Project measure / variable:   Crowley1   vertical_actd120

ID, description, units MPD:39420   vertical_actd120   vertical activity, beam breaks, 60 min test   [n]  on day 120  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   26 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - vertical activity, beam breaks, 60 min test on day 120



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested26 strains
Mean of the strain means352   n
Median of the strain means214   n
SD of the strain means± 371
Coefficient of variation (CV)1.05
Min–max range of strain means5.00   –   1715   n
Mean sample size per strain5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 25 18873458.1676 754938.3267 10.7401 < 0.0001
Residuals 122 8575533.9067 70291.2615


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 5.0 6.74   8 2.38 1.35 -0.94
A/J m 21.6 13.8   5 6.18 0.639 6.0, 43.0 -0.89
AKR/J m 167.0 154.0   5 68.9 0.92 49.0, 407.0 -0.5
BALB/cByJ m 54.8 29.9   4 15.0 0.546 34.0, 99.0 -0.8
BTBR T+ Itpr3tf/J m 57.8 47.8   8 16.9 0.827 22.0, 166.0 -0.79
C3H/HeJ m 259.0 110.0   4 55.0 0.424 132.0, 365.0 -0.25
C57BL/6J m 552.0 284.0   5 127.0 0.515 377.0, 1057.0 0.54
C57BLKS/J m 95.4 58.5   5 26.2 0.613 40.0, 186.0 -0.69
CAST/EiJ m 630.0 310.0   5 139.0 0.492 251.0, 1018.0 0.75
CBA/J m 225.0 226.0   5 101.0 1.0 58.0, 621.0 -0.34
DBA/2J m 581.0 297.0   9 98.9 0.511 229.0, 1274.0 0.62
DDY/JclSidSeyFrkJ m 171.0 188.0   7 71.1 1.1 44.0, 579.0 -0.49
FVB/NJ m 1715.0 496.0   5 222.0 0.289 1221.0, 2549.0 3.68
KK/HlJ m 197.0 207.0   7 78.2 1.05 50.0, 650.0 -0.42
MA/MyJ m 731.0 511.0   6 209.0 0.699 27.0, 1370.0 1.02
MOLF/EiJ m 225.0 63.2   5 28.3 0.28 149.0, 316.0 -0.34
MRL/MpJ m 225.0 85.9   5 38.4 0.382 145.0, 321.0 -0.34
MSM/MsJ m 358.0 269.0   5 120.0 0.752 77.0, 692.0 0.02
NOD/ShiLtJ m 733.0 310.0   5 139.0 0.423 433.0, 1259.0 1.03
NON/ShiLtJ m 728.0 631.0   7 239.0 0.867 53.0, 1479.0 1.01
NZL/LtJ m 115.0 49.6   7 18.8 0.433 9.0, 161.0 -0.64
NZO/HlLtJ m 83.0 39.3   4 19.6 0.473 29.0, 123.0 -0.73
NZW/LacJ m 124.0 62.0   5 27.7 0.5 50.0, 222.0 -0.61
PWK/PhJ m 182.0 89.5   5 40.0 0.492 55.0, 284.0 -0.46
SJL/J m 202.0 76.0   4 38.0 0.377 111.0, 296.0 -0.4
SM/J m 712.0 346.0   8 122.0 0.486 131.0, 1360.0 0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 5.0 93.7358 190.5595 0.0
A/J m 21.6 118.5675 256.3162 0.0
AKR/J m 167.4 118.5675 402.1162 0.0
BALB/cByJ m 54.75 132.5625 317.1707 0.0
BTBR T+ Itpr3tf/J m 57.75 93.7358 243.3095 0.0
C3H/HeJ m 259.25 132.5625 521.6707 0.0
C57BL/6J m 552.0 118.5675 786.7162 317.2838
C57BLKS/J m 95.4 118.5675 330.1162 0.0
CAST/EiJ m 630.0 118.5675 864.7162 395.2838
CBA/J m 225.2 118.5675 459.9162 0.0
DBA/2J m 580.7778 88.375 755.7249 405.8306
DDY/JclSidSeyFrkJ m 170.8571 100.2078 369.2285 0.0
FVB/NJ m 1715.2 118.5675 1949.9162 1480.4838
KK/HlJ m 197.1429 100.2078 395.5143 0.0
MA/MyJ m 731.3333 108.2368 945.5989 517.0677
MOLF/EiJ m 225.4 118.5675 460.1162 0.0
MRL/MpJ m 224.8 118.5675 459.5162 0.0
MSM/MsJ m 357.8 118.5675 592.5162 123.0838
NOD/ShiLtJ m 733.4 118.5675 968.1162 498.6838
NON/ShiLtJ m 728.4286 100.2078 926.8 530.0572
NZL/LtJ m 114.5714 100.2078 312.9428 0.0
NZO/HlLtJ m 83.0 132.5625 345.4207 0.0
NZW/LacJ m 123.8 118.5675 358.5162 0.0
PWK/PhJ m 182.0 118.5675 416.7162 0.0
SJL/J m 201.5 132.5625 463.9207 0.0
SM/J m 712.375 93.7358 897.9345 526.8155




  GWAS USING LINEAR MIXED MODELS