Project measure / variable:   Gupta2   area_kidneyL

ID, description, units MPD:39209   area_kidneyL   kidney planar surface area   [mm2]  left  
Data set, strains Gupta2   BXH   10 strains     sex: both     age: postnatal d1
Procedure organ dimensions
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  STRAIN COMPARISON PLOT
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Gupta2 - kidney planar surface area left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means4.69   mm2 4.85   mm2
Median of the strain means4.73   mm2 4.89   mm2
SD of the strain means± 0.275 ± 0.298
Coefficient of variation (CV)0.0587 0.0614
Min–max range of strain means4.20   –   5.09   mm2 4.23   –   5.19   mm2
Mean sample size per strain12.9   mice 14.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.3828 2.3828 4.3548 0.0379
strain 9 18.1008 2.0112 3.6756 0.0002
sex:strain 9 2.2898 0.2544 0.465 0.8972
Residuals 254 138.9815 0.5472


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXH10/TyJ f 5.09 0.611   13 0.169 0.12 4.07, 6.16 1.45
BXH10/TyJ m 5.13 0.887   14 0.237 0.173 3.47, 6.74 0.95
BXH11/TyJ f 4.73 0.676   7 0.255 0.143 3.91, 5.73 0.14
BXH11/TyJ m 4.99 0.343   6 0.14 0.0687 4.54, 5.43 0.48
BXH14/TyJ f 4.65 0.569   15 0.147 0.122 3.69, 5.51 -0.15
BXH14/TyJ m 5.14 0.66   16 0.165 0.128 4.01, 6.39 0.98
BXH19/TyJ f 4.2 0.638   23 0.133 0.152 3.25, 5.47 -1.79
BXH19/TyJ m 4.23 0.549   11 0.165 0.13 3.3, 4.96 -2.07
BXH2/TyJ f 4.94 1.02   8 0.359 0.206 3.49, 6.05 0.9
BXH2/TyJ m 5.19 1.13   12 0.327 0.218 3.5, 6.93 1.15
BXH4/TyJ f 4.85 0.951   15 0.245 0.196 3.46, 6.75 0.57
BXH4/TyJ m 4.84 0.613   11 0.185 0.127 3.77, 5.43 -0.02
BXH6/TyJ f 4.66 0.719   15 0.186 0.154 3.5, 5.52 -0.12
BXH6/TyJ m 4.61 0.791   15 0.204 0.171 2.9, 5.56 -0.8
BXH7/TyJ f 4.27 0.791   9 0.264 0.185 3.33, 5.83 -1.53
BXH7/TyJ m 4.69 0.958   16 0.239 0.204 3.52, 6.51 -0.53
BXH8/TyJ f 4.73 0.684   10 0.216 0.145 3.94, 5.98 0.14
BXH8/TyJ m 4.7 0.835   19 0.192 0.178 3.58, 6.24 -0.49
BXH9/TyJ f 4.8 0.499   18 0.118 0.104 3.51, 5.74 0.39
BXH9/TyJ m 4.95 0.47   21 0.103 0.0951 4.15, 5.93 0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ f 5.09 0.2052 5.494 4.686
BXH10/TyJ m 5.1329 0.1977 5.5222 4.7435
BXH11/TyJ f 4.7257 0.2796 5.2763 4.1751
BXH11/TyJ m 4.9933 0.302 5.588 4.3986
BXH14/TyJ f 4.652 0.191 5.0281 4.2759
BXH14/TyJ m 5.1406 0.1849 5.5048 4.7764
BXH19/TyJ f 4.1983 0.1542 4.502 3.8945
BXH19/TyJ m 4.2291 0.223 4.6683 3.7899
BXH2/TyJ f 4.9375 0.2615 5.4525 4.4225
BXH2/TyJ m 5.1942 0.2135 5.6147 4.7736
BXH4/TyJ f 4.85 0.191 5.2261 4.4739
BXH4/TyJ m 4.8373 0.223 5.2765 4.398
BXH6/TyJ f 4.6633 0.191 5.0395 4.2872
BXH6/TyJ m 4.6133 0.191 4.9895 4.2372
BXH7/TyJ f 4.2722 0.2466 4.7578 3.7866
BXH7/TyJ m 4.6937 0.1849 5.0579 4.3296
BXH8/TyJ f 4.733 0.2339 5.1937 4.2723
BXH8/TyJ m 4.6963 0.1697 5.0305 4.3621
BXH9/TyJ f 4.7994 0.1744 5.1428 4.4561
BXH9/TyJ m 4.9476 0.1614 5.2655 4.6297


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ both 5.1114 0.1425 5.392 4.8309
BXH11/TyJ both 4.8595 0.2058 5.2648 4.4543
BXH14/TyJ both 4.8963 0.1329 5.1581 4.6345
BXH19/TyJ both 4.2137 0.1356 4.4807 3.9467
BXH2/TyJ both 5.0658 0.1688 5.3983 4.7334
BXH4/TyJ both 4.8436 0.1468 5.1328 4.5545
BXH6/TyJ both 4.6383 0.1351 4.9043 4.3724
BXH7/TyJ both 4.483 0.1541 4.7865 4.1795
BXH8/TyJ both 4.7147 0.1445 4.9992 4.4301
BXH9/TyJ both 4.8735 0.1188 5.1075 4.6396




  GWAS USING LINEAR MIXED MODELS