Project measure / variable:   Crowley1   vertical_actd0

ID, description, units MPD:39417   vertical_actd0   vertical activity, beam breaks, 60 min test   [n]  on day 0  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - vertical activity, beam breaks, 60 min test on day 0



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means607   n
Median of the strain means458   n
SD of the strain means± 422
Coefficient of variation (CV)0.694
Min–max range of strain means5.00   –   1652   n
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 27328025.6413 1051077.9093 23.168 < 0.0001
Residuals 132 5988531.277 45367.6612


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 5.0 12.2   8 4.3 2.43 -1.43
A/J m 72.0 63.1   5 28.2 0.876 8.0, 139.0 -1.27
AKR/J m 238.0 185.0   5 82.8 0.777 26.0, 528.0 -0.88
BALB/cByJ m 157.0 138.0   5 61.6 0.879 29.0, 321.0 -1.07
BTBR T+ Itpr3tf/J m 401.0 287.0   8 101.0 0.715 20.0, 854.0 -0.49
C3H/HeJ m 356.0 137.0   5 61.4 0.385 225.0, 539.0 -0.6
C57BL/6J m 1035.0 130.0   5 58.4 0.126 890.0, 1240.0 1.01
C57BLKS/J m 442.0 89.1   5 39.8 0.202 345.0, 547.0 -0.39
CAST/EiJ m 884.0 133.0   5 59.3 0.15 656.0, 983.0 0.66
CBA/J m 458.0 175.0   5 78.2 0.382 198.0, 626.0 -0.35
DBA/2J m 664.0 176.0   9 58.5 0.264 392.0, 952.0 0.13
DDY/JclSidSeyFrkJ m 283.0 86.1   7 32.5 0.304 163.0, 379.0 -0.77
FVB/NJ m 1652.0 263.0   5 118.0 0.159 1242.0, 1950.0 2.48
KK/HlJ m 398.0 187.0   7 70.6 0.47 163.0, 767.0 -0.5
MA/MyJ m 1554.0 299.0   6 122.0 0.192 1065.0, 1870.0 2.25
MOLF/EiJ m 365.0 237.0   5 106.0 0.65 139.0, 725.0 -0.57
MRL/MpJ m 650.0 152.0   5 68.1 0.234 496.0, 901.0 0.1
MSM/MsJ m 170.0 89.6   6 36.6 0.527 57.0, 282.0 -1.04
NOD/ShiLtJ m 867.0 396.0   5 177.0 0.457 349.0, 1325.0 0.62
NON/ShiLtJ m 1113.0 348.0   8 123.0 0.312 641.0, 1707.0 1.2
NZL/LtJ m 724.0 106.0   8 37.4 0.146 519.0, 832.0 0.28
NZO/HlLtJ m 323.0 127.0   4 63.4 0.393 211.0, 504.0 -0.67
NZW/LacJ m 805.0 328.0   5 147.0 0.407 532.0, 1290.0 0.47
PWK/PhJ m 648.0 269.0   5 120.0 0.414 198.0, 879.0 0.1
SJL/J m 335.0 180.0   5 80.3 0.536 95.0, 584.0 -0.65
SM/J m 1149.0 231.0   8 81.5 0.201 836.0, 1597.0 1.28
WSB/EiJ m 648.0 321.0   5 144.0 0.495 234.0, 931.0 0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 5.0 75.3058 153.9622 0.0
A/J m 72.0 95.2551 260.424 0.0
AKR/J m 238.2 95.2551 426.624 49.776
BALB/cByJ m 156.6 95.2551 345.024 0.0
BTBR T+ Itpr3tf/J m 400.75 75.3058 549.7122 251.7878
C3H/HeJ m 356.4 95.2551 544.824 167.976
C57BL/6J m 1034.6 95.2551 1223.024 846.176
C57BLKS/J m 441.6 95.2551 630.024 253.176
CAST/EiJ m 883.8 95.2551 1072.224 695.376
CBA/J m 457.8 95.2551 646.224 269.376
DBA/2J m 664.1111 70.999 804.5541 523.6682
DDY/JclSidSeyFrkJ m 282.8571 80.5052 442.1045 123.6098
FVB/NJ m 1651.6 95.2551 1840.024 1463.176
KK/HlJ m 397.5714 80.5052 556.8188 238.3241
MA/MyJ m 1554.1667 86.9556 1726.1734 1382.1599
MOLF/EiJ m 364.6 95.2551 553.024 176.176
MRL/MpJ m 650.0 95.2551 838.424 461.576
MSM/MsJ m 169.8333 86.9556 341.8401 0.0
NOD/ShiLtJ m 866.6 95.2551 1055.024 678.176
NON/ShiLtJ m 1113.25 75.3058 1262.2122 964.2878
NZL/LtJ m 723.5 75.3058 872.4622 574.5378
NZO/HlLtJ m 322.75 106.4984 533.4144 112.0856
NZW/LacJ m 804.6 95.2551 993.024 616.176
PWK/PhJ m 648.0 95.2551 836.424 459.576
SJL/J m 335.4 95.2551 523.824 146.976
SM/J m 1149.0 75.3058 1297.9622 1000.0378
WSB/EiJ m 648.4 95.2551 836.824 459.976




  GWAS USING LINEAR MIXED MODELS