Project measure / variable:   Petkova1   NK_M18

ID, description, units MPD:24278   NK_M18   natural killer (NK) cells, as percentage of total lymphocytes   [%]  at age 18mo  
Data set, strains Petkova1   inbred   30 strains     sex: both     age: 78wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Petkova1 - natural killer (NK) cells, as percentage of total lymphocytes at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains25 strains
Mean of the strain means2.91   % 2.64   %
Median of the strain means2.92   % 2.25   %
SD of the strain means± 1.60 ± 1.46
Coefficient of variation (CV)0.549 0.554
Min–max range of strain means0.164   –   6.81   % 0.234   –   5.30   %
Mean sample size per strain7.3   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.0774 1.0774 0.6792 0.4106
strain 22 720.9471 32.7703 20.6575 < 0.0001
sex:strain 22 47.2072 2.1458 1.3526 0.1373
Residuals 278 441.0095 1.5864


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.18 1.2   7 0.453 0.551 1.32, 4.55 -0.46
129S1/SvImJ m 1.81 0.386   8 0.136 0.214 1.38, 2.39 -0.57
A/J f 2.98 0.879   8 0.311 0.295 1.84, 4.06 0.05
BALB/cByJ f 4.08 1.0   8 0.355 0.246 1.83, 4.97 0.73
BALB/cByJ m 3.76 0.812   6 0.331 0.216 2.43, 4.48 0.77
BTBR T+ Itpr3tf/J f 4.23 2.15   8 0.761 0.509 1.68, 7.62 0.83
BTBR T+ Itpr3tf/J m 2.64 1.59   5 0.711 0.602 1.39, 5.4 0.0
BUB/BnJ f 0.644 0.191   8 0.0674 0.296 0.37, 0.89 -1.42
BUB/BnJ m 1.66 0.242   6 0.0986 0.145 1.38, 2.02 -0.67
C3H/HeJ f 3.83 1.01   8 0.358 0.265 2.51, 5.74 0.58
C3H/HeJ m 4.02 1.27   8 0.45 0.317 1.75, 5.55 0.95
C57BL/10J f 3.61 0.743   7 0.281 0.206 2.44, 4.73 0.44
C57BL/10J m 4.7 0.0   1   0.0 0.0 4.7, 4.7 1.42
C57BL/6J f 6.02 3.17   8 1.12 0.526 3.12, 11.9 1.95
C57BL/6J m 5.3 5.21   7 1.97 0.982 2.69, 17.0 1.83
C57BLKS/J f 3.59 1.76   7 0.666 0.491 2.4, 7.51 0.43
C57BR/cdJ f 3.82 1.03   8 0.365 0.27 2.46, 5.94 0.57
C57BR/cdJ m 3.76 0.744   8 0.263 0.198 2.97, 5.04 0.77
C57L/J f 6.81 2.39   8 0.845 0.351 4.83, 11.3 2.45
C57L/J m 5.12 0.708   6 0.289 0.138 4.26, 6.14 1.7
CBA/J f 4.01 1.3   8 0.46 0.324 2.58, 6.26 0.69
CBA/J m 3.95 0.529   6 0.216 0.134 3.14, 4.58 0.9
DBA/2J f 2.12 0.705   7 0.267 0.332 1.09, 3.04 -0.49
DBA/2J m 2.48 0.451   8 0.159 0.181 1.95, 2.96 -0.11
FVB/NJ f 3.58 0.659   8 0.233 0.184 2.45, 4.53 0.42
KK/HlJ f 3.07 1.4   7 0.528 0.455 0.734, 5.48 0.1
KK/HlJ m 5.25 0.794   7 0.3 0.151 4.17, 6.27 1.79
LP/J f 2.92 0.651   7 0.246 0.223 1.49, 3.33 0.01
LP/J m 2.43 0.634   8 0.224 0.261 1.72, 3.6 -0.14
MOLF/EiJ f 0.164 0.035   9 0.0117 0.213 0.11, 0.22 -1.72
MOLF/EiJ m 0.234 0.16   7 0.0605 0.684 0.11, 0.58 -1.65
MRL/MpJ f 1.79 0.531   6 0.217 0.296 0.81, 2.3 -0.7
MRL/MpJ m 1.66 0.913   8 0.323 0.55 0.89, 3.17 -0.67
NOD.B10Sn-H2b/J f 2.18 0.737   7 0.279 0.339 1.41, 3.23 -0.46
NOD.B10Sn-H2b/J m 1.66 0.418   6 0.171 0.252 1.14, 2.14 -0.67
NON/ShiLtJ f 2.32 0.194   7 0.0734 0.0837 2.16, 2.73 -0.37
NON/ShiLtJ m 3.05 0.355   7 0.134 0.117 2.55, 3.67 0.28
NZO/HlLtJ f 3.4 0.784   3 0.453 0.231 2.81, 4.29 0.31
NZW/LacJ f 1.94 0.482   8 0.17 0.248 1.41, 2.97 -0.61
NZW/LacJ m 1.78 0.484   7 0.183 0.272 1.29, 2.38 -0.59
P/J f 2.25 0.707   5 0.316 0.314 1.56, 3.4 -0.41
P/J m 1.37 0.504   4 0.252 0.367 1.07, 2.12 -0.87
PL/J f 0.79 0.123   4 0.0615 0.156 0.63, 0.93 -1.33
PL/J m 0.786 0.242   5 0.108 0.308 0.5, 1.08 -1.27
PWD/PhJ f 1.75 0.234   8 0.0828 0.134 1.25, 1.95 -0.73
PWD/PhJ m 1.91 0.251   8 0.0888 0.132 1.63, 2.3 -0.5
RIIIS/J m 1.74 0.319   8 0.113 0.183 1.4, 2.21 -0.61
SJL/J f 2.26 0.724   8 0.256 0.321 1.31, 3.38 -0.41
SJL/J m 2.25 1.12   7 0.423 0.498 1.01, 3.84 -0.26
SM/J f 5.82 2.66   7 1.01 0.457 3.41, 10.9 1.82
SWR/J f 1.02 0.413   7 0.156 0.405 0.56, 1.84 -1.18
SWR/J m 1.48 0.618   6 0.252 0.417 0.74, 2.15 -0.79
WSB/EiJ f 1.14 0.202   8 0.0713 0.176 0.8, 1.36 -1.11
WSB/EiJ m 1.08 0.251   7 0.095 0.233 0.8, 1.45 -1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.1757 0.476 3.1128 1.2386
129S1/SvImJ m 1.8062 0.4453 2.6828 0.9297
BALB/cByJ f 4.0787 0.4453 4.9553 3.2022
BALB/cByJ m 3.7583 0.5142 4.7705 2.7461
BTBR T+ Itpr3tf/J f 4.2325 0.4453 5.1091 3.3559
BTBR T+ Itpr3tf/J m 2.642 0.5633 3.7508 1.5332
BUB/BnJ f 0.6438 0.4453 1.5203 0.0
BUB/BnJ m 1.6617 0.5142 2.6739 0.6495
C3H/HeJ f 3.8262 0.4453 4.7028 2.9497
C3H/HeJ m 4.02 0.4453 4.8966 3.1434
C57BL/6J f 6.0212 0.4453 6.8978 5.1447
C57BL/6J m 5.3 0.476 6.2371 4.3629
C57BR/cdJ f 3.8237 0.4453 4.7003 2.9472
C57BR/cdJ m 3.7625 0.4453 4.6391 2.8859
C57L/J f 6.8137 0.4453 7.6903 5.9372
C57L/J m 5.1233 0.5142 6.1355 4.1111
CBA/J f 4.0125 0.4453 4.8891 3.1359
CBA/J m 3.9483 0.5142 4.9605 2.9361
DBA/2J f 2.1229 0.476 3.06 1.1857
DBA/2J m 2.485 0.4453 3.3616 1.6084
KK/HlJ f 3.0691 0.476 4.0063 2.132
KK/HlJ m 5.2471 0.476 6.1843 4.31
LP/J f 2.9186 0.476 3.8557 1.9815
LP/J m 2.4263 0.4453 3.3028 1.5497
MOLF/EiJ f 0.1644 0.4198 0.9909 0.0
MOLF/EiJ m 0.2343 0.476 1.1714 0.0
MRL/MpJ f 1.7917 0.5142 2.8039 0.7795
MRL/MpJ m 1.66 0.4453 2.5366 0.7834
NOD.B10Sn-H2b/J f 2.1771 0.476 3.1143 1.24
NOD.B10Sn-H2b/J m 1.6567 0.5142 2.6689 0.6445
NON/ShiLtJ f 2.3214 0.476 3.2585 1.3843
NON/ShiLtJ m 3.0471 0.476 3.9843 2.11
NZW/LacJ f 1.9438 0.4453 2.8203 1.0672
NZW/LacJ m 1.7814 0.476 2.7185 0.8443
P/J f 2.248 0.5633 3.3568 1.1392
P/J m 1.3725 0.6298 2.6122 0.1328
PL/J f 0.79 0.6298 2.0297 0.0
PL/J m 0.786 0.5633 1.8948 0.0
PWD/PhJ f 1.7487 0.4453 2.6253 0.8722
PWD/PhJ m 1.905 0.4453 2.7816 1.0284
SJL/J f 2.2575 0.4453 3.1341 1.3809
SJL/J m 2.2486 0.476 3.1857 1.3115
SWR/J f 1.0186 0.476 1.9557 0.0815
SWR/J m 1.48 0.5142 2.4922 0.4678
WSB/EiJ f 1.1437 0.4453 2.0203 0.2672
WSB/EiJ m 1.08 0.476 2.0171 0.1429


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.991 0.3259 2.6326 1.3494
BALB/cByJ both 3.9185 0.3401 4.5881 3.249
BTBR T+ Itpr3tf/J both 3.4373 0.359 4.144 2.7305
BUB/BnJ both 1.1527 0.3401 1.8222 0.4832
C3H/HeJ both 3.9231 0.3149 4.543 3.3033
C57BL/6J both 5.6606 0.3259 6.3022 5.019
C57BR/cdJ both 3.7931 0.3149 4.413 3.1733
C57L/J both 5.9685 0.3401 6.6381 5.299
CBA/J both 3.9804 0.3401 4.6499 3.3109
DBA/2J both 2.3039 0.3259 2.9455 1.6623
KK/HlJ both 4.1581 0.3366 4.8208 3.4955
LP/J both 2.6724 0.3259 3.314 2.0308
MOLF/EiJ both 0.1994 0.3174 0.8241 0.0
MRL/MpJ both 1.7258 0.3401 2.3953 1.0563
NOD.B10Sn-H2b/J both 1.9169 0.3504 2.6066 1.2272
NON/ShiLtJ both 2.6843 0.3366 3.3469 2.0216
NZW/LacJ both 1.8626 0.3259 2.5042 1.221
P/J both 1.8102 0.4225 2.6419 0.9786
PL/J both 0.788 0.4225 1.6196 0.0
PWD/PhJ both 1.8269 0.3149 2.4467 1.207
SJL/J both 2.253 0.3259 2.8946 1.6114
SWR/J both 1.2493 0.3504 1.939 0.5596
WSB/EiJ both 1.1119 0.3259 1.7535 0.4703




  GWAS USING LINEAR MIXED MODELS