Project measure / variable:   Petkova1   LYM_M18

ID, description, units MPD:24208   LYM_M18   lymphocyte differential (LYM; percentage of total WBC)   [%]  at age 18mo  
Data set, strains Petkova1   inbred   30 strains     sex: both     age: 78wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Petkova1 - lymphocyte differential (LYM; percentage of total WBC) at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains25 strains
Mean of the strain means49.6   % 46.8   %
Median of the strain means49.7   % 47.0   %
SD of the strain means± 12.1 ± 11.3
Coefficient of variation (CV)0.244 0.242
Min–max range of strain means21.7   –   66.9   % 24.4   –   62.2   %
Mean sample size per strain7.3   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 672.4938 672.4938 4.886 0.0279
strain 22 38269.9418 1739.5428 12.6388 < 0.0001
sex:strain 22 3430.1904 155.9177 1.1328 0.3109
Residuals 278 38262.6877 137.6356


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 37.6 6.39   7 2.42 0.17 23.9, 42.4 -0.99
129S1/SvImJ m 31.4 4.12   8 1.46 0.131 22.6, 37.1 -1.36
A/J f 44.6 16.3   8 5.75 0.365 12.0, 58.6 -0.41
BALB/cByJ f 46.0 14.3   8 5.04 0.31 23.6, 61.9 -0.3
BALB/cByJ m 42.3 13.6   6 5.54 0.321 18.2, 55.8 -0.4
BTBR T+ Itpr3tf/J f 53.5 12.5   8 4.41 0.233 27.4, 68.2 0.32
BTBR T+ Itpr3tf/J m 60.3 5.67   5 2.54 0.0941 52.8, 68.3 1.19
BUB/BnJ f 66.9 12.2   8 4.32 0.183 51.8, 84.8 1.43
BUB/BnJ m 60.3 8.25   6 3.37 0.137 47.7, 70.1 1.19
C3H/HeJ f 46.8 8.99   8 3.18 0.192 36.9, 65.1 -0.23
C3H/HeJ m 44.1 3.72   8 1.32 0.0845 36.8, 47.9 -0.24
C57BL/10J f 61.0 6.17   7 2.33 0.101 54.7, 71.8 0.94
C57BL/10J m 42.9 0.0   1   0.0 0.0 42.9, 42.9 -0.35
C57BL/6J f 63.2 14.2   8 5.03 0.225 30.5, 78.8 1.12
C57BL/6J m 61.4 18.2   7 6.88 0.297 24.6, 78.5 1.28
C57BLKS/J f 63.4 6.67   7 2.52 0.105 48.9, 69.1 1.14
C57BR/cdJ f 61.9 10.1   8 3.56 0.162 52.7, 85.9 1.02
C57BR/cdJ m 62.2 8.78   8 3.1 0.141 45.1, 74.5 1.35
C57L/J f 55.9 10.3   8 3.64 0.184 38.6, 70.4 0.52
C57L/J m 55.0 10.9   6 4.45 0.198 34.8, 63.8 0.72
CBA/J f 49.3 7.61   8 2.69 0.154 34.2, 57.8 -0.03
CBA/J m 56.3 5.92   6 2.42 0.105 46.3, 62.6 0.83
DBA/2J f 52.2 8.93   7 3.38 0.171 39.9, 62.3 0.21
DBA/2J m 41.8 12.8   8 4.54 0.307 27.5, 61.3 -0.44
FVB/NJ f 63.0 3.78   8 1.34 0.06 58.5, 68.8 1.11
KK/HlJ f 23.3 12.9   7 4.86 0.552 9.28, 47.9 -2.18
KK/HlJ m 31.5 4.44   7 1.68 0.141 25.0, 35.5 -1.35
LP/J f 57.2 5.27   7 1.99 0.0922 48.0, 61.6 0.63
LP/J m 52.4 7.2   8 2.54 0.137 38.1, 59.4 0.49
MOLF/EiJ f 57.1 6.81   9 2.27 0.119 44.9, 64.6 0.62
MOLF/EiJ m 55.0 10.2   7 3.84 0.185 37.4, 66.8 0.72
MRL/MpJ f 21.7 10.9   6 4.45 0.503 9.66, 38.4 -2.31
MRL/MpJ m 29.5 13.2   8 4.67 0.448 15.2, 55.0 -1.53
NOD.B10Sn-H2b/J f 40.8 7.95   7 3.0 0.195 26.2, 51.9 -0.73
NOD.B10Sn-H2b/J m 43.2 8.66   6 3.53 0.2 33.4, 55.9 -0.32
NON/ShiLtJ f 37.7 4.91   7 1.86 0.131 31.0, 45.9 -0.98
NON/ShiLtJ m 33.6 8.33   7 3.15 0.248 20.3, 43.0 -1.17
NZO/HlLtJ f 43.4 12.4   3 7.13 0.285 29.6, 53.5 -0.51
NZW/LacJ f 55.3 19.0   8 6.71 0.343 17.7, 69.5 0.47
NZW/LacJ m 52.4 7.44   7 2.81 0.142 42.2, 62.7 0.49
P/J f 40.0 16.6   5 7.43 0.415 16.1, 55.6 -0.79
P/J m 47.5 17.4   4 8.71 0.366 22.6, 63.1 0.06
PL/J f 28.7 5.49   4 2.75 0.191 23.2, 36.3 -1.73
PL/J m 24.4 4.95   5 2.22 0.203 16.5, 28.9 -1.98
PWD/PhJ f 49.7 17.2   8 6.09 0.346 7.6, 58.7 0.01
PWD/PhJ m 56.8 7.65   8 2.71 0.135 42.3, 66.7 0.88
RIIIS/J m 61.8 7.29   8 2.58 0.118 45.2, 70.6 1.32
SJL/J f 49.1 16.5   8 5.83 0.336 18.8, 74.0 -0.04
SJL/J m 36.6 23.0   7 8.69 0.628 11.4, 63.6 -0.9
SM/J f 60.6 9.04   7 3.42 0.149 47.0, 75.3 0.91
SWR/J f 46.0 23.3   7 8.8 0.507 10.8, 67.1 -0.3
SWR/J m 41.2 12.0   6 4.9 0.291 27.4, 62.3 -0.5
WSB/EiJ f 62.7 12.3   8 4.35 0.196 40.8, 74.8 1.08
WSB/EiJ m 47.0 10.5   7 3.98 0.224 28.5, 58.7 0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 37.5571 4.4342 46.286 28.8282
129S1/SvImJ m 31.4375 4.1478 39.6026 23.2724
BALB/cByJ f 45.975 4.1478 54.1401 37.8099
BALB/cByJ m 42.2667 4.7895 51.695 32.8384
BTBR T+ Itpr3tf/J f 53.55 4.1478 61.7151 45.3849
BTBR T+ Itpr3tf/J m 60.3 5.2466 70.6282 49.9718
BUB/BnJ f 66.9375 4.1478 75.1026 58.7724
BUB/BnJ m 60.3 4.7895 69.7283 50.8717
C3H/HeJ f 46.7625 4.1478 54.9276 38.5974
C3H/HeJ m 44.075 4.1478 52.2401 35.9099
C57BL/6J f 63.2125 4.1478 71.3776 55.0474
C57BL/6J m 61.3571 4.4342 70.086 52.6282
C57BR/cdJ f 61.9375 4.1478 70.1026 53.7724
C57BR/cdJ m 62.225 4.1478 70.3901 54.0599
C57L/J f 55.9125 4.1478 64.0776 47.7474
C57L/J m 55.0 4.7895 64.4283 45.5717
CBA/J f 49.325 4.1478 57.4901 41.1599
CBA/J m 56.2833 4.7895 65.7116 46.855
DBA/2J f 52.2143 4.4342 60.9432 43.4854
DBA/2J m 41.775 4.1478 49.9401 33.6099
KK/HlJ f 23.2971 4.4342 32.026 14.5682
KK/HlJ m 31.4571 4.4342 40.186 22.7282
LP/J f 57.2143 4.4342 65.9432 48.4854
LP/J m 52.3875 4.1478 60.5526 44.2224
MOLF/EiJ f 57.1333 3.9106 64.8315 49.4352
MOLF/EiJ m 55.0286 4.4342 63.7575 46.2997
MRL/MpJ f 21.71 4.7895 31.1383 12.2817
MRL/MpJ m 29.5 4.1478 37.6651 21.3349
NOD.B10Sn-H2b/J f 40.8429 4.4342 49.5718 32.114
NOD.B10Sn-H2b/J m 43.2167 4.7895 52.645 33.7884
NON/ShiLtJ f 37.6571 4.4342 46.386 28.9282
NON/ShiLtJ m 33.6286 4.4342 42.3575 24.8997
NZW/LacJ f 55.3375 4.1478 63.5026 47.1724
NZW/LacJ m 52.3714 4.4342 61.1003 43.6425
P/J f 40.02 5.2466 50.3482 29.6918
P/J m 47.525 5.8659 59.0722 35.9778
PL/J f 28.675 5.8659 40.2222 17.1278
PL/J m 24.44 5.2466 34.7682 14.1118
PWD/PhJ f 49.725 4.1478 57.8901 41.5599
PWD/PhJ m 56.825 4.1478 64.9901 48.6599
SJL/J f 49.15 4.1478 57.3151 40.9849
SJL/J m 36.6 4.4342 45.3289 27.8711
SWR/J f 45.9714 4.4342 54.7003 37.2425
SWR/J m 41.2333 4.7895 50.6616 31.805
WSB/EiJ f 62.6625 4.1478 70.8276 54.4974
WSB/EiJ m 46.9714 4.4342 55.7003 38.2425


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 34.4973 3.0359 40.4736 28.5211
BALB/cByJ both 44.1208 3.168 50.3571 37.8846
BTBR T+ Itpr3tf/J both 56.925 3.3441 63.5079 50.3421
BUB/BnJ both 63.6188 3.168 69.855 57.3825
C3H/HeJ both 45.4188 2.933 51.1924 39.6451
C57BL/6J both 62.2848 3.0359 68.2611 56.3086
C57BR/cdJ both 62.0813 2.933 67.8549 56.3076
C57L/J both 55.4563 3.168 61.6925 49.22
CBA/J both 52.8042 3.168 59.0404 46.5679
DBA/2J both 46.9946 3.0359 52.9709 41.0184
KK/HlJ both 27.3771 3.1355 33.5494 21.2049
LP/J both 54.8009 3.0359 60.7772 48.8246
MOLF/EiJ both 56.081 2.9561 61.9002 50.2617
MRL/MpJ both 25.605 3.168 31.8412 19.3688
NOD.B10Sn-H2b/J both 42.0298 3.2635 48.4541 35.6055
NON/ShiLtJ both 35.6429 3.1355 41.8151 29.4706
NZW/LacJ both 53.8545 3.0359 59.8307 47.8782
P/J both 43.7725 3.935 51.5186 36.0264
PL/J both 26.5575 3.935 34.3036 18.8114
PWD/PhJ both 53.275 2.933 59.0486 47.5014
SJL/J both 42.875 3.0359 48.8513 36.8987
SWR/J both 43.6024 3.2635 50.0267 37.1781
WSB/EiJ both 54.817 3.0359 60.7932 48.8407




  GWAS USING LINEAR MIXED MODELS