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Project measure / variable:   Jentsch1   acq_no_choice

ID, description, units MPD:40302   acq_no_choice   number of trials with no choice made in first 30 s, acquisition phase   [n]  
Data set, strains Jentsch1   BXD w/par   53 strains     sex: m     age: 17wks
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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Jentsch1 - number of trials with no choice made in first 30 s, acquisition phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested53 strains
Mean of the strain means25.3   n
Median of the strain means18.8   n
SD of the strain means± 24.8
Coefficient of variation (CV)0.981
Min–max range of strain means0.500   –   142   n
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 52 104929.5652 2017.8763 1.7494 0.0063
Residuals 123 141879.8667 1153.4949


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ m 69.8 50.9   5 22.8 0.73 14.0, 149.0 1.79
BXD102/RwwJ m 31.8 41.0   5 18.3 1.29 2.0, 101.0 0.26
BXD12/TyJ m 22.5 26.2   2   18.5 1.16 4.0, 41.0 -0.11
BXD13/TyJ m 30.0 7.07   2   5.0 0.236 25.0, 35.0 0.19
BXD14/TyJ m 12.0 15.6   2   11.0 1.3 1.0, 23.0 -0.54
BXD16/TyJ m 5.0 2.83   2   2.0 0.566 3.0, 7.0 -0.82
BXD18/TyJ m 2.0 2.83   2   2.0 1.41 -0.94
BXD1/TyJ m 35.8 37.7   5 16.9 1.05 3.0, 94.0 0.42
BXD22/TyJ m 11.0 1.41   2   1.0 0.129 10.0, 12.0 -0.58
BXD24/TyJ m 90.4 85.6   5 38.3 0.947 28.0, 214.0 2.62
BXD25/TyJ m 77.5 67.2   2   47.5 0.867 30.0, 125.0 2.1
BXD29-Tlr4lps-2J/J m 18.5 21.9   2   15.5 1.18 3.0, 34.0 -0.28
BXD2/TyJ m 45.5 16.3   2   11.5 0.357 34.0, 57.0 0.81
BXD31/TyJ m 20.0 15.1   4 7.56 0.756 1.0, 38.0 -0.21
BXD32/TyJ m 12.2 11.3   4 5.66 0.924 2.0, 26.0 -0.53
BXD34/TyJ m 16.7 13.9   6 5.68 0.835 1.0, 41.0 -0.35
BXD36/TyJ m 18.5 13.4   2   9.5 0.726 9.0, 28.0 -0.28
BXD38/TyJ m 12.8 21.6   4 10.8 1.69 -0.5
BXD39/TyJ m 142.0 47.9   3 27.7 0.338 113.0, 197.0 4.7
BXD40/TyJ m 34.6 30.7   5 13.7 0.888 3.0, 73.0 0.37
BXD42/TyJ m 18.8 31.7   5 14.2 1.69 1.0, 75.0 -0.26
BXD43/RwwJ m 5.0 4.69   4 2.35 0.938 2.0, 12.0 -0.82
BXD44/RwwJ m 9.0 0.0   2   0.0 0.0 9.0, 9.0 -0.66
BXD45/RwwJ m 2.0 1.41   2   1.0 0.707 1.0, 3.0 -0.94
BXD48a/RwwJ m 32.5 35.9   4 18.0 1.1 4.0, 85.0 0.29
BXD49/RwwJ m 18.5 14.8   2   10.5 0.803 8.0, 29.0 -0.28
BXD50/RwwJ m 22.8 24.1   4 12.0 1.06 1.0, 54.0 -0.1
BXD51/RwwJ m 4.67 3.06   3 1.76 0.655 2.0, 8.0 -0.83
BXD55/RwwJ m 35.3 48.8   3 28.2 1.38 0.4
BXD56/RwwJ m 1.5 0.707   2   0.5 0.471 1.0, 2.0 -0.96
BXD60/RwwJ m 21.5 30.4   2   21.5 1.41 -0.15
BXD61/RwwJ m 28.3 11.0   3 6.33 0.387 16.0, 37.0 0.12
BXD62/RwwJ m 6.2 3.42   5 1.53 0.552 1.0, 10.0 -0.77
BXD65/RwwJ m 4.5 3.54   2   2.5 0.786 2.0, 7.0 -0.84
BXD66/RwwJ m 15.0 7.07   2   5.0 0.471 10.0, 20.0 -0.42
BXD68/RwwJ m 9.67 14.4   6 5.9 1.49 1.0, 37.0 -0.63
BXD70/RwwJ m 43.3 32.3   3 18.7 0.746 6.0, 63.0 0.72
BXD71/RwwJ m 13.0 23.4   4 11.7 1.8 -0.5
BXD73a/RwwJ m 17.0 14.6   5 6.54 0.861 2.0, 39.0 -0.34
BXD73b/RwwJ m 24.2 38.1   4 19.0 1.57 1.0, 81.0 -0.05
BXD73/RwwJ m 5.0 2.83   2   2.0 0.566 3.0, 7.0 -0.82
BXD75/RwwJ m 11.8 12.3   5 5.49 1.04 3.0, 32.0 -0.54
BXD77/RwwJ m 26.0 32.5   2   23.0 1.25 3.0, 49.0 0.03
BXD83/RwwJ m 23.5 19.4   4 9.68 0.824 9.0, 52.0 -0.07
BXD84/RwwJ m 45.3 65.8   3 38.0 1.45 2.0, 121.0 0.8
BXD85/RwwJ m 36.6 47.5   5 21.2 1.3 2.0, 116.0 0.45
BXD86/RwwJ m 51.8 73.4   4 36.7 1.42 1.07
BXD89/RwwJ m 29.0 45.9   3 26.5 1.58 2.0, 82.0 0.15
BXD90/RwwJ m 8.0 11.3   2   8.0 1.41 -0.7
BXD95/RwwJ m 22.5 3.54   2   2.5 0.157 20.0, 25.0 -0.11
BXD98/RwwJ m 0.5 0.707   2   0.5 1.41 -1.0
C57BL/6J m 23.2 28.2   5 12.6 1.22 1.0, 68.0 -0.09
DBA/2J m 18.2 21.9   4 10.9 1.2 2.0, 50.0 -0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ m 69.8 15.1888 99.8653 39.7347
BXD102/RwwJ m 31.8 15.1888 61.8653 1.7347
BXD12/TyJ m 22.5 24.0156 70.0373 0.0
BXD13/TyJ m 30.0 24.0156 77.5373 0.0
BXD14/TyJ m 12.0 24.0156 59.5373 0.0
BXD16/TyJ m 5.0 24.0156 52.5373 0.0
BXD18/TyJ m 2.0 24.0156 49.5373 0.0
BXD1/TyJ m 35.8 15.1888 65.8653 5.7347
BXD22/TyJ m 11.0 24.0156 58.5373 0.0
BXD24/TyJ m 90.4 15.1888 120.4653 60.3347
BXD25/TyJ m 77.5 24.0156 125.0373 29.9627
BXD29-Tlr4lps-2J/J m 18.5 24.0156 66.0373 0.0
BXD2/TyJ m 45.5 24.0156 93.0373 0.0
BXD31/TyJ m 20.0 16.9816 53.614 0.0
BXD32/TyJ m 12.25 16.9816 45.864 0.0
BXD34/TyJ m 16.6667 13.8654 44.1124 0.0
BXD36/TyJ m 18.5 24.0156 66.0373 0.0
BXD38/TyJ m 12.75 16.9816 46.364 0.0
BXD39/TyJ m 141.6667 19.6086 180.4807 102.8526
BXD40/TyJ m 34.6 15.1888 64.6653 4.5347
BXD42/TyJ m 18.8 15.1888 48.8653 0.0
BXD43/RwwJ m 5.0 16.9816 38.614 0.0
BXD44/RwwJ m 9.0 24.0156 56.5373 0.0
BXD45/RwwJ m 2.0 24.0156 49.5373 0.0
BXD48a/RwwJ m 32.5 16.9816 66.114 0.0
BXD49/RwwJ m 18.5 24.0156 66.0373 0.0
BXD50/RwwJ m 22.75 16.9816 56.364 0.0
BXD51/RwwJ m 4.6667 19.6086 43.4807 0.0
BXD55/RwwJ m 35.3333 19.6086 74.1474 0.0
BXD56/RwwJ m 1.5 24.0156 49.0373 0.0
BXD60/RwwJ m 21.5 24.0156 69.0373 0.0
BXD61/RwwJ m 28.3333 19.6086 67.1474 0.0
BXD62/RwwJ m 6.2 15.1888 36.2653 0.0
BXD65/RwwJ m 4.5 24.0156 52.0373 0.0
BXD66/RwwJ m 15.0 24.0156 62.5373 0.0
BXD68/RwwJ m 9.6667 13.8654 37.1124 0.0
BXD70/RwwJ m 43.3333 19.6086 82.1474 4.5193
BXD71/RwwJ m 13.0 16.9816 46.614 0.0
BXD73a/RwwJ m 17.0 15.1888 47.0653 0.0
BXD73b/RwwJ m 24.25 16.9816 57.864 0.0
BXD73/RwwJ m 5.0 24.0156 52.5373 0.0
BXD75/RwwJ m 11.8 15.1888 41.8653 0.0
BXD77/RwwJ m 26.0 24.0156 73.5373 0.0
BXD83/RwwJ m 23.5 16.9816 57.114 0.0
BXD84/RwwJ m 45.3333 19.6086 84.1474 6.5193
BXD85/RwwJ m 36.6 15.1888 66.6653 6.5347
BXD86/RwwJ m 51.75 16.9816 85.364 18.136
BXD89/RwwJ m 29.0 19.6086 67.8141 0.0
BXD90/RwwJ m 8.0 24.0156 55.5373 0.0
BXD95/RwwJ m 22.5 24.0156 70.0373 0.0
BXD98/RwwJ m 0.5 24.0156 48.0373 0.0
C57BL/6J m 23.2 15.1888 53.2653 0.0
DBA/2J m 18.25 16.9816 51.864 0.0




  GWAS USING LINEAR MIXED MODELS