Project measure / variable:   Yuan3   Fe_M12

ID, description, units MPD:24427   Fe_M12   iron (serum Fe)   [mmol/L]  at age 12mo  
Data set, strains Yuan3   inbred   31 strains     sex: both     age: 52wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Yuan3 - iron (serum Fe) at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains28 strains
Mean of the strain means250   mmol/L 214   mmol/L
Median of the strain means236   mmol/L 216   mmol/L
SD of the strain means± 55.6 ± 38.7
Coefficient of variation (CV)0.223 0.181
Min–max range of strain means153   –   385   mmol/L 146   –   292   mmol/L
Mean sample size per strain6.9   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 99258.1186 99258.1186 68.8969 < 0.0001
strain 26 732379.0055 28168.4233 19.5522 < 0.0001
sex:strain 26 190273.2833 7318.2032 5.0797 < 0.0001
Residuals 326 469660.0768 1440.6751


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 203.0 54.9   8 19.4 0.27 147.0, 327.0 -0.84
129S1/SvImJ m 209.0 18.0   8 6.35 0.0858 181.0, 231.0 -0.14
A/J f 218.0 32.6   5 14.6 0.15 166.0, 241.0 -0.57
A/J m 245.0 36.7   16 9.18 0.15 188.0, 336.0 0.79
AKR/J f 316.0 33.2   2   23.5 0.105 293.0, 340.0 1.19
AKR/J m 258.0 31.3   3 18.1 0.121 222.0, 279.0 1.12
BALB/cByJ f 205.0 16.7   7 6.32 0.0817 176.0, 228.0 -0.81
BALB/cByJ m 197.0 57.4   8 20.3 0.291 94.0, 287.0 -0.45
BTBR T+ Itpr3tf/J f 253.0 21.6   8 7.63 0.0853 208.0, 271.0 0.06
BTBR T+ Itpr3tf/J m 271.0 28.4   7 10.8 0.105 236.0, 311.0 1.46
BUB/BnJ f 286.0 35.4   5 15.8 0.124 255.0, 344.0 0.65
BUB/BnJ m 246.0 30.1   8 10.6 0.122 213.0, 295.0 0.81
C3H/HeJ f 230.0 32.8   8 11.6 0.143 191.0, 279.0 -0.36
C3H/HeJ m 215.0 10.6   7 4.02 0.0494 202.0, 229.0 0.01
C57BL/10J f 178.0 37.0   8 13.1 0.207 115.0, 219.0 -1.29
C57BL/10J m 171.0 31.5   7 11.9 0.184 114.0, 208.0 -1.12
C57BL/6J f 153.0 30.1   8 10.6 0.197 120.0, 205.0 -1.74
C57BL/6J m 164.0 17.8   7 6.72 0.109 141.0, 193.0 -1.3
C57BLKS/J f 161.0 49.5   8 17.5 0.308 96.0, 246.0 -1.6
C57BLKS/J m 170.0 18.1   8 6.38 0.106 139.0, 190.0 -1.15
C57BR/cdJ f 268.0 12.0   2   8.5 0.0448 260.0, 277.0 0.33
C57BR/cdJ m 165.0 47.4   8 16.8 0.287 111.0, 231.0 -1.28
C57L/J f 300.0 39.4   7 14.9 0.132 243.0, 341.0 0.9
C57L/J m 204.0 28.7   8 10.1 0.14 169.0, 256.0 -0.27
CAST/EiJ f 206.0 20.7   8 7.31 0.1 184.0, 237.0 -0.79
CBA/J f 204.0 36.4   7 13.8 0.178 150.0, 256.0 -0.82
CBA/J m 228.0 58.8   6 24.0 0.259 136.0, 317.0 0.35
DBA/2J f 234.0 51.2   5 22.9 0.219 178.0, 308.0 -0.28
DBA/2J m 179.0 45.8   6 18.7 0.256 119.0, 239.0 -0.92
FVB/NJ f 385.0 48.3   8 17.1 0.125 308.0, 457.0 2.43
FVB/NJ m 236.0 15.2   6 6.19 0.0642 220.0, 258.0 0.55
KK/HlJ f 346.0 48.3   8 17.1 0.14 274.0, 427.0 1.73
KK/HlJ m 260.0 27.0   6 11.0 0.104 214.0, 290.0 1.17
LP/J f 236.0 52.3   7 19.8 0.222 160.0, 305.0 -0.25
LP/J m 219.0 14.3   6 5.82 0.0652 196.0, 236.0 0.12
MRL/MpJ f 286.0 35.6   8 12.6 0.125 237.0, 359.0 0.65
MRL/MpJ m 278.0 65.7   8 23.2 0.236 152.0, 365.0 1.64
NOD.B10Sn-H2b/J f 314.0 72.0   6 29.4 0.229 209.0, 421.0 1.15
NOD.B10Sn-H2b/J m 241.0 19.4   7 7.32 0.0805 215.0, 279.0 0.68
NON/ShiLtJ f 262.0 51.7   8 18.3 0.197 187.0, 333.0 0.22
NON/ShiLtJ m 221.0 22.9   7 8.64 0.103 193.0, 253.0 0.17
NZO/HlLtJ f 211.0 17.8   7 6.74 0.0846 187.0, 243.0 -0.7
NZO/HlLtJ m 166.0 32.4   6 13.2 0.195 107.0, 196.0 -1.25
NZW/LacJ f 209.0 21.0   8 7.44 0.1 175.0, 245.0 -0.73
NZW/LacJ m 235.0 27.4   8 9.7 0.117 192.0, 274.0 0.53
P/J f 253.0 49.1   8 17.4 0.194 196.0, 319.0 0.06
PL/J f 226.0 0.0   1   0.0 0.0 226.0, 226.0 -0.43
PL/J m 218.0 9.24   3 5.33 0.0424 207.0, 223.0 0.09
PWD/PhJ f 199.0 25.7   8 9.07 0.129 158.0, 250.0 -0.91
PWD/PhJ m 146.0 18.8   8 6.63 0.128 122.0, 170.0 -1.77
RIIIS/J f 255.0 27.7   8 9.78 0.108 221.0, 302.0 0.09
RIIIS/J m 201.0 30.8   8 10.9 0.153 155.0, 250.0 -0.35
SJL/J f 216.0 61.0   6 24.9 0.282 162.0, 327.0 -0.61
SJL/J m 179.0 22.2   4 11.1 0.124 160.0, 209.0 -0.92
SM/J f 304.0 29.3   7 11.1 0.0964 275.0, 344.0 0.97
SM/J m 192.0 50.7   8 17.9 0.264 130.0, 257.0 -0.58
SWR/J f 322.0 54.6   7 20.6 0.17 277.0, 428.0 1.3
SWR/J m 292.0 32.2   7 12.2 0.11 257.0, 340.0 2.0
WSB/EiJ f 305.0 26.7   7 10.1 0.0874 255.0, 343.0 0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 203.25 13.4196 229.6498 176.8502
129S1/SvImJ m 209.25 13.4196 235.6498 182.8502
A/J f 218.2 16.9745 251.5935 184.8065
A/J m 244.5625 9.4891 263.23 225.895
AKR/J f 316.5 26.8391 369.2997 263.7003
AKR/J m 258.0 21.914 301.1108 214.8892
BALB/cByJ f 204.7143 14.3461 232.9369 176.4917
BALB/cByJ m 197.375 13.4196 223.7748 170.9752
BTBR T+ Itpr3tf/J f 253.0 13.4196 279.3998 226.6002
BTBR T+ Itpr3tf/J m 271.0 14.3461 299.2226 242.7774
BUB/BnJ f 286.2 16.9745 319.5935 252.8065
BUB/BnJ m 246.125 13.4196 272.5248 219.7252
C3H/HeJ f 229.625 13.4196 256.0248 203.2252
C3H/HeJ m 215.1429 14.3461 243.3655 186.9202
C57BL/10J f 178.25 13.4196 204.6498 151.8502
C57BL/10J m 170.8571 14.3461 199.0798 142.6345
C57BL/6J f 153.125 13.4196 179.5248 126.7252
C57BL/6J m 163.5714 14.3461 191.7941 135.3488
C57BLKS/J f 161.0 13.4196 187.3998 134.6002
C57BLKS/J m 170.5 13.4196 196.8998 144.1002
C57BR/cdJ f 268.5 26.8391 321.2997 215.7003
C57BR/cdJ m 165.125 13.4196 191.5248 138.7252
C57L/J f 299.5714 14.3461 327.7941 271.3488
C57L/J m 204.5 13.4196 230.8998 178.1002
CBA/J f 204.2857 14.3461 232.5083 176.0631
CBA/J m 227.5 15.4956 257.9839 197.0161
DBA/2J f 233.6 16.9745 266.9935 200.2065
DBA/2J m 178.6667 15.4956 209.1506 148.1827
FVB/NJ f 385.125 13.4196 411.5248 358.7252
FVB/NJ m 236.1667 15.4956 266.6506 205.6827
KK/HlJ f 346.0 13.4196 372.3998 319.6002
KK/HlJ m 259.6667 15.4956 290.1506 229.1827
LP/J f 235.8571 14.3461 264.0798 207.6345
LP/J m 218.6667 15.4956 249.1506 188.1827
MRL/MpJ f 285.625 13.4196 312.0248 259.2252
MRL/MpJ m 278.375 13.4196 304.7748 251.9752
NOD.B10Sn-H2b/J f 314.3333 15.4956 344.8173 283.8494
NOD.B10Sn-H2b/J m 240.7143 14.3461 268.9369 212.4917
NON/ShiLtJ f 262.5 13.4196 288.8998 236.1002
NON/ShiLtJ m 221.0 14.3461 249.2226 192.7774
NZO/HlLtJ f 211.0 14.3461 239.2226 182.7774
NZO/HlLtJ m 166.1667 15.4956 196.6506 135.6827
NZW/LacJ f 209.375 13.4196 235.7748 182.9752
NZW/LacJ m 235.0 13.4196 261.3998 208.6002
PWD/PhJ f 199.375 13.4196 225.7748 172.9752
PWD/PhJ m 146.5 13.4196 172.8998 120.1002
RIIIS/J f 255.125 13.4196 281.5248 228.7252
RIIIS/J m 201.125 13.4196 227.5248 174.7252
SJL/J f 216.5 15.4956 246.9839 186.0161
SJL/J m 179.25 18.9781 216.585 141.915
SM/J f 304.1429 14.3461 332.3655 275.9202
SM/J m 192.125 13.4196 218.5248 165.7252
SWR/J f 322.1429 14.3461 350.3655 293.9202
SWR/J m 292.4286 14.3461 320.6512 264.2059


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 206.25 9.4891 224.9175 187.5825
A/J both 231.3813 9.7234 250.5098 212.2527
AKR/J both 287.25 17.3246 321.3321 253.1679
BALB/cByJ both 201.0446 9.8221 220.3674 181.7219
BTBR T+ Itpr3tf/J both 262.0 9.8221 281.3227 242.6773
BUB/BnJ both 266.1625 10.8192 287.4467 244.8783
C3H/HeJ both 222.3839 9.8221 241.7066 203.0612
C57BL/10J both 174.5536 9.8221 193.8763 155.2309
C57BL/6J both 158.3482 9.8221 177.6709 139.0255
C57BLKS/J both 165.75 9.4891 184.4175 147.0825
C57BR/cdJ both 216.8125 15.0035 246.3284 187.2966
C57L/J both 252.0357 9.8221 271.3584 232.713
CBA/J both 215.8929 10.5584 236.6641 195.1216
DBA/2J both 206.1333 11.4918 228.7408 183.5259
FVB/NJ both 310.6458 10.2494 330.8091 290.4826
KK/HlJ both 302.8333 10.2494 322.9966 282.6701
LP/J both 227.2619 10.5584 248.0332 206.4906
MRL/MpJ both 282.0 9.4891 300.6675 263.3325
NOD.B10Sn-H2b/J both 277.5238 10.5584 298.2951 256.7525
NON/ShiLtJ both 241.75 9.8221 261.0727 222.4273
NZO/HlLtJ both 188.5833 10.5584 209.3546 167.812
NZW/LacJ both 222.1875 9.4891 240.855 203.52
PWD/PhJ both 172.9375 9.4891 191.605 154.27
RIIIS/J both 228.125 9.4891 246.7925 209.4575
SJL/J both 197.875 12.2503 221.9747 173.7753
SM/J both 248.1339 9.8221 267.4566 228.8112
SWR/J both 307.2857 10.1442 327.2421 287.3293




  GWAS USING LINEAR MIXED MODELS