Project measure / variable:   Jaxpheno6   pct_NKT_16

ID, description, units MPD:23106   pct_NKT_16   splenic NK T cells (percentage of total viable cells)   [%]  at age age 16wks  
Data set, strains Jaxpheno6   inbred   8 strains     sex: both     age: 16wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic NK T cells (percentage of total viable cells) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains6 strains
Mean of the strain means1.42   % 0.798   %
Median of the strain means0.809   % 0.650   %
SD of the strain means± 1.77 ± 0.340
Coefficient of variation (CV)1.24 0.426
Min–max range of strain means0.464   –   5.73   % 0.594   –   1.47   %
Mean sample size per strain8.0   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.5002 5.5002 1.0076 0.3183
strain 5 60.0282 12.0056 2.1994 0.0616
sex:strain 5 58.6461 11.7292 2.1488 0.0672
Residuals 86 469.4319 5.4585


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.464 0.172   5 0.077 0.371 0.29, 0.74 -0.54
BALB/cByJ f 0.785 0.279   10 0.0882 0.355 0.42, 1.13 -0.36
BALB/cByJ m 0.6 0.343   9 0.114 0.572 0.3, 1.15 -0.58
C3H/HeJ f 0.59 0.0819   10 0.0259 0.139 0.51, 0.71 -0.47
C3H/HeJ m 0.654 0.101   5 0.045 0.154 0.55, 0.81 -0.42
C57BL/6J f 0.892 0.0835   5 0.0373 0.0936 0.8, 1.01 -0.3
CBA/J f 0.578 0.133   9 0.0444 0.23 0.4, 0.72 -0.48
CBA/J m 0.646 0.0648   10 0.0205 0.1 0.56, 0.74 -0.45
FVB/NJ f 0.834 0.0986   10 0.0312 0.118 0.73, 0.95 -0.33
FVB/NJ m 0.826 0.124   5 0.0556 0.151 0.65, 0.97 0.08
NOD.CB17-Prkdcscid/J f 5.73 10.8   5 4.82 1.88 0.6, 25.0 2.43
NOD.CB17-Prkdcscid/J m 0.594 0.126   5 0.0564 0.212 0.45, 0.77 -0.6
NOD/ShiLtJ f 1.51 0.29   10 0.0917 0.192 0.96, 1.94 0.05
NOD/ShiLtJ m 1.47 0.499   10 0.158 0.339 0.73, 2.55 1.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 0.785 0.7388 2.2537 0.0
BALB/cByJ m 0.6 0.7788 2.1482 0.0
C3H/HeJ f 0.59 0.7388 2.0587 0.0
C3H/HeJ m 0.654 1.0448 2.7311 0.0
CBA/J f 0.5778 0.7788 2.1259 0.0
CBA/J m 0.646 0.7388 2.1147 0.0
FVB/NJ f 0.834 0.7388 2.3027 0.0
FVB/NJ m 0.826 1.0448 2.9031 0.0
NOD.CB17-Prkdcscid/J f 5.734 1.0448 7.8111 3.6569
NOD.CB17-Prkdcscid/J m 0.594 1.0448 2.6711 0.0
NOD/ShiLtJ f 1.512 0.7388 2.9807 0.0433
NOD/ShiLtJ m 1.473 0.7388 2.9417 0.0043


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 0.6925 0.5367 1.7595 0.0
C3H/HeJ both 0.622 0.6398 1.8939 0.0
CBA/J both 0.6119 0.5367 1.6789 0.0
FVB/NJ both 0.83 0.6398 2.1019 0.0
NOD.CB17-Prkdcscid/J both 3.164 0.7388 4.6327 1.6953
NOD/ShiLtJ both 1.4925 0.5224 2.531 0.454




  GWAS USING LINEAR MIXED MODELS