Project measure / variable:   Yuan3   Phos_M18

ID, description, units MPD:24438   Phos_M18   phosphorus (serum P)   [mg/dL]  at age 18mo  
Data set, strains Yuan3   inbred   29 strains     sex: both     age: 78wks
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  STRAIN COMPARISON PLOT
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Yuan3 - phosphorus (serum P) at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains27 strains
Mean of the strain means6.07   mg/dL 6.76   mg/dL
Median of the strain means6.04   mg/dL 6.65   mg/dL
SD of the strain means± 0.815 ± 0.888
Coefficient of variation (CV)0.134 0.131
Min–max range of strain means4.57   –   7.82   mg/dL 5.18   –   9.00   mg/dL
Mean sample size per strain7.0   mice 6.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 38.7081 38.7081 38.4755 < 0.0001
strain 26 177.5835 6.8301 6.7891 < 0.0001
sex:strain 26 48.9173 1.8814 1.8701 0.0074
Residuals 300 301.814 1.006


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.57 0.808   7 0.305 0.177 3.3, 5.8 -1.84
129S1/SvImJ m 5.66 0.936   7 0.354 0.165 4.9, 7.6 -1.24
A/J f 5.17 0.792   8 0.28 0.153 4.3, 6.7 -1.1
A/J m 7.3 1.21   6 0.495 0.166 5.5, 8.5 0.61
BALB/cByJ f 5.9 0.283   7 0.107 0.0479 5.5, 6.4 -0.21
BALB/cByJ m 6.72 1.1   5 0.492 0.164 5.5, 8.5 -0.05
BTBR T+ Itpr3tf/J f 6.42 0.866   6 0.353 0.135 5.1, 7.5 0.43
BTBR T+ Itpr3tf/J m 6.4 0.886   5 0.396 0.138 5.4, 7.7 -0.41
BUB/BnJ f 5.74 1.24   5 0.554 0.216 4.6, 7.3 -0.4
C3H/HeJ f 6.05 1.62   6 0.663 0.268 4.7, 9.2 -0.02
C3H/HeJ m 6.14 1.61   8 0.569 0.262 4.5, 9.1 -0.7
C57BL/10J f 6.97 1.02   7 0.387 0.147 5.6, 8.6 1.11
C57BL/10J m 7.49 0.855   7 0.323 0.114 6.0, 8.7 0.82
C57BL/6J f 7.11 0.766   8 0.271 0.108 5.8, 8.2 1.28
C57BL/6J m 8.04 0.683   7 0.258 0.0849 7.1, 9.1 1.44
C57BLKS/J f 6.34 0.826   7 0.312 0.13 4.6, 6.9 0.33
C57BLKS/J m 6.63 0.594   7 0.224 0.0896 5.7, 7.6 -0.15
C57BR/cdJ f 6.29 0.617   8 0.218 0.0982 5.2, 6.9 0.27
C57BR/cdJ m 6.42 0.93   8 0.329 0.145 4.8, 7.7 -0.38
C57L/J f 6.05 0.65   8 0.23 0.107 4.8, 6.8 -0.02
C57L/J m 6.68 0.507   5 0.227 0.0759 6.2, 7.4 -0.09
CBA/J f 6.04 1.27   8 0.451 0.211 4.8, 8.6 -0.04
CBA/J m 7.38 0.708   6 0.289 0.0959 6.1, 8.2 0.7
DBA/2J f 6.48 0.602   5 0.269 0.0928 5.7, 7.1 0.5
DBA/2J m 8.49 2.27   7 0.858 0.267 5.9, 12.4 1.95
FVB/NJ f 7.46 1.1   8 0.388 0.147 5.8, 8.9 1.71
FVB/NJ m 6.77 0.651   3 0.376 0.0962 6.1, 7.4 0.01
KK/HlJ f 6.13 0.598   10 0.189 0.0976 5.4, 7.2 0.08
KK/HlJ m 7.6 1.11   7 0.419 0.146 6.5, 9.8 0.94
LP/J f 4.97 0.532   6 0.217 0.107 4.2, 5.4 -1.35
LP/J m 6.49 0.854   8 0.302 0.132 5.3, 7.6 -0.31
MRL/MpJ f 4.9 0.283   2   0.2 0.0577 4.7, 5.1 -1.43
MRL/MpJ m 5.18 0.295   5 0.132 0.0569 4.9, 5.6 -1.78
NOD.B10Sn-H2b/J f 7.41 1.25   7 0.473 0.169 6.3, 9.3 1.65
NOD.B10Sn-H2b/J m 9.0 1.17   4 0.585 0.13 7.4, 10.2 2.52
NON/ShiLtJ f 6.33 0.792   14 0.212 0.125 5.2, 7.6 0.32
NON/ShiLtJ m 6.54 1.02   7 0.384 0.155 5.0, 8.0 -0.25
NZO/HlLtJ f 6.99 1.48   9 0.492 0.211 5.3, 9.7 1.13
NZW/LacJ f 4.82 0.766   5 0.343 0.159 4.1, 5.7 -1.53
NZW/LacJ m 6.75 0.862   6 0.352 0.128 5.4, 7.9 -0.01
P/J f 7.82 1.58   5 0.708 0.202 5.9, 9.6 2.15
P/J m 7.1 0.753   4 0.376 0.106 6.2, 8.0 0.38
PL/J f 5.97 0.378   6 0.154 0.0633 5.5, 6.3 -0.12
PL/J m 5.78 0.754   4 0.377 0.131 4.9, 6.5 -1.1
PWD/PhJ f 5.51 1.02   7 0.387 0.186 4.1, 7.1 -0.69
PWD/PhJ m 5.5 1.06   5 0.472 0.192 4.7, 7.3 -1.42
RIIIS/J f 5.9 1.68   6 0.688 0.285 4.4, 8.6 -0.21
RIIIS/J m 5.97 0.842   7 0.318 0.141 5.0, 7.5 -0.89
SJL/J f 5.66 0.553   8 0.195 0.0976 4.7, 6.5 -0.5
SJL/J m 6.6 0.696   6 0.284 0.105 5.6, 7.4 -0.18
SM/J f 5.49 0.91   7 0.344 0.166 4.4, 6.5 -0.71
SM/J m 7.38 1.52   5 0.679 0.206 5.6, 9.4 0.7
SWR/J f 6.04 1.27   8 0.45 0.211 4.2, 7.9 -0.04
SWR/J m 6.65 0.712   6 0.291 0.107 6.0, 7.9 -0.13
WSB/EiJ f 5.46 1.11   8 0.391 0.202 3.5, 7.2 -0.75
WSB/EiJ m 5.89 1.25   7 0.473 0.213 4.2, 7.8 -0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.5714 0.3791 5.3175 3.8254
129S1/SvImJ m 5.6571 0.3791 6.4032 4.9111
A/J f 5.175 0.3546 5.8729 4.4771
A/J m 7.3 0.4095 8.1058 6.4942
BALB/cByJ f 5.9 0.3791 6.646 5.154
BALB/cByJ m 6.72 0.4486 7.6027 5.8373
BTBR T+ Itpr3tf/J f 6.4167 0.4095 7.2225 5.6108
BTBR T+ Itpr3tf/J m 6.4 0.4486 7.2827 5.5173
C3H/HeJ f 6.05 0.4095 6.8558 5.2442
C3H/HeJ m 6.1375 0.3546 6.8354 5.4396
C57BL/10J f 6.9714 0.3791 7.7175 6.2254
C57BL/10J m 7.4857 0.3791 8.2318 6.7397
C57BL/6J f 7.1125 0.3546 7.8104 6.4146
C57BL/6J m 8.0429 0.3791 8.7889 7.2968
C57BLKS/J f 6.3429 0.3791 7.0889 5.5968
C57BLKS/J m 6.6286 0.3791 7.3746 5.8825
C57BR/cdJ f 6.2875 0.3546 6.9854 5.5896
C57BR/cdJ m 6.425 0.3546 7.1229 5.7271
C57L/J f 6.05 0.3546 6.7479 5.3521
C57L/J m 6.68 0.4486 7.5627 5.7973
CBA/J f 6.0375 0.3546 6.7354 5.3396
CBA/J m 7.3833 0.4095 8.1892 6.5775
DBA/2J f 6.48 0.4486 7.3627 5.5973
DBA/2J m 8.4857 0.3791 9.2318 7.7397
FVB/NJ f 7.4625 0.3546 8.1604 6.7646
FVB/NJ m 6.7667 0.5791 7.9063 5.6271
KK/HlJ f 6.13 0.3172 6.7542 5.5058
KK/HlJ m 7.6 0.3791 8.346 6.854
LP/J f 4.9667 0.4095 5.7725 4.1608
LP/J m 6.4875 0.3546 7.1854 5.7896
MRL/MpJ f 4.9 0.7092 6.2957 3.5043
MRL/MpJ m 5.18 0.4486 6.0627 4.2973
NOD.B10Sn-H2b/J f 7.4143 0.3791 8.1603 6.6682
NOD.B10Sn-H2b/J m 9.0 0.5015 9.9869 8.0131
NON/ShiLtJ f 6.3286 0.2681 6.8561 5.801
NON/ShiLtJ m 6.5429 0.3791 7.2889 5.7968
NZW/LacJ f 4.82 0.4486 5.7027 3.9373
NZW/LacJ m 6.75 0.4095 7.5558 5.9442
P/J f 7.82 0.4486 8.7027 6.9373
P/J m 7.1 0.5015 8.0869 6.1131
PL/J f 5.9667 0.4095 6.7725 5.1608
PL/J m 5.775 0.5015 6.7619 4.7881
PWD/PhJ f 5.5143 0.3791 6.2603 4.7682
PWD/PhJ m 5.5 0.4486 6.3827 4.6173
RIIIS/J f 5.9 0.4095 6.7058 5.0942
RIIIS/J m 5.9714 0.3791 6.7175 5.2254
SJL/J f 5.6625 0.3546 6.3604 4.9646
SJL/J m 6.6 0.4095 7.4058 5.7942
SM/J f 5.4857 0.3791 6.2318 4.7397
SM/J m 7.38 0.4486 8.2627 6.4973
SWR/J f 6.0375 0.3546 6.7354 5.3396
SWR/J m 6.65 0.4095 7.4558 5.8442
WSB/EiJ f 5.4625 0.3546 6.1604 4.7646
WSB/EiJ m 5.8857 0.3791 6.6318 5.1397


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.1143 0.2681 5.6418 4.5868
A/J both 6.2375 0.2708 6.7705 5.7045
BALB/cByJ both 6.31 0.2937 6.8879 5.7321
BTBR T+ Itpr3tf/J both 6.4083 0.3037 7.0059 5.8107
C3H/HeJ both 6.0938 0.2708 6.6267 5.5608
C57BL/10J both 7.2286 0.2681 7.7561 6.701
C57BL/6J both 7.5777 0.2596 8.0885 7.0669
C57BLKS/J both 6.4857 0.2681 7.0132 5.9582
C57BR/cdJ both 6.3563 0.2508 6.8497 5.8628
C57L/J both 6.365 0.2859 6.9276 5.8024
CBA/J both 6.7104 0.2708 7.2434 6.1774
DBA/2J both 7.4829 0.2937 8.0607 6.905
FVB/NJ both 7.1146 0.3395 7.7827 6.4464
KK/HlJ both 6.865 0.2471 7.3514 6.3786
LP/J both 5.7271 0.2708 6.2601 5.1941
MRL/MpJ both 5.04 0.4196 5.8657 4.2143
NOD.B10Sn-H2b/J both 8.2071 0.3143 8.8257 7.5886
NON/ShiLtJ both 6.4357 0.2322 6.8926 5.9789
NZW/LacJ both 5.785 0.3037 6.3826 5.1874
P/J both 7.46 0.3364 8.122 6.798
PL/J both 5.8708 0.3237 6.5079 5.2338
PWD/PhJ both 5.5071 0.2937 6.085 4.9293
RIIIS/J both 5.9357 0.279 6.4848 5.3866
SJL/J both 6.1313 0.2708 6.6642 5.5983
SM/J both 6.4329 0.2937 7.0107 5.855
SWR/J both 6.3438 0.2708 6.8767 5.8108
WSB/EiJ both 5.6741 0.2596 6.1849 5.1633




  GWAS USING LINEAR MIXED MODELS