Project measure / variable:   Jaxpheno6   pct_NK_8

ID, description, units MPD:23107   pct_NK_8   splenic NK cells (percentage of total viable cells)   [%]  at age age 8wks  
Data set, strains Jaxpheno6   inbred   11 strains     sex: both     age: 8wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic NK cells (percentage of total viable cells) at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.95   % 2.47   %
Median of the strain means1.93   % 2.07   %
SD of the strain means± 2.86 ± 1.81
Coefficient of variation (CV)0.967 0.732
Min–max range of strain means1.43   –   11.4   % 1.53   –   7.86   %
Mean sample size per strain8.9   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4175 0.4175 1.2679 0.2615
strain 10 734.8958 73.4896 223.1638 < 0.0001
sex:strain 10 47.6761 4.7676 14.4777 < 0.0001
Residuals 207 68.1667 0.3293


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 2.15 0.301   4 0.15 0.14 1.89, 2.58 -0.28
B6.129P2-Apoetm1Unc/J m 2.18 0.463   5 0.207 0.213 1.36, 2.48 -0.16
B6D2F1/J f 1.88 0.182   10 0.0576 0.0969 1.65, 2.23 -0.38
B6D2F1/J m 1.58 0.0576   5 0.0258 0.0364 1.52, 1.66 -0.49
BALB/cByJ f 3.5 0.918   10 0.29 0.262 2.31, 4.8 0.19
BALB/cByJ m 2.25 0.332   10 0.105 0.147 1.8, 2.9 -0.12
BALB/cJ f 1.75 0.717   10 0.227 0.409 1.01, 2.53 -0.42
BALB/cJ m 2.07 0.35   10 0.111 0.169 1.56, 2.61 -0.22
C3H/HeJ f 1.43 0.26   5 0.116 0.182 1.07, 1.63 -0.53
C3H/HeJ m 2.2 0.115   5 0.0515 0.0524 2.01, 2.32 -0.15
C57BL/6J f 1.93 0.469   30 0.0856 0.243 1.21, 2.83 -0.36
C57BL/6J m 1.94 0.58   15 0.15 0.298 1.24, 3.13 -0.29
CBA/J f 1.73 0.807   10 0.255 0.465 0.87, 2.61 -0.43
CBA/J m 1.59 0.406   20 0.0908 0.255 0.87, 2.1 -0.49
DBA/2J f 2.38 0.455   10 0.144 0.191 1.94, 3.36 -0.2
DBA/2J m 1.53 0.359   15 0.0927 0.235 1.01, 2.19 -0.52
FVB/NJ f 2.54 0.351   5 0.157 0.138 1.99, 2.92 -0.14
FVB/NJ m 2.29 0.302   10 0.0954 0.132 1.82, 2.86 -0.1
NOD.CB17-Prkdcscid/J f 11.4 1.83   5 0.819 0.16 9.61, 14.0 2.96
NOD.CB17-Prkdcscid/J m 7.86 1.16   10 0.367 0.148 6.0, 9.69 2.98
NOD/ShiLtJ f 1.8 0.24   15 0.062 0.134 1.28, 2.15 -0.4
NOD/ShiLtJ m 1.72 0.279   10 0.0883 0.163 1.16, 1.99 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 2.15 0.2869 2.7157 1.5843
B6.129P2-Apoetm1Unc/J m 2.176 0.2566 2.682 1.67
B6D2F1/J f 1.879 0.1815 2.2368 1.5212
B6D2F1/J m 1.582 0.2566 2.088 1.076
BALB/cByJ f 3.504 0.1815 3.8618 3.1462
BALB/cByJ m 2.253 0.1815 2.6108 1.8952
BALB/cJ f 1.752 0.1815 2.1098 1.3942
BALB/cJ m 2.073 0.1815 2.4308 1.7152
C3H/HeJ f 1.428 0.2566 1.934 0.922
C3H/HeJ m 2.198 0.2566 2.704 1.692
C57BL/6J f 1.9267 0.1048 2.1332 1.7201
C57BL/6J m 1.9427 0.1482 2.2348 1.6506
CBA/J f 1.733 0.1815 2.0908 1.3752
CBA/J m 1.5935 0.1283 1.8465 1.3405
DBA/2J f 2.379 0.1815 2.7368 2.0212
DBA/2J m 1.5273 0.1482 1.8194 1.2352
FVB/NJ f 2.544 0.2566 3.05 2.038
FVB/NJ m 2.285 0.1815 2.6428 1.9272
NOD.CB17-Prkdcscid/J f 11.428 0.2566 11.934 10.922
NOD.CB17-Prkdcscid/J m 7.855 0.1815 8.2128 7.4972
NOD/ShiLtJ f 1.7993 0.1482 2.0914 1.5072
NOD/ShiLtJ m 1.716 0.1815 2.0738 1.3582


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 2.163 0.1925 2.5425 1.7835
B6D2F1/J both 1.7305 0.1572 2.0403 1.4207
BALB/cByJ both 2.8785 0.1283 3.1315 2.6255
BALB/cJ both 1.9125 0.1283 2.1655 1.6595
C3H/HeJ both 1.813 0.1815 2.1708 1.4552
C57BL/6J both 1.9347 0.0907 2.1135 1.7558
CBA/J both 1.6633 0.1111 1.8823 1.4442
DBA/2J both 1.9532 0.1171 2.1841 1.7222
FVB/NJ both 2.4145 0.1572 2.7243 2.1047
NOD.CB17-Prkdcscid/J both 9.6415 0.1572 9.9513 9.3317
NOD/ShiLtJ both 1.7577 0.1171 1.9886 1.5267




  GWAS USING LINEAR MIXED MODELS