 181.7625 12.044 205.4456 158.0794
C57BL/6J f 191.5375 12.044 215.2206 167.8544
C57BL/6J m 195.0 12.044 218.6831 171.3169
PWD/PhJ f 133.6 12.8756 158.9183 108.2817
PWD/PhJ m 121.1125 12.044 144.7956 97.4294


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 155.1063 8.5164 171.8527 138.3598
B6.PWD-Chr10.1 both 197.25 8.5164 213.9965 180.5035
B6.PWD-Chr10.2 both 189.4125 8.5164 206.159 172.666
B6.PWD-Chr10.3 both 175.1375 8.5164 191.884 158.391
B6.PWD-Chr11.1 both 195.8563 8.5164 212.6027 179.1098
B6.PWD-Chr11.2 both 143.7071 9.1044 161.6099 125.8044
B6.PWD-Chr11.3 both 174.4375 8.5164 191.184 157.691
B6.PWD-Chr12 both 230.2562 8.5164 247.0027 213.5098
B6.PWD-Chr13 both 224.45 8.5164 241.1965 207.7035
B6.PWD-Chr14 both 235.575 8.5164 252.3215 218.8285
B6.PWD-Chr15 both 189.1438 8.5164 205.8902 172.3973
B6.PWD-Chr16 both 224.7 8.5164 241.4465 207.9535
B6.PWD-Chr17 both 147.9854 9.1988 166.0737 129.8971
B6.PWD-Chr18 both 199.625 8.5164 216.3715 182.8785
B6.PWD-Chr19 both 186.3902 8.8153 203.7244 169.0559
B6.PWD-Chr2 both 219.4625 8.5164 236.209 202.716
B6.PWD-Chr3 both 215.8979 11.5313 238.5728 193.2231
B6.PWD-Chr5 both 167.875 8.5164 184.6215 151.1285
B6.PWD-Chr6 both 182.6062 8.5164 199.3527 165.8598
B6.PWD-Chr8 both 196.5017 10.3139 216.7827 176.2207
B6.PWD-Chr9 both 224.4 8.5164 241.1465 207.6535
B6.PWD-ChrX.1 both 226.725 9.1988 244.8133 208.6367
B6.PWD-ChrX.2 both 193.4518 8.8153 210.7861 176.1175
B6.PWD-ChrX.3 both 146.575 8.5164 163.3215 129.8285
B6.PWD-ChrY both 196.5786 9.1044 214.4813 178.6758
B6.PWD-mt both 187.55 8.5164 204.2965 170.8035
C57BL/6J both 193.2688 8.5164 210.0152 176.5223
PWD/PhJ both 127.3562 8.8153 144.6905 110.022




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA