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Project measure / variable:   Vinyard1   age

ID, description, units MPD:30480   age   age at test (local parameter)   [wks]  
Data set, strains Vinyard1   inbred   21 strains     sex: both
Procedure colony observation
Ontology mappings


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  STRAIN COMPARISON PLOT
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Vinyard1 - age at test (local parameter)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means9.31   wks 9.65   wks
Median of the strain means9.00   wks 10.0   wks
SD of the strain means± 0.476 ± 0.654
Coefficient of variation (CV)0.0511 0.0678
Min–max range of strain means9.00   –   10.2   wks 9.00   –   11.0   wks
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11.9139 11.9139 169.231 < 0.0001
strain 20 85.7868 4.2893 60.9281 < 0.0001
sex:strain 20 44.0481 2.2024 31.2841 < 0.0001
Residuals 375 26.4 0.0704


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
129S1/SvImJ m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
A/J f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
A/J m 11.0 0.0   10 0.0 0.0 11.0, 11.0 2.07
AKR/J f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
AKR/J m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
BALB/cByJ f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
BALB/cByJ m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
BTBR T+ Itpr3tf/J f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
BTBR T+ Itpr3tf/J m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
C3H/HeJ f 10.0 0.0   10 0.0 0.0 10.0, 10.0 1.44
C3H/HeJ m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
C57BL/10J f 10.0 0.0   10 0.0 0.0 10.0, 10.0 1.44
C57BL/10J m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
C57BL/6J f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
C57BL/6J m 9.6 0.516   10 0.163 0.0538 9.0, 10.0 -0.07
C57BLKS/J f 10.0 0.0   10 0.0 0.0 10.0, 10.0 1.44
C57BLKS/J m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
C57L/J f 9.4 0.516   10 0.163 0.0549 9.0, 10.0 0.18
C57L/J m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
C58/J f 9.0 0.0   8 0.0 0.0 9.0, 9.0 -0.66
C58/J m 9.0 0.0   8 0.0 0.0 9.0, 9.0 -0.99
CAST/EiJ f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
CAST/EiJ m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
CBA/J f 10.2 1.55   10 0.49 0.152 9.0, 12.0 1.86
CBA/J m 11.0 0.0   10 0.0 0.0 11.0, 11.0 2.07
DBA/2J f 10.0 0.0   10 0.0 0.0 10.0, 10.0 1.44
DBA/2J m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
FVB/NJ f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
FVB/NJ m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
NOD/ShiLtJ f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
NOD/ShiLtJ m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
NON/ShiLtJ f 9.0 0.0   11 0.0 0.0 9.0, 9.0 -0.66
NON/ShiLtJ m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
NZB/BlNJ f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
NZB/BlNJ m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54
PL/J f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
PL/J m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
RIIIS/J f 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.66
RIIIS/J m 9.0 0.0   10 0.0 0.0 9.0, 9.0 -0.99
SJL/J f 10.0 0.0   10 0.0 0.0 10.0, 10.0 1.44
SJL/J m 10.0 0.0   10 0.0 0.0 10.0, 10.0 0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.0 0.0839 9.165 8.835
129S1/SvImJ m 10.0 0.0839 10.165 9.835
A/J f 9.0 0.0839 9.165 8.835
A/J m 11.0 0.0839 11.165 10.835
AKR/J f 9.0 0.0839 9.165 8.835
AKR/J m 10.0 0.0839 10.165 9.835
BALB/cByJ f 9.0 0.0839 9.165 8.835
BALB/cByJ m 10.0 0.0839 10.165 9.835
BTBR T+ Itpr3tf/J f 9.0 0.0839 9.165 8.835
BTBR T+ Itpr3tf/J m 10.0 0.0839 10.165 9.835
C3H/HeJ f 10.0 0.0839 10.165 9.835
C3H/HeJ m 10.0 0.0839 10.165 9.835
C57BL/10J f 10.0 0.0839 10.165 9.835
C57BL/10J m 10.0 0.0839 10.165 9.835
C57BL/6J f 9.0 0.0839 9.165 8.835
C57BL/6J m 9.6 0.0839 9.765 9.435
C57BLKS/J f 10.0 0.0839 10.165 9.835
C57BLKS/J m 10.0 0.0839 10.165 9.835
C57L/J f 9.4 0.0839 9.565 9.235
C57L/J m 9.0 0.0839 9.165 8.835
C58/J f 9.0 0.0938 9.1845 8.8155
C58/J m 9.0 0.0938 9.1845 8.8155
CAST/EiJ f 9.0 0.0839 9.165 8.835
CAST/EiJ m 9.0 0.0839 9.165 8.835
CBA/J f 10.2 0.0839 10.365 10.035
CBA/J m 11.0 0.0839 11.165 10.835
DBA/2J f 10.0 0.0839 10.165 9.835
DBA/2J m 9.0 0.0839 9.165 8.835
FVB/NJ f 9.0 0.0839 9.165 8.835
FVB/NJ m 9.0 0.0839 9.165 8.835
NOD/ShiLtJ f 9.0 0.0839 9.165 8.835
NOD/ShiLtJ m 9.0 0.0839 9.165 8.835
NON/ShiLtJ f 9.0 0.08 9.1573 8.8427
NON/ShiLtJ m 9.0 0.0839 9.165 8.835
NZB/BlNJ f 9.0 0.0839 9.165 8.835
NZB/BlNJ m 10.0 0.0839 10.165 9.835
PL/J f 9.0 0.0839 9.165 8.835
PL/J m 9.0 0.0839 9.165 8.835
RIIIS/J f 9.0 0.0839 9.165 8.835
RIIIS/J m 9.0 0.0839 9.165 8.835
SJL/J f 10.0 0.0839 10.165 9.835
SJL/J m 10.0 0.0839 10.165 9.835


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.5 0.0593 9.6167 9.3833
A/J both 10.0 0.0593 10.1167 9.8833
AKR/J both 9.5 0.0593 9.6167 9.3833
BALB/cByJ both 9.5 0.0593 9.6167 9.3833
BTBR T+ Itpr3tf/J both 9.5 0.0593 9.6167 9.3833
C3H/HeJ both 10.0 0.0593 10.1167 9.8833
C57BL/10J both 10.0 0.0593 10.1167 9.8833
C57BL/6J both 9.3 0.0593 9.4167 9.1833
C57BLKS/J both 10.0 0.0593 10.1167 9.8833
C57L/J both 9.2 0.0593 9.3167 9.0833
C58/J both 9.0 0.0663 9.1304 8.8696
CAST/EiJ both 9.0 0.0593 9.1167 8.8833
CBA/J both 10.6 0.0593 10.7167 10.4833
DBA/2J both 9.5 0.0593 9.6167 9.3833
FVB/NJ both 9.0 0.0593 9.1167 8.8833
NOD/ShiLtJ both 9.0 0.0593 9.1167 8.8833
NON/ShiLtJ both 9.0 0.058 9.114 8.886
NZB/BlNJ both 9.5 0.0593 9.6167 9.3833
PL/J both 9.0 0.0593 9.1167 8.8833
RIIIS/J both 9.0 0.0593 9.1167 8.8833
SJL/J both 10.0 0.0593 10.1167 9.8833




  GWAS USING LINEAR MIXED MODELS