Project measure / variable:   Donahue3   distance_perimeter

ID, description, units MPD:37716   distance_perimeter   distance traveled along perimeter of arena, thigmotaxis, 10 min test   [cm]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - distance traveled along perimeter of arena, thigmotaxis, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means1142   cm 1162   cm
Median of the strain means1170   cm 1203   cm
SD of the strain means± 304 ± 300
Coefficient of variation (CV)0.266 0.258
Min–max range of strain means135   –   1465   cm 97.5   –   1630   cm
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 33247.8437 33247.8437 0.4953 0.4821
strain 21 28119506.3665 1339024.1127 19.9478 < 0.0001
sex:strain 21 2519659.8437 119983.8021 1.7874 0.0192
Residuals 308 20674914.375 67126.3454


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 135.0 125.0   8 44.3 0.928 -3.32
A/J m 97.5 99.4   8 35.1 1.02 28.0, 319.0 -3.54
B6.A-Chr1 f 930.0 268.0   8 94.7 0.288 499.0, 1346.0 -0.7
B6.A-Chr1 m 1242.0 125.0   8 44.0 0.1 1084.0, 1482.0 0.27
B6.A-Chr10 f 699.0 154.0   8 54.3 0.22 571.0, 1051.0 -1.46
B6.A-Chr10 m 821.0 117.0   8 41.5 0.143 689.0, 1037.0 -1.14
B6.A-Chr11 f 1450.0 295.0   8 104.0 0.203 1044.0, 2003.0 1.01
B6.A-Chr11 m 1299.0 245.0   8 86.6 0.189 825.0, 1665.0 0.46
B6.A-Chr12 f 1111.0 307.0   8 109.0 0.277 652.0, 1416.0 -0.1
B6.A-Chr12 m 963.0 170.0   8 60.2 0.177 835.0, 1355.0 -0.66
B6.A-Chr13 f 1059.0 183.0   8 64.9 0.173 775.0, 1386.0 -0.27
B6.A-Chr13 m 1249.0 215.0   8 75.8 0.172 1012.0, 1605.0 0.29
B6.A-Chr14 f 1263.0 335.0   8 118.0 0.265 927.0, 1987.0 0.4
B6.A-Chr14 m 1275.0 219.0   8 77.4 0.172 942.0, 1546.0 0.38
B6.A-Chr15 f 1284.0 333.0   8 118.0 0.259 797.0, 1750.0 0.47
B6.A-Chr15 m 1047.0 166.0   8 58.5 0.158 818.0, 1291.0 -0.38
B6.A-Chr16 f 1229.0 264.0   8 93.5 0.215 786.0, 1464.0 0.29
B6.A-Chr16 m 1251.0 259.0   8 91.7 0.207 902.0, 1567.0 0.3
B6.A-Chr17 f 1438.0 340.0   8 120.0 0.236 1071.0, 2190.0 0.97
B6.A-Chr17 m 1171.0 229.0   8 80.8 0.195 1020.0, 1711.0 0.03
B6.A-Chr18 f 1079.0 303.0   8 107.0 0.281 729.0, 1726.0 -0.21
B6.A-Chr18 m 1166.0 195.0   8 69.0 0.167 910.0, 1513.0 0.01
B6.A-Chr19 f 1347.0 216.0   8 76.5 0.161 967.0, 1587.0 0.67
B6.A-Chr19 m 1630.0 346.0   8 122.0 0.212 1232.0, 2103.0 1.56
B6.A-Chr2 f 1366.0 372.0   8 132.0 0.272 1110.0, 2265.0 0.74
B6.A-Chr2 m 1515.0 272.0   8 96.1 0.179 1241.0, 1928.0 1.17
B6.A-Chr3 f 1108.0 179.0   8 63.5 0.162 830.0, 1283.0 -0.11
B6.A-Chr3 m 1056.0 263.0   8 93.1 0.249 656.0, 1401.0 -0.35
B6.A-Chr4 f 1082.0 442.0   8 156.0 0.408 681.0, 1989.0 -0.2
B6.A-Chr4 m 1218.0 222.0   8 78.6 0.183 861.0, 1595.0 0.19
B6.A-Chr5 f 1438.0 363.0   8 128.0 0.252 1180.0, 2275.0 0.97
B6.A-Chr5 m 1453.0 330.0   8 117.0 0.227 1008.0, 1971.0 0.97
B6.A-Chr6 f 1055.0 279.0   8 98.7 0.265 840.0, 1618.0 -0.29
B6.A-Chr6 m 980.0 168.0   8 59.4 0.171 763.0, 1243.0 -0.61
B6.A-Chr7 f 1465.0 264.0   8 93.5 0.18 1141.0, 1824.0 1.06
B6.A-Chr7 m 1390.0 333.0   8 118.0 0.24 1129.0, 2105.0 0.76
B6.A-Chr8 f 871.0 177.0   8 62.6 0.203 610.0, 1072.0 -0.89
B6.A-Chr8 m 1154.0 224.0   8 79.3 0.194 674.0, 1482.0 -0.03
B6.A-Chr9 f 1393.0 195.0   8 69.1 0.14 1172.0, 1692.0 0.83
B6.A-Chr9 m 1138.0 346.0   8 122.0 0.304 708.0, 1896.0 -0.08
B6.A-ChrX f 1099.0 266.0   8 93.9 0.242 770.0, 1475.0 -0.14
B6.A-ChrX m 1262.0 238.0   8 84.2 0.189 877.0, 1671.0 0.33
C57BL/6J f 1233.0 235.0   8 83.0 0.19 822.0, 1611.0 0.3
C57BL/6J m 1188.0 212.0   8 75.0 0.178 980.0, 1578.0 0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 135.125 91.6013 315.3685 0.0
A/J m 97.5 91.6013 277.7435 0.0
B6.A-Chr1 f 930.25 91.6013 1110.4935 750.0065
B6.A-Chr1 m 1241.5 91.6013 1421.7435 1061.2565
B6.A-Chr10 f 699.375 91.6013 879.6185 519.1315
B6.A-Chr10 m 820.875 91.6013 1001.1185 640.6315
B6.A-Chr11 f 1449.875 91.6013 1630.1185 1269.6315
B6.A-Chr11 m 1299.125 91.6013 1479.3685 1118.8815
B6.A-Chr12 f 1110.75 91.6013 1290.9935 930.5065
B6.A-Chr12 m 963.125 91.6013 1143.3685 782.8815
B6.A-Chr13 f 1059.25 91.6013 1239.4935 879.0065
B6.A-Chr13 m 1249.0 91.6013 1429.2435 1068.7565
B6.A-Chr14 f 1263.0 91.6013 1443.2435 1082.7565
B6.A-Chr14 m 1274.75 91.6013 1454.9935 1094.5065
B6.A-Chr15 f 1284.125 91.6013 1464.3685 1103.8815
B6.A-Chr15 m 1047.125 91.6013 1227.3685 866.8815
B6.A-Chr16 f 1228.625 91.6013 1408.8685 1048.3815
B6.A-Chr16 m 1250.75 91.6013 1430.9935 1070.5065
B6.A-Chr17 f 1438.0 91.6013 1618.2435 1257.7565
B6.A-Chr17 m 1170.625 91.6013 1350.8685 990.3815
B6.A-Chr18 f 1079.0 91.6013 1259.2435 898.7565
B6.A-Chr18 m 1165.75 91.6013 1345.9935 985.5065
B6.A-Chr19 f 1347.0 91.6013 1527.2435 1166.7565
B6.A-Chr19 m 1630.0 91.6013 1810.2435 1449.7565
B6.A-Chr2 f 1366.25 91.6013 1546.4935 1186.0065
B6.A-Chr2 m 1515.0 91.6013 1695.2435 1334.7565
B6.A-Chr3 f 1107.875 91.6013 1288.1185 927.6315
B6.A-Chr3 m 1055.875 91.6013 1236.1185 875.6315
B6.A-Chr4 f 1082.25 91.6013 1262.4935 902.0065
B6.A-Chr4 m 1218.25 91.6013 1398.4935 1038.0065
B6.A-Chr5 f 1438.5 91.6013 1618.7435 1258.2565
B6.A-Chr5 m 1453.25 91.6013 1633.4935 1273.0065
B6.A-Chr6 f 1055.0 91.6013 1235.2435 874.7565
B6.A-Chr6 m 979.625 91.6013 1159.8685 799.3815
B6.A-Chr7 f 1465.375 91.6013 1645.6185 1285.1315
B6.A-Chr7 m 1389.75 91.6013 1569.9935 1209.5065
B6.A-Chr8 f 871.125 91.6013 1051.3685 690.8815
B6.A-Chr8 m 1153.625 91.6013 1333.8685 973.3815
B6.A-Chr9 f 1393.25 91.6013 1573.4935 1213.0065
B6.A-Chr9 m 1137.625 91.6013 1317.8685 957.3815
B6.A-ChrX f 1098.875 91.6013 1279.1185 918.6315
B6.A-ChrX m 1262.125 91.6013 1442.3685 1081.8815
C57BL/6J f 1233.125 91.6013 1413.3685 1052.8815
C57BL/6J m 1188.375 91.6013 1368.6185 1008.1315


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 116.3125 64.7719 243.7639 0.0
B6.A-Chr1 both 1085.875 64.7719 1213.3264 958.4236
B6.A-Chr10 both 760.125 64.7719 887.5764 632.6736
B6.A-Chr11 both 1374.5 64.7719 1501.9514 1247.0486
B6.A-Chr12 both 1036.9375 64.7719 1164.3889 909.4861
B6.A-Chr13 both 1154.125 64.7719 1281.5764 1026.6736
B6.A-Chr14 both 1268.875 64.7719 1396.3264 1141.4236
B6.A-Chr15 both 1165.625 64.7719 1293.0764 1038.1736
B6.A-Chr16 both 1239.6875 64.7719 1367.1389 1112.2361
B6.A-Chr17 both 1304.3125 64.7719 1431.7639 1176.8611
B6.A-Chr18 both 1122.375 64.7719 1249.8264 994.9236
B6.A-Chr19 both 1488.5 64.7719 1615.9514 1361.0486
B6.A-Chr2 both 1440.625 64.7719 1568.0764 1313.1736
B6.A-Chr3 both 1081.875 64.7719 1209.3264 954.4236
B6.A-Chr4 both 1150.25 64.7719 1277.7014 1022.7986
B6.A-Chr5 both 1445.875 64.7719 1573.3264 1318.4236
B6.A-Chr6 both 1017.3125 64.7719 1144.7639 889.8611
B6.A-Chr7 both 1427.5625 64.7719 1555.0139 1300.1111
B6.A-Chr8 both 1012.375 64.7719 1139.8264 884.9236
B6.A-Chr9 both 1265.4375 64.7719 1392.8889 1137.9861
B6.A-ChrX both 1180.5 64.7719 1307.9514 1053.0486
C57BL/6J both 1210.75 64.7719 1338.2014 1083.2986




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA