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Project measure / variable:   Donahue3   duration_stereotypic

ID, description, units MPD:37711   duration_stereotypic   duration of stereotypic behavior, repetitive activity, 10 min test   [s]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - duration of stereotypic behavior, repetitive activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means132   s 140   s
Median of the strain means136   s 146   s
SD of the strain means± 23.0 ± 23.5
Coefficient of variation (CV)0.174 0.168
Min–max range of strain means47.9   –   159   s 54.5   –   164   s
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5757.4914 5757.4914 6.7274 0.0099
strain 21 174330.5574 8301.4551 9.6999 < 0.0001
sex:strain 21 7314.9661 348.3317 0.407 0.9915
Residuals 308 263594.385 855.8259


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 47.9 17.1   8 6.06 0.358 36.1, 86.8 -3.66
A/J m 54.5 27.2   8 9.62 0.499 20.2, 113.0 -3.64
B6.A-Chr1 f 119.0 25.7   8 9.09 0.217 76.8, 150.0 -0.57
B6.A-Chr1 m 117.0 25.0   8 8.84 0.213 82.2, 155.0 -0.98
B6.A-Chr10 f 132.0 32.3   8 11.4 0.245 94.2, 180.0 0.0
B6.A-Chr10 m 133.0 23.7   8 8.37 0.178 106.0, 168.0 -0.3
B6.A-Chr11 f 136.0 37.0   8 13.1 0.272 84.5, 185.0 0.17
B6.A-Chr11 m 140.0 25.4   8 8.98 0.181 106.0, 174.0 0.0
B6.A-Chr12 f 129.0 27.1   8 9.59 0.211 106.0, 188.0 -0.13
B6.A-Chr12 m 164.0 19.3   8 6.82 0.118 139.0, 204.0 1.02
B6.A-Chr13 f 143.0 25.5   8 9.02 0.178 88.5, 175.0 0.48
B6.A-Chr13 m 145.0 21.7   8 7.66 0.149 111.0, 179.0 0.21
B6.A-Chr14 f 138.0 35.7   8 12.6 0.258 97.4, 202.0 0.26
B6.A-Chr14 m 142.0 48.9   8 17.3 0.346 90.5, 229.0 0.08
B6.A-Chr15 f 159.0 26.3   8 9.31 0.165 129.0, 202.0 1.17
B6.A-Chr15 m 161.0 26.0   8 9.18 0.161 127.0, 209.0 0.89
B6.A-Chr16 f 152.0 33.9   8 12.0 0.224 99.4, 189.0 0.87
B6.A-Chr16 m 149.0 28.3   8 10.0 0.19 113.0, 190.0 0.38
B6.A-Chr17 f 142.0 38.3   8 13.6 0.27 70.2, 197.0 0.43
B6.A-Chr17 m 152.0 24.2   8 8.56 0.159 114.0, 191.0 0.51
B6.A-Chr18 f 117.0 14.4   8 5.08 0.123 99.4, 140.0 -0.65
B6.A-Chr18 m 123.0 16.9   8 5.99 0.138 99.1, 144.0 -0.72
B6.A-Chr19 f 145.0 44.1   8 15.6 0.303 97.6, 222.0 0.56
B6.A-Chr19 m 151.0 24.1   8 8.52 0.16 133.0, 207.0 0.47
B6.A-Chr2 f 108.0 28.8   8 10.2 0.267 75.6, 151.0 -1.05
B6.A-Chr2 m 121.0 28.6   8 10.1 0.237 89.3, 175.0 -0.81
B6.A-Chr3 f 121.0 31.6   8 11.2 0.262 64.0, 177.0 -0.48
B6.A-Chr3 m 140.0 31.5   8 11.1 0.224 97.8, 203.0 0.0
B6.A-Chr4 f 128.0 29.6   8 10.5 0.232 94.8, 184.0 -0.18
B6.A-Chr4 m 122.0 20.3   8 7.17 0.167 106.0, 170.0 -0.77
B6.A-Chr5 f 149.0 30.3   8 10.7 0.204 98.7, 192.0 0.74
B6.A-Chr5 m 161.0 28.9   8 10.2 0.18 122.0, 201.0 0.89
B6.A-Chr6 f 125.0 31.0   8 11.0 0.249 95.4, 171.0 -0.31
B6.A-Chr6 m 142.0 21.2   8 7.5 0.149 105.0, 168.0 0.08
B6.A-Chr7 f 149.0 30.9   8 10.9 0.207 114.0, 198.0 0.74
B6.A-Chr7 m 162.0 28.1   8 9.93 0.174 122.0, 203.0 0.93
B6.A-Chr8 f 129.0 32.0   8 11.3 0.249 86.8, 173.0 -0.13
B6.A-Chr8 m 147.0 35.0   8 12.4 0.237 111.0, 221.0 0.3
B6.A-Chr9 f 137.0 31.4   8 11.1 0.23 90.9, 171.0 0.22
B6.A-Chr9 m 150.0 30.1   8 10.7 0.201 115.0, 202.0 0.42
B6.A-ChrX f 154.0 20.5   8 7.26 0.133 114.0, 181.0 0.96
B6.A-ChrX m 152.0 34.6   8 12.2 0.228 113.0, 216.0 0.51
C57BL/6J f 145.0 25.7   8 9.09 0.178 102.0, 172.0 0.56
C57BL/6J m 152.0 34.3   8 12.1 0.225 103.0, 202.0 0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 47.9 10.343 68.2519 27.5481
A/J m 54.5375 10.343 74.8894 34.1856
B6.A-Chr1 f 118.5125 10.343 138.8644 98.1606
B6.A-Chr1 m 117.2375 10.343 137.5894 96.8856
B6.A-Chr10 f 131.85 10.343 152.2019 111.4981
B6.A-Chr10 m 133.1625 10.343 153.5144 112.8106
B6.A-Chr11 f 135.8375 10.343 156.1894 115.4856
B6.A-Chr11 m 140.35 10.343 160.7019 119.9981
B6.A-Chr12 f 128.625 10.343 148.9769 108.2731
B6.A-Chr12 m 163.6125 10.343 183.9644 143.2606
B6.A-Chr13 f 142.9875 10.343 163.3394 122.6356
B6.A-Chr13 m 145.2125 10.343 165.5644 124.8606
B6.A-Chr14 f 138.35 10.343 158.7019 117.9981
B6.A-Chr14 m 141.5125 10.343 161.8644 121.1606
B6.A-Chr15 f 159.1625 10.343 179.5144 138.8106
B6.A-Chr15 m 161.4 10.343 181.7519 141.0481
B6.A-Chr16 f 151.5125 10.343 171.8644 131.1606
B6.A-Chr16 m 149.0375 10.343 169.3894 128.6856
B6.A-Chr17 f 142.275 10.343 162.6269 121.9231
B6.A-Chr17 m 152.05 10.343 172.4019 131.6981
B6.A-Chr18 f 117.0 10.343 137.3519 96.6481
B6.A-Chr18 m 122.8125 10.343 143.1644 102.4606
B6.A-Chr19 f 145.325 10.343 165.6769 124.9731
B6.A-Chr19 m 150.7125 10.343 171.0644 130.3606
B6.A-Chr2 f 107.8625 10.343 128.2144 87.5106
B6.A-Chr2 m 120.7 10.343 141.0519 100.3481
B6.A-Chr3 f 120.5625 10.343 140.9144 100.2106
B6.A-Chr3 m 140.2625 10.343 160.6144 119.9106
B6.A-Chr4 f 127.8125 10.343 148.1644 107.4606
B6.A-Chr4 m 121.5625 10.343 141.9144 101.2106
B6.A-Chr5 f 148.625 10.343 168.9769 128.2731
B6.A-Chr5 m 160.5125 10.343 180.8644 140.1606
B6.A-Chr6 f 124.6375 10.343 144.9894 104.2856
B6.A-Chr6 m 142.3375 10.343 162.6894 121.9856
B6.A-Chr7 f 149.4125 10.343 169.7644 129.0606
B6.A-Chr7 m 161.7875 10.343 182.1394 141.4356
B6.A-Chr8 f 128.6875 10.343 149.0394 108.3356
B6.A-Chr8 m 147.4625 10.343 167.8144 127.1106
B6.A-Chr9 f 136.925 10.343 157.2769 116.5731
B6.A-Chr9 m 150.225 10.343 170.5769 129.8731
B6.A-ChrX f 153.775 10.343 174.1269 133.4231
B6.A-ChrX m 151.5125 10.343 171.8644 131.1606
C57BL/6J f 144.575 10.343 164.9269 124.2231
C57BL/6J m 152.1625 10.343 172.5144 131.8106


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 51.2187 7.3136 65.6097 36.8278
B6.A-Chr1 both 117.875 7.3136 132.266 103.484
B6.A-Chr10 both 132.5063 7.3136 146.8972 118.1153
B6.A-Chr11 both 138.0937 7.3136 152.4847 123.7028
B6.A-Chr12 both 146.1187 7.3136 160.5097 131.7278
B6.A-Chr13 both 144.1 7.3136 158.491 129.709
B6.A-Chr14 both 139.9313 7.3136 154.3222 125.5403
B6.A-Chr15 both 160.2812 7.3136 174.6722 145.8903
B6.A-Chr16 both 150.275 7.3136 164.666 135.884
B6.A-Chr17 both 147.1625 7.3136 161.5535 132.7715
B6.A-Chr18 both 119.9063 7.3136 134.2972 105.5153
B6.A-Chr19 both 148.0188 7.3136 162.4097 133.6278
B6.A-Chr2 both 114.2813 7.3136 128.6722 99.8903
B6.A-Chr3 both 130.4125 7.3136 144.8035 116.0215
B6.A-Chr4 both 124.6875 7.3136 139.0785 110.2965
B6.A-Chr5 both 154.5688 7.3136 168.9597 140.1778
B6.A-Chr6 both 133.4875 7.3136 147.8785 119.0965
B6.A-Chr7 both 155.6 7.3136 169.991 141.209
B6.A-Chr8 both 138.075 7.3136 152.466 123.684
B6.A-Chr9 both 143.575 7.3136 157.966 129.184
B6.A-ChrX both 152.6437 7.3136 167.0347 138.2528
C57BL/6J both 148.3688 7.3136 162.7597 133.9778




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA