Project measure / variable:   Vinyard1   condyle_length

ID, description, units MPD:30404   condyle_length   length of rostral-caudal condylar articular surface (condyle length)   [mm]  
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
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  STRAIN COMPARISON PLOT
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Vinyard1 - length of rostral-caudal condylar articular surface (condyle length)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means1.71   mm 1.63   mm
Median of the strain means1.73   mm 1.66   mm
SD of the strain means± 0.151 ± 0.166
Coefficient of variation (CV)0.0886 0.102
Min–max range of strain means1.50   –   1.98   mm 1.36   –   1.96   mm
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.5611 0.5611 26.9238 < 0.0001
strain 20 9.6749 0.4837 23.2106 < 0.0001
sex:strain 20 0.453 0.0227 1.0868 0.3609
Residuals 372 7.7531 0.0208


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.81 0.183   10 0.0579 0.101 1.53, 2.15 0.69
129S1/SvImJ m 1.76 0.117   10 0.0369 0.0663 1.64, 1.95 0.77
A/J f 1.56 0.126   10 0.0398 0.0807 1.35, 1.74 -0.96
A/J m 1.5 0.154   10 0.0488 0.103 1.25, 1.77 -0.79
AKR/J f 1.73 0.105   9 0.035 0.0608 1.55, 1.89 0.16
AKR/J m 1.52 0.167   10 0.0527 0.11 1.17, 1.77 -0.67
BALB/cByJ f 1.71 0.126   10 0.0399 0.0741 1.46, 1.92 0.03
BALB/cByJ m 1.66 0.216   10 0.0682 0.13 1.38, 2.14 0.17
BTBR T+ Itpr3tf/J f 1.98 0.203   10 0.0642 0.102 1.65, 2.28 1.82
BTBR T+ Itpr3tf/J m 1.9 0.163   10 0.0515 0.0857 1.64, 2.2 1.61
C3H/HeJ f 1.79 0.0995   10 0.0315 0.0555 1.64, 1.93 0.56
C3H/HeJ m 1.76 0.139   10 0.0441 0.0791 1.59, 1.95 0.77
C57BL/10J f 1.54 0.143   10 0.0452 0.0927 1.27, 1.76 -1.09
C57BL/10J m 1.42 0.13   10 0.0411 0.0913 1.17, 1.63 -1.27
C57BL/6J f 1.68 0.117   10 0.0369 0.0694 1.49, 1.87 -0.17
C57BL/6J m 1.65 0.137   9 0.0456 0.083 1.46, 1.82 0.11
C57BLKS/J f 1.53 0.152   10 0.0481 0.0997 1.31, 1.77 -1.16
C57BLKS/J m 1.45 0.109   10 0.0346 0.0753 1.27, 1.59 -1.09
C57L/J f 1.77 0.101   10 0.032 0.0572 1.53, 1.86 0.43
C57L/J m 1.73 0.0847   10 0.0268 0.049 1.58, 1.87 0.59
C58/J f 1.76 0.0913   8 0.0323 0.0519 1.61, 1.86 0.36
C58/J m 1.72 0.0792   8 0.028 0.046 1.59, 1.85 0.53
CAST/EiJ f 1.51 0.0993   10 0.0314 0.0659 1.32, 1.66 -1.29
CAST/EiJ m 1.4 0.104   10 0.0329 0.0741 1.2, 1.54 -1.39
CBA/J f 1.87 0.159   10 0.0501 0.0846 1.7, 2.24 1.09
CBA/J m 1.76 0.164   10 0.0518 0.0928 1.41, 1.93 0.77
DBA/2J f 1.5 0.182   10 0.0577 0.121 1.29, 1.81 -1.36
DBA/2J m 1.36 0.132   10 0.0417 0.0966 1.19, 1.57 -1.64
FVB/NJ f 1.77 0.16   10 0.0507 0.0905 1.56, 2.01 0.43
FVB/NJ m 1.72 0.111   10 0.0352 0.0648 1.51, 1.86 0.53
NOD/ShiLtJ f 1.95 0.191   10 0.0606 0.098 1.58, 2.12 1.62
NOD/ShiLtJ m 1.72 0.224   10 0.0708 0.13 1.38, 2.11 0.53
NON/ShiLtJ f 1.89 0.164   11 0.0494 0.0868 1.48, 2.04 1.22
NON/ShiLtJ m 1.96 0.116   10 0.0368 0.0593 1.73, 2.11 1.97
NZB/BlNJ f 1.66 0.0828   10 0.0262 0.0497 1.5, 1.8 -0.3
NZB/BlNJ m 1.57 0.179   10 0.0566 0.114 1.29, 1.88 -0.37
PL/J f 1.51 0.147   10 0.0464 0.0972 1.24, 1.71 -1.29
PL/J m 1.51 0.0993   9 0.0331 0.0659 1.4, 1.72 -0.73
RIIIS/J f 1.75 0.141   10 0.0446 0.0806 1.53, 1.96 0.3
RIIIS/J m 1.73 0.154   10 0.0488 0.0891 1.45, 1.94 0.59
SJL/J f 1.54 0.145   10 0.0457 0.0939 1.22, 1.7 -1.09
SJL/J m 1.47 0.145   10 0.0457 0.0985 1.16, 1.62 -0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.814 0.0457 1.9038 1.7242
129S1/SvImJ m 1.759 0.0457 1.8488 1.6692
A/J f 1.56 0.0457 1.6498 1.4702
A/J m 1.504 0.0457 1.5938 1.4142
AKR/J f 1.7278 0.0481 1.8224 1.6332
AKR/J m 1.518 0.0457 1.6078 1.4282
BALB/cByJ f 1.706 0.0457 1.7958 1.6162
BALB/cByJ m 1.657 0.0457 1.7468 1.5672
BTBR T+ Itpr3tf/J f 1.985 0.0457 2.0748 1.8952
BTBR T+ Itpr3tf/J m 1.902 0.0457 1.9918 1.8122
C3H/HeJ f 1.792 0.0457 1.8818 1.7022
C3H/HeJ m 1.763 0.0457 1.8528 1.6732
C57BL/10J f 1.542 0.0457 1.6318 1.4522
C57BL/10J m 1.424 0.0457 1.5138 1.3342
C57BL/6J f 1.68 0.0457 1.7698 1.5902
C57BL/6J m 1.6467 0.0481 1.7413 1.552
C57BLKS/J f 1.527 0.0457 1.6168 1.4372
C57BLKS/J m 1.451 0.0457 1.5408 1.3612
C57L/J f 1.768 0.0457 1.8578 1.6782
C57L/J m 1.728 0.0457 1.8178 1.6382
C58/J f 1.7587 0.051 1.8591 1.6584
C58/J m 1.7225 0.051 1.8229 1.6221
CAST/EiJ f 1.508 0.0457 1.5978 1.4182
CAST/EiJ m 1.402 0.0457 1.4918 1.3122
CBA/J f 1.873 0.0457 1.9628 1.7832
CBA/J m 1.765 0.0457 1.8548 1.6752
DBA/2J f 1.502 0.0457 1.5918 1.4122
DBA/2J m 1.364 0.0457 1.4538 1.2742
FVB/NJ f 1.77 0.0457 1.8598 1.6802
FVB/NJ m 1.718 0.0457 1.8078 1.6282
NOD/ShiLtJ f 1.953 0.0457 2.0428 1.8632
NOD/ShiLtJ m 1.72 0.0457 1.8098 1.6302
NON/ShiLtJ f 1.8864 0.0435 1.972 1.8008
NON/ShiLtJ m 1.962 0.0457 2.0518 1.8722
NZB/BlNJ f 1.664 0.0457 1.7538 1.5742
NZB/BlNJ m 1.569 0.0457 1.6588 1.4792
PL/J f 1.511 0.0457 1.6008 1.4212
PL/J m 1.5078 0.0481 1.6024 1.4132
RIIIS/J f 1.75 0.0457 1.8398 1.6602
RIIIS/J m 1.733 0.0457 1.8228 1.6432
SJL/J f 1.54 0.0457 1.6298 1.4502
SJL/J m 1.468 0.0457 1.5578 1.3782


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.7865 0.0323 1.85 1.723
A/J both 1.532 0.0323 1.5955 1.4685
AKR/J both 1.6229 0.0332 1.6881 1.5577
BALB/cByJ both 1.6815 0.0323 1.745 1.618
BTBR T+ Itpr3tf/J both 1.9435 0.0323 2.007 1.88
C3H/HeJ both 1.7775 0.0323 1.841 1.714
C57BL/10J both 1.483 0.0323 1.5465 1.4195
C57BL/6J both 1.6633 0.0332 1.7285 1.5981
C57BLKS/J both 1.489 0.0323 1.5525 1.4255
C57L/J both 1.748 0.0323 1.8115 1.6845
C58/J both 1.7406 0.0361 1.8116 1.6697
CAST/EiJ both 1.455 0.0323 1.5185 1.3915
CBA/J both 1.819 0.0323 1.8825 1.7555
DBA/2J both 1.433 0.0323 1.4965 1.3695
FVB/NJ both 1.744 0.0323 1.8075 1.6805
NOD/ShiLtJ both 1.8365 0.0323 1.9 1.773
NON/ShiLtJ both 1.9242 0.0315 1.9862 1.8622
NZB/BlNJ both 1.6165 0.0323 1.68 1.553
PL/J both 1.5094 0.0332 1.5746 1.4442
RIIIS/J both 1.7415 0.0323 1.805 1.678
SJL/J both 1.504 0.0323 1.5675 1.4405




  GWAS USING LINEAR MIXED MODELS