Project measure / variable:   Jaxpheno6   pct_Granu16

ID, description, units MPD:23121   pct_Granu16   splenic granulocytes (percentage of total viable cells)   [%]  at age age 16wks  
Data set, strains Jaxpheno6   inbred   8 strains     sex: both     age: 16wks
Procedure immune cell quantification
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Jaxpheno6 - splenic granulocytes (percentage of total viable cells) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains6 strains
Mean of the strain means1.60   % 1.63   %
Median of the strain means1.04   % 1.47   %
SD of the strain means± 1.40 ± 1.08
Coefficient of variation (CV)0.869 0.662
Min–max range of strain means0.530   –   4.78   % 0.657   –   3.61   %
Mean sample size per strain8.0   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.7535 1.7535 2.0815 0.1527
strain 5 96.2273 19.2455 22.8452 < 0.0001
sex:strain 5 6.1236 1.2247 1.4538 0.2134
Residuals 86 72.4487 0.8424


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.53 0.156   5 0.0698 0.294 0.4, 0.77 -0.77
BALB/cByJ f 0.988 0.458   10 0.145 0.464 0.43, 1.91 -0.44
BALB/cByJ m 0.718 0.284   9 0.0947 0.396 0.34, 1.15 -0.85
C3H/HeJ f 2.23 0.176   10 0.0557 0.0789 2.05, 2.55 0.45
C3H/HeJ m 1.89 0.721   5 0.322 0.382 1.34, 3.13 0.24
C57BL/6J f 0.776 0.31   5 0.138 0.399 0.54, 1.24 -0.59
CBA/J f 1.1 1.29   9 0.43 1.17 0.25, 4.49 -0.36
CBA/J m 0.657 0.189   10 0.0599 0.288 0.36, 1.0 -0.9
FVB/NJ f 0.786 0.27   10 0.0853 0.343 0.41, 1.19 -0.59
FVB/NJ m 1.6 0.752   5 0.336 0.47 0.79, 2.38 -0.03
NOD.CB17-Prkdcscid/J f 4.78 2.96   5 1.32 0.619 2.28
NOD.CB17-Prkdcscid/J m 3.61 1.28   5 0.572 0.355 2.83, 5.83 1.83
NOD/ShiLtJ f 1.65 0.919   10 0.291 0.556 0.83, 3.94 0.03
NOD/ShiLtJ m 1.33 0.457   10 0.145 0.343 0.71, 2.0 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 0.988 0.2902 1.565 0.411
BALB/cByJ m 0.7178 0.3059 1.326 0.1096
C3H/HeJ f 2.234 0.2902 2.811 1.657
C3H/HeJ m 1.886 0.4105 2.702 1.07
CBA/J f 1.0989 0.3059 1.7071 0.4907
CBA/J m 0.657 0.2902 1.234 0.08
FVB/NJ f 0.786 0.2902 1.363 0.209
FVB/NJ m 1.6 0.4105 2.416 0.784
NOD.CB17-Prkdcscid/J f 4.778 0.4105 5.594 3.962
NOD.CB17-Prkdcscid/J m 3.606 0.4105 4.422 2.79
NOD/ShiLtJ f 1.652 0.2902 2.229 1.075
NOD/ShiLtJ m 1.332 0.2902 1.909 0.755


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 0.8529 0.2109 1.2721 0.4337
C3H/HeJ both 2.06 0.2514 2.5597 1.5603
CBA/J both 0.8779 0.2109 1.2971 0.4588
FVB/NJ both 1.193 0.2514 1.6927 0.6933
NOD.CB17-Prkdcscid/J both 4.192 0.2902 4.769 3.615
NOD/ShiLtJ both 1.492 0.2052 1.9 1.084




  GWAS USING LINEAR MIXED MODELS