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Project measure / variable:   Donahue3   latency_poke

ID, description, units MPD:37717   latency_poke   latency to first nose poke, 10 min test   [s]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Donahue3 - latency to first nose poke, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means23.3   s 27.5   s
Median of the strain means21.3   s 25.6   s
SD of the strain means± 7.75 ± 11.2
Coefficient of variation (CV)0.333 0.408
Min–max range of strain means9.78   –   39.5   s 9.74   –   54.2   s
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1638.1481 1638.1481 2.7772 0.0966
strain 21 21030.5868 1001.4565 1.6978 0.03
sex:strain 21 9908.2486 471.8214 0.7999 0.7198
Residuals 306 180495.7652 589.8554


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 39.5 50.3   8 17.8 1.27 7.7, 159.0 2.09
A/J m 40.8 44.3   8 15.7 1.09 1.8, 126.0 1.19
B6.A-Chr1 f 9.78 9.05   8 3.2 0.926 0.6, 28.4 -1.74
B6.A-Chr1 m 19.8 24.9   8 8.81 1.26 5.1, 80.8 -0.68
B6.A-Chr10 f 35.3 25.4   8 8.97 0.719 11.2, 87.6 1.55
B6.A-Chr10 m 39.2 27.8   8 9.82 0.708 10.8, 84.4 1.04
B6.A-Chr11 f 14.0 13.3   8 4.69 0.949 1.9, 45.0 -1.2
B6.A-Chr11 m 11.6 7.14   8 2.52 0.615 2.9, 23.9 -1.42
B6.A-Chr12 f 29.1 18.8   7 7.1 0.646 7.7, 64.4 0.75
B6.A-Chr12 m 54.2 34.6   8 12.2 0.638 10.8, 95.6 2.38
B6.A-Chr13 f 27.2 45.7   8 16.2 1.68 2.7, 136.0 0.5
B6.A-Chr13 m 40.2 36.4   8 12.9 0.905 2.6, 118.0 1.13
B6.A-Chr14 f 21.0 19.1   8 6.75 0.909 3.4, 55.2 -0.3
B6.A-Chr14 m 44.9 25.5   8 9.01 0.568 11.1, 81.8 1.55
B6.A-Chr15 f 21.6 17.0   8 5.99 0.786 2.6, 46.4 -0.22
B6.A-Chr15 m 27.8 28.0   8 9.91 1.01 1.5, 77.3 0.03
B6.A-Chr16 f 15.8 14.1   8 4.99 0.891 0.8, 39.4 -0.97
B6.A-Chr16 m 27.4 17.8   8 6.3 0.649 7.3, 53.1 -0.01
B6.A-Chr17 f 26.3 14.3   8 5.05 0.544 6.9, 46.9 0.39
B6.A-Chr17 m 15.4 16.9   8 5.98 1.1 1.7, 53.0 -1.08
B6.A-Chr18 f 17.2 14.2   8 5.01 0.824 2.3, 46.7 -0.79
B6.A-Chr18 m 25.7 14.4   8 5.09 0.56 5.8, 47.2 -0.16
B6.A-Chr19 f 16.7 13.2   8 4.68 0.794 0.3, 36.2 -0.85
B6.A-Chr19 m 32.8 19.2   8 6.8 0.586 6.2, 58.5 0.47
B6.A-Chr2 f 20.8 28.3   8 10.0 1.36 0.8, 76.8 -0.32
B6.A-Chr2 m 28.7 18.0   8 6.37 0.628 6.6, 60.0 0.11
B6.A-Chr3 f 14.5 13.4   8 4.74 0.924 1.8, 46.0 -1.13
B6.A-Chr3 m 23.1 20.0   8 7.07 0.866 2.0, 53.2 -0.39
B6.A-Chr4 f 24.0 15.8   8 5.6 0.658 4.5, 50.2 0.09
B6.A-Chr4 m 22.5 12.6   8 4.44 0.559 0.8, 36.6 -0.44
B6.A-Chr5 f 26.4 12.3   8 4.34 0.466 8.7, 43.6 0.4
B6.A-Chr5 m 25.6 8.05   8 2.85 0.314 9.2, 35.5 -0.17
B6.A-Chr6 f 32.0 32.4   8 11.5 1.01 0.1, 91.4 1.12
B6.A-Chr6 m 14.3 22.3   8 7.9 1.57 1.5, 68.5 -1.17
B6.A-Chr7 f 16.3 20.4   8 7.21 1.25 0.4, 56.2 -0.9
B6.A-Chr7 m 23.6 18.0   8 6.35 0.76 1.1, 51.3 -0.35
B6.A-Chr8 f 34.4 50.6   8 17.9 1.47 1.43
B6.A-Chr8 m 22.8 12.3   8 4.34 0.539 4.7, 45.8 -0.42
B6.A-Chr9 f 20.8 24.6   8 8.7 1.18 0.5, 73.0 -0.32
B6.A-Chr9 m 9.74 8.19   7 3.09 0.84 1.5, 25.4 -1.58
B6.A-ChrX f 21.0 21.6   8 7.65 1.03 5.4, 70.3 -0.3
B6.A-ChrX m 20.6 17.8   8 6.28 0.861 1.4, 57.2 -0.61
C57BL/6J f 28.8 20.0   8 7.06 0.692 3.0, 63.0 0.71
C57BL/6J m 34.0 28.3   8 10.0 0.832 4.5, 84.0 0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 39.5125 8.5867 56.409 22.616
A/J m 40.7875 8.5867 57.684 23.891
B6.A-Chr1 f 9.775 8.5867 26.6715 0.0
B6.A-Chr1 m 19.7625 8.5867 36.659 2.866
B6.A-Chr10 f 35.2625 8.5867 52.159 18.366
B6.A-Chr10 m 39.225 8.5867 56.1215 22.3285
B6.A-Chr11 f 13.975 8.5867 30.8715 0.0
B6.A-Chr11 m 11.6125 8.5867 28.509 0.0
B6.A-Chr12 f 29.0714 9.1796 47.1346 11.0083
B6.A-Chr12 m 54.2 8.5867 71.0965 37.3035
B6.A-Chr13 f 27.225 8.5867 44.1215 10.3285
B6.A-Chr13 m 40.1875 8.5867 57.084 23.291
B6.A-Chr14 f 21.025 8.5867 37.9215 4.1285
B6.A-Chr14 m 44.875 8.5867 61.7715 27.9785
B6.A-Chr15 f 21.5625 8.5867 38.459 4.666
B6.A-Chr15 m 27.8125 8.5867 44.709 10.916
B6.A-Chr16 f 15.8375 8.5867 32.734 0.0
B6.A-Chr16 m 27.45 8.5867 44.3465 10.5535
B6.A-Chr17 f 26.275 8.5867 43.1715 9.3785
B6.A-Chr17 m 15.3625 8.5867 32.259 0.0
B6.A-Chr18 f 17.1875 8.5867 34.084 0.291
B6.A-Chr18 m 25.6875 8.5867 42.584 8.791
B6.A-Chr19 f 16.6625 8.5867 33.559 0.0
B6.A-Chr19 m 32.8 8.5867 49.6965 15.9035
B6.A-Chr2 f 20.825 8.5867 37.7215 3.9285
B6.A-Chr2 m 28.675 8.5867 45.5715 11.7785
B6.A-Chr3 f 14.5125 8.5867 31.409 0.0
B6.A-Chr3 m 23.0875 8.5867 39.984 6.191
B6.A-Chr4 f 24.05 8.5867 40.9465 7.1535
B6.A-Chr4 m 22.475 8.5867 39.3715 5.5785
B6.A-Chr5 f 26.375 8.5867 43.2715 9.4785
B6.A-Chr5 m 25.625 8.5867 42.5215 8.7285
B6.A-Chr6 f 32.025 8.5867 48.9215 15.1285
B6.A-Chr6 m 14.275 8.5867 31.1715 0.0
B6.A-Chr7 f 16.275 8.5867 33.1715 0.0
B6.A-Chr7 m 23.625 8.5867 40.5215 6.7285
B6.A-Chr8 f 34.3875 8.5867 51.284 17.491
B6.A-Chr8 m 22.7625 8.5867 39.659 5.866
B6.A-Chr9 f 20.8 8.5867 37.6965 3.9035
B6.A-Chr9 m 9.7429 9.1796 27.806 0.0
B6.A-ChrX f 21.0 8.5867 37.8965 4.1035
B6.A-ChrX m 20.625 8.5867 37.5215 3.7285
C57BL/6J f 28.85 8.5867 45.7465 11.9535
C57BL/6J m 34.05 8.5867 50.9465 17.1535


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 40.15 6.0717 52.0976 28.2024
B6.A-Chr1 both 14.7688 6.0717 26.7164 2.8211
B6.A-Chr10 both 37.2437 6.0717 49.1914 25.2961
B6.A-Chr11 both 12.7938 6.0717 24.7414 0.8461
B6.A-Chr12 both 41.6357 6.2848 54.0027 29.2687
B6.A-Chr13 both 33.7063 6.0717 45.6539 21.7586
B6.A-Chr14 both 32.95 6.0717 44.8976 21.0024
B6.A-Chr15 both 24.6875 6.0717 36.6351 12.7399
B6.A-Chr16 both 21.6438 6.0717 33.5914 9.6961
B6.A-Chr17 both 20.8187 6.0717 32.7664 8.8711
B6.A-Chr18 both 21.4375 6.0717 33.3851 9.4899
B6.A-Chr19 both 24.7313 6.0717 36.6789 12.7836
B6.A-Chr2 both 24.75 6.0717 36.6976 12.8024
B6.A-Chr3 both 18.8 6.0717 30.7476 6.8524
B6.A-Chr4 both 23.2625 6.0717 35.2101 11.3149
B6.A-Chr5 both 26.0 6.0717 37.9476 14.0524
B6.A-Chr6 both 23.15 6.0717 35.0976 11.2024
B6.A-Chr7 both 19.95 6.0717 31.8976 8.0024
B6.A-Chr8 both 28.575 6.0717 40.5226 16.6274
B6.A-Chr9 both 15.2714 6.2848 27.6384 2.9044
B6.A-ChrX both 20.8125 6.0717 32.7601 8.8649
C57BL/6J both 31.45 6.0717 43.3976 19.5024




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA