Project measure / variable:   Jaxpheno6   pct_Mono8

ID, description, units MPD:23122   pct_Mono8   splenic monocytes (percentage of total viable cells)   [%]  at age age 8wks  
Data set, strains Jaxpheno6   inbred   11 strains     sex: both     age: 8wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic monocytes (percentage of total viable cells) at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means5.12   % 4.61   %
Median of the strain means4.17   % 3.79   %
SD of the strain means± 3.25 ± 2.91
Coefficient of variation (CV)0.634 0.630
Min–max range of strain means2.88   –   14.3   % 2.52   –   12.8   %
Mean sample size per strain8.9   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.6464 0.6464 1.2568 0.2636
strain 10 1442.7344 144.2734 280.496 < 0.0001
sex:strain 10 16.2063 1.6206 3.1508 0.0009
Residuals 207 106.4707 0.5144


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 6.08 0.929   4 0.465 0.153 5.14, 6.93 0.3
B6.129P2-Apoetm1Unc/J m 5.26 0.929   5 0.415 0.177 4.22, 6.22 0.22
B6D2F1/J f 4.18 0.48   10 0.152 0.115 3.53, 5.04 -0.29
B6D2F1/J m 3.5 0.33   5 0.148 0.0944 3.2, 4.02 -0.38
BALB/cByJ f 4.32 0.492   10 0.156 0.114 3.45, 4.91 -0.25
BALB/cByJ m 3.96 0.465   10 0.147 0.117 3.28, 4.63 -0.22
BALB/cJ f 3.43 0.685   10 0.216 0.2 2.41, 4.42 -0.52
BALB/cJ m 3.29 0.359   10 0.114 0.109 2.85, 3.94 -0.46
C3H/HeJ f 6.37 2.63   5 1.17 0.412 4.42, 11.0 0.39
C3H/HeJ m 5.83 0.638   5 0.285 0.109 5.01, 6.78 0.42
C57BL/6J f 3.71 0.408   30 0.0745 0.11 3.12, 4.59 -0.43
C57BL/6J m 4.24 0.707   15 0.182 0.167 3.49, 5.67 -0.13
CBA/J f 2.88 0.475   10 0.15 0.165 2.21, 3.93 -0.69
CBA/J m 2.6 0.319   20 0.0713 0.123 1.85, 3.11 -0.69
DBA/2J f 3.96 0.648   10 0.205 0.163 3.1, 4.87 -0.36
DBA/2J m 2.94 0.367   15 0.0949 0.125 2.39, 3.7 -0.58
FVB/NJ f 2.9 0.218   5 0.0973 0.075 2.65, 3.22 -0.68
FVB/NJ m 2.52 0.431   10 0.136 0.171 1.97, 3.15 -0.72
NOD.CB17-Prkdcscid/J f 14.3 1.56   5 0.697 0.109 12.7, 16.5 2.83
NOD.CB17-Prkdcscid/J m 12.8 1.58   10 0.498 0.123 9.66, 15.1 2.82
NOD/ShiLtJ f 4.17 0.384   15 0.0992 0.0921 3.52, 4.88 -0.29
NOD/ShiLtJ m 3.79 0.438   10 0.139 0.116 3.03, 4.4 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 6.0775 0.3586 6.7845 5.3705
B6.129P2-Apoetm1Unc/J m 5.256 0.3207 5.8883 4.6237
B6D2F1/J f 4.178 0.2268 4.6251 3.7309
B6D2F1/J m 3.496 0.3207 4.1283 2.8637
BALB/cByJ f 4.317 0.2268 4.7641 3.8699
BALB/cByJ m 3.964 0.2268 4.4111 3.5169
BALB/cJ f 3.429 0.2268 3.8761 2.9819
BALB/cJ m 3.289 0.2268 3.7361 2.8419
C3H/HeJ f 6.374 0.3207 7.0063 5.7417
C3H/HeJ m 5.832 0.3207 6.4643 5.1997
C57BL/6J f 3.713 0.1309 3.9711 3.4549
C57BL/6J m 4.2413 0.1852 4.6064 3.8763
CBA/J f 2.877 0.2268 3.3241 2.4299
CBA/J m 2.5955 0.1604 2.9117 2.2793
DBA/2J f 3.965 0.2268 4.4121 3.5179
DBA/2J m 2.936 0.1852 3.3011 2.5709
FVB/NJ f 2.9 0.3207 3.5323 2.2677
FVB/NJ m 2.515 0.2268 2.9621 2.0679
NOD.CB17-Prkdcscid/J f 14.32 0.3207 14.9523 13.6877
NOD.CB17-Prkdcscid/J m 12.806 0.2268 13.2531 12.3589
NOD/ShiLtJ f 4.1713 0.1852 4.5364 3.8063
NOD/ShiLtJ m 3.787 0.2268 4.2341 3.3399


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 5.6668 0.2406 6.141 5.1925
B6D2F1/J both 3.837 0.1964 4.2242 3.4498
BALB/cByJ both 4.1405 0.1604 4.4567 3.8243
BALB/cJ both 3.359 0.1604 3.6752 3.0428
C3H/HeJ both 6.103 0.2268 6.5501 5.6559
C57BL/6J both 3.9772 0.1134 4.2007 3.7536
CBA/J both 2.7363 0.1389 3.0101 2.4624
DBA/2J both 3.4505 0.1464 3.7391 3.1619
FVB/NJ both 2.7075 0.1964 3.0947 2.3203
NOD.CB17-Prkdcscid/J both 13.563 0.1964 13.9502 13.1758
NOD/ShiLtJ both 3.9792 0.1464 4.2678 3.6906




  GWAS USING LINEAR MIXED MODELS